HEADER STRUCTURAL PROTEIN 09-OCT-18 6MQB TITLE CRYSTAL STRUCTURE OF GTPASE DOMAIN OF HUMAN SEPTIN 12 IN COMPLEX WITH TITLE 2 GMPPNP IN SPACE GROUP C2221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEPTIN-12; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEPT12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETA DE3 KEYWDS CYTOSKELETON COMPONENT SEPTIN GTPASE SPERMATOGENESIS, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.K.S.V.CASTRO,H.M.PEREIRA,J.BRANDAO-NETO,A.P.U.ULIAN,R.C.GARRATT REVDAT 5 11-OCT-23 6MQB 1 REMARK REVDAT 4 03-JUN-20 6MQB 1 JRNL REVDAT 3 08-APR-20 6MQB 1 JRNL REVDAT 2 01-JAN-20 6MQB 1 REMARK REVDAT 1 16-OCT-19 6MQB 0 JRNL AUTH D.K.S.D.V.CASTRO,S.M.O.DA SILVA,H.D.PEREIRA,J.N.A.MACEDO, JRNL AUTH 2 D.A.LEONARDO,N.F.VALADARES,P.S.KUMAGAI,J.BRANDAO-NETO, JRNL AUTH 3 A.P.U.ARAUJO,R.C.GARRATT JRNL TITL A COMPLETE COMPENDIUM OF CRYSTAL STRUCTURES FOR THE HUMAN JRNL TITL 2 SEPT3 SUBGROUP REVEALS FUNCTIONAL PLASTICITY AT A SPECIFIC JRNL TITL 3 SEPTIN INTERFACE. JRNL REF IUCRJ V. 7 462 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32431830 JRNL DOI 10.1107/S2052252520002973 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9408 - 3.8517 0.99 2765 124 0.1641 0.1980 REMARK 3 2 3.8517 - 3.0574 0.99 2660 135 0.1898 0.2396 REMARK 3 3 3.0574 - 2.6710 0.99 2604 154 0.2295 0.2861 REMARK 3 4 2.6710 - 2.4268 0.99 2604 121 0.2521 0.2979 REMARK 3 5 2.4268 - 2.2528 0.99 2615 121 0.2598 0.3348 REMARK 3 6 2.2528 - 2.1200 0.99 2586 124 0.2756 0.3116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2206 REMARK 3 ANGLE : 0.477 3014 REMARK 3 CHIRALITY : 0.041 346 REMARK 3 PLANARITY : 0.003 387 REMARK 3 DIHEDRAL : 16.995 1332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5110 -27.1998 20.0602 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.3809 REMARK 3 T33: 0.3373 T12: 0.0455 REMARK 3 T13: 0.0366 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 4.5236 L22: 4.4906 REMARK 3 L33: 4.7534 L12: 0.6929 REMARK 3 L13: 1.9007 L23: 2.4645 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.6189 S13: -0.2527 REMARK 3 S21: -0.1780 S22: 0.1206 S23: -0.2108 REMARK 3 S31: 0.1713 S32: 0.6894 S33: -0.1679 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2111 -15.0550 15.6685 REMARK 3 T TENSOR REMARK 3 T11: 0.3281 T22: 0.3931 REMARK 3 T33: 0.3528 T12: 0.0223 REMARK 3 T13: 0.0424 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.9566 L22: 1.9152 REMARK 3 L33: 3.1846 L12: -0.4079 REMARK 3 L13: 0.2596 L23: 0.2631 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.4300 S13: 0.0209 REMARK 3 S21: -0.2041 S22: -0.0521 S23: -0.0409 REMARK 3 S31: -0.1086 S32: 0.2630 S33: 0.0032 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8498 -17.3659 21.7265 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.2861 REMARK 3 T33: 0.2924 T12: 0.0355 REMARK 3 T13: -0.0023 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.5191 L22: 2.1581 REMARK 3 L33: 3.2588 L12: 0.4560 REMARK 3 L13: -0.4314 L23: -1.9011 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.1872 S13: 0.1793 REMARK 3 S21: -0.2077 S22: 0.0570 S23: 0.1217 REMARK 3 S31: 0.0594 S32: -0.1866 S33: -0.1277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5635 -25.5388 26.7683 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.4080 REMARK 3 T33: 0.3645 T12: -0.0298 REMARK 3 T13: -0.0299 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.2972 L22: 5.0844 REMARK 3 L33: 4.8817 L12: -1.1779 REMARK 3 L13: 0.6333 L23: -0.1909 REMARK 3 S TENSOR REMARK 3 S11: 0.2117 S12: 0.3298 S13: -0.1190 REMARK 3 S21: -0.1500 S22: -0.2706 S23: 0.3359 REMARK 3 S31: 0.1385 S32: -0.5582 S33: 0.0863 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0095 -26.4858 17.4315 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.3136 REMARK 3 T33: 0.2576 T12: 0.0537 REMARK 3 T13: 0.0547 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 1.7290 L22: 6.5380 REMARK 3 L33: 4.2834 L12: -0.7303 REMARK 3 L13: 1.1256 L23: -2.9289 REMARK 3 S TENSOR REMARK 3 S11: 0.2843 S12: 0.1204 S13: -0.3177 REMARK 3 S21: -0.6572 S22: 0.1290 S23: 0.4665 REMARK 3 S31: 0.5754 S32: -0.0676 S33: -0.3735 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 45.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 1.04200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MQ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8000, 20% V/V ETHYLENE REMARK 280 GLYCOL, 0.1 M MES/IMIDAZOLE PH 6.5 AND 20MM OF EACH: SODIUM REMARK 280 FORMATE, AMMONIUM ACETATE, TRISODIUM CITRATE, SODIUM POTASSIUM L- REMARK 280 TARTRATE, SODIUM OXAMATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.51000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.51000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.84000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.51000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.93000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.84000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.51000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.93000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.84000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 590 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 598 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 599 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 VAL A 40 REMARK 465 PRO A 41 REMARK 465 ARG A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 HIS A 45 REMARK 465 MET A 46 REMARK 465 GLY A 47 REMARK 465 PHE A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 ASP A 231 REMARK 465 ILE A 232 REMARK 465 LEU A 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 48 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLN A 150 CG CD OE1 NE2 REMARK 470 HIS A 152 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 MET A 226 CG SD CE REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 170 -105.86 -106.19 REMARK 500 ARG A 292 -66.71 -106.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 63 OG REMARK 620 2 THR A 89 OG1 81.9 REMARK 620 3 GNP A 401 O1G 163.5 91.5 REMARK 620 4 GNP A 401 O1B 89.9 167.6 93.8 REMARK 620 5 HOH A 521 O 83.3 89.8 81.5 79.9 REMARK 620 6 HOH A 522 O 90.9 92.5 104.5 97.1 173.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 DBREF 6MQB A 46 320 UNP Q8IYM1 SEP12_HUMAN 46 320 SEQADV 6MQB MET A 26 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB GLY A 27 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB SER A 28 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB SER A 29 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 30 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 31 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 32 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 33 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 34 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 35 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB SER A 36 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB SER A 37 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB GLY A 38 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB LEU A 39 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB VAL A 40 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB PRO A 41 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB ARG A 42 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB GLY A 43 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB SER A 44 UNP Q8IYM1 EXPRESSION TAG SEQADV 6MQB HIS A 45 UNP Q8IYM1 EXPRESSION TAG SEQRES 1 A 295 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 295 LEU VAL PRO ARG GLY SER HIS MET GLY PHE GLU PHE ASN SEQRES 3 A 295 ILE MET VAL VAL GLY GLN SER GLY LEU GLY LYS SER THR SEQRES 4 A 295 MET VAL ASN THR LEU PHE LYS SER LYS VAL TRP LYS SER SEQRES 5 A 295 ASN PRO PRO GLY LEU GLY VAL PRO THR PRO GLN THR LEU SEQRES 6 A 295 GLN LEU HIS SER LEU THR HIS VAL ILE GLU GLU LYS GLY SEQRES 7 A 295 VAL LYS LEU LYS LEU THR VAL THR ASP THR PRO GLY PHE SEQRES 8 A 295 GLY ASP GLN ILE ASN ASN ASP ASN CYS TRP ASP PRO ILE SEQRES 9 A 295 LEU GLY TYR ILE ASN GLU GLN TYR GLU GLN TYR LEU GLN SEQRES 10 A 295 GLU GLU ILE LEU ILE THR ARG GLN ARG HIS ILE PRO ASP SEQRES 11 A 295 THR ARG VAL HIS CYS CYS VAL TYR PHE VAL PRO PRO THR SEQRES 12 A 295 GLY HIS CYS LEU ARG PRO LEU ASP ILE GLU PHE LEU GLN SEQRES 13 A 295 ARG LEU CYS ARG THR VAL ASN VAL VAL PRO VAL ILE ALA SEQRES 14 A 295 ARG ALA ASP SER LEU THR MET GLU GLU ARG GLU ALA PHE SEQRES 15 A 295 ARG ARG ARG ILE GLN GLN ASN LEU ARG THR HIS CYS ILE SEQRES 16 A 295 ASP VAL TYR PRO GLN MET CYS PHE ASP GLU ASP ILE ASN SEQRES 17 A 295 ASP LYS ILE LEU ASN SER LYS LEU ARG ASP ARG ILE PRO SEQRES 18 A 295 PHE ALA VAL VAL GLY ALA ASP GLN GLU HIS LEU VAL ASN SEQRES 19 A 295 GLY ARG CYS VAL LEU GLY ARG LYS THR LYS TRP GLY ILE SEQRES 20 A 295 ILE GLU VAL GLU ASN MET ALA HIS CYS GLU PHE PRO LEU SEQRES 21 A 295 LEU ARG ASP LEU LEU ILE ARG SER HIS LEU GLN ASP LEU SEQRES 22 A 295 LYS ASP ILE THR HIS ASN ILE HIS TYR GLU ASN TYR ARG SEQRES 23 A 295 VAL ILE ARG LEU ASN GLU SER HIS LEU HET GNP A 401 32 HET MG A 402 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *100(H2 O) HELIX 1 AA1 GLY A 61 LYS A 71 1 11 HELIX 2 AA2 TRP A 126 ILE A 145 1 20 HELIX 3 AA3 ARG A 173 CYS A 184 1 12 HELIX 4 AA4 ARG A 195 LEU A 199 5 5 HELIX 5 AA5 THR A 200 HIS A 218 1 19 HELIX 6 AA6 ASP A 234 ILE A 245 1 12 HELIX 7 AA7 GLU A 282 ARG A 292 1 11 HELIX 8 AA8 HIS A 294 ILE A 305 1 12 HELIX 9 AA9 ILE A 305 GLU A 317 1 13 SHEET 1 AA1 6 HIS A 93 GLU A 101 0 SHEET 2 AA1 6 VAL A 104 ASP A 112 -1 O ASP A 112 N HIS A 93 SHEET 3 AA1 6 GLU A 49 GLY A 56 1 N ILE A 52 O THR A 109 SHEET 4 AA1 6 CYS A 160 VAL A 165 1 O PHE A 164 N VAL A 55 SHEET 5 AA1 6 VAL A 189 ILE A 193 1 O VAL A 190 N CYS A 161 SHEET 6 AA1 6 PHE A 247 ALA A 248 1 O PHE A 247 N ILE A 193 SHEET 1 AA2 3 GLU A 255 VAL A 258 0 SHEET 2 AA2 3 ARG A 261 LYS A 267 -1 O VAL A 263 N HIS A 256 SHEET 3 AA2 3 ILE A 272 GLU A 274 -1 O ILE A 273 N ARG A 266 LINK OG SER A 63 MG MG A 402 1555 1555 2.12 LINK OG1 THR A 89 MG MG A 402 1555 1555 2.10 LINK O1G GNP A 401 MG MG A 402 1555 1555 1.98 LINK O1B GNP A 401 MG MG A 402 1555 1555 2.06 LINK MG MG A 402 O HOH A 521 1555 1555 2.07 LINK MG MG A 402 O HOH A 522 1555 1555 2.08 CISPEP 1 TYR A 223 PRO A 224 0 -1.26 CISPEP 2 ILE A 245 PRO A 246 0 4.02 SITE 1 AC1 23 SER A 58 GLY A 59 LEU A 60 GLY A 61 SITE 2 AC1 23 LYS A 62 SER A 63 THR A 64 THR A 86 SITE 3 AC1 23 GLN A 88 THR A 89 GLY A 115 THR A 168 SITE 4 AC1 23 HIS A 170 ARG A 195 ASP A 197 SER A 198 SITE 5 AC1 23 GLU A 203 VAL A 250 GLY A 251 ARG A 266 SITE 6 AC1 23 MG A 402 HOH A 521 HOH A 544 SITE 1 AC2 5 SER A 63 THR A 89 GNP A 401 HOH A 521 SITE 2 AC2 5 HOH A 522 CRYST1 41.020 91.860 151.680 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006593 0.00000