HEADER LYASE 09-OCT-18 6MQH TITLE CRYSTAL STRUCTURE OF 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE (HTPA TITLE 2 SYNTHASE) FROM BURKHOLDERIA MALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BUMAA.01530.A.B1; COMPND 5 SYNONYM: HTPA SYNTHASE; COMPND 6 EC: 4.3.3.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MALLEI (STRAIN ATCC 23344); SOURCE 3 ORGANISM_TAXID: 243160; SOURCE 4 STRAIN: ATCC 23344; SOURCE 5 GENE: DAPA, BMA1678; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BUMAA.01563.A.B1 KEYWDS SSGCID, BURKHOLDERIA MULTIVORANS, 4-HYDROXY-TETRAHYDRODIPICOLINATE KEYWDS 2 SYNTHASE, HTPA SYNTHASE, DAPA, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-MAR-24 6MQH 1 REMARK REVDAT 2 12-DEC-18 6MQH 1 REMARK ATOM REVDAT 1 31-OCT-18 6MQH 0 JRNL AUTH J.ABENDROTH,D.G.CONRADY,D.D.LORIMER,P.E.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF 4-HYDROXY-TETRAHYDRODIPICOLINATE JRNL TITL 2 SYNTHASE (HTPA SYNTHASE) FROM BURKHOLDERIA MALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 70904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4896 - 4.0963 1.00 5284 129 0.1419 0.1499 REMARK 3 2 4.0963 - 3.2517 1.00 5043 158 0.1347 0.1609 REMARK 3 3 3.2517 - 2.8407 1.00 4994 143 0.1509 0.1637 REMARK 3 4 2.8407 - 2.5810 1.00 4982 128 0.1587 0.1962 REMARK 3 5 2.5810 - 2.3960 1.00 4978 127 0.1613 0.1809 REMARK 3 6 2.3960 - 2.2548 1.00 4916 138 0.1788 0.2059 REMARK 3 7 2.2548 - 2.1419 0.99 4932 134 0.2500 0.3017 REMARK 3 8 2.1419 - 2.0486 1.00 4907 157 0.1614 0.2090 REMARK 3 9 2.0486 - 1.9698 1.00 4916 151 0.1663 0.2119 REMARK 3 10 1.9698 - 1.9018 0.91 4462 129 0.2934 0.3103 REMARK 3 11 1.9018 - 1.8423 1.00 4875 140 0.1905 0.2298 REMARK 3 12 1.8423 - 1.7897 1.00 4890 142 0.1771 0.2383 REMARK 3 13 1.7897 - 1.7425 1.00 4882 137 0.1808 0.1896 REMARK 3 14 1.7425 - 1.7000 1.00 4886 144 0.1852 0.2453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4501 REMARK 3 ANGLE : 0.950 6141 REMARK 3 CHIRALITY : 0.063 738 REMARK 3 PLANARITY : 0.007 796 REMARK 3 DIHEDRAL : 12.457 2763 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8550 13.6455 69.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.3122 REMARK 3 T33: 0.1830 T12: -0.0419 REMARK 3 T13: -0.0428 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 1.3568 L22: 0.8090 REMARK 3 L33: 2.6260 L12: -0.1172 REMARK 3 L13: 0.1314 L23: 0.1933 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.4064 S13: 0.1704 REMARK 3 S21: 0.1148 S22: 0.0031 S23: -0.1855 REMARK 3 S31: -0.1597 S32: 0.4069 S33: -0.0518 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5221 -3.9816 62.4994 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.2063 REMARK 3 T33: 0.1202 T12: 0.0328 REMARK 3 T13: -0.0225 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.9726 L22: 0.8815 REMARK 3 L33: 1.5360 L12: 0.1237 REMARK 3 L13: 0.0673 L23: 0.4253 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: -0.2692 S13: -0.0989 REMARK 3 S21: 0.0749 S22: 0.0320 S23: -0.1622 REMARK 3 S31: 0.1500 S32: 0.2910 S33: -0.0179 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0859 9.0901 71.0827 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.2245 REMARK 3 T33: 0.1131 T12: 0.0030 REMARK 3 T13: -0.0163 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.7114 L22: 1.0980 REMARK 3 L33: 1.1148 L12: 0.3985 REMARK 3 L13: -0.2889 L23: -0.2170 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.2706 S13: 0.0624 REMARK 3 S21: 0.1202 S22: -0.0069 S23: -0.0262 REMARK 3 S31: -0.0718 S32: 0.0295 S33: -0.0081 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6599 25.7172 66.4487 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.2559 REMARK 3 T33: 0.2597 T12: 0.0855 REMARK 3 T13: 0.0097 T23: -0.1055 REMARK 3 L TENSOR REMARK 3 L11: 3.6998 L22: 4.7164 REMARK 3 L33: 1.7907 L12: -0.1271 REMARK 3 L13: 2.0308 L23: -0.6582 REMARK 3 S TENSOR REMARK 3 S11: -0.2281 S12: -0.6467 S13: 0.5844 REMARK 3 S21: 0.3112 S22: 0.2552 S23: 0.1112 REMARK 3 S31: -0.9560 S32: -0.5006 S33: 0.0011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0140 -3.3464 32.6207 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0921 REMARK 3 T33: 0.1287 T12: 0.0007 REMARK 3 T13: 0.0185 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.8950 L22: 0.7710 REMARK 3 L33: 2.8958 L12: -0.1114 REMARK 3 L13: 0.6568 L23: -0.5354 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.0864 S13: 0.0129 REMARK 3 S21: -0.0725 S22: -0.0224 S23: -0.1146 REMARK 3 S31: -0.0083 S32: 0.2600 S33: 0.0363 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4600 12.0052 39.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0660 REMARK 3 T33: 0.1339 T12: -0.0259 REMARK 3 T13: 0.0071 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.0087 L22: 0.5097 REMARK 3 L33: 1.1610 L12: -0.2139 REMARK 3 L13: -0.2853 L23: 0.1190 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0103 S13: 0.1444 REMARK 3 S21: 0.0161 S22: -0.0074 S23: -0.0823 REMARK 3 S31: -0.1805 S32: 0.1125 S33: -0.0244 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6429 -4.8828 31.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0733 REMARK 3 T33: 0.1061 T12: -0.0089 REMARK 3 T13: 0.0171 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.2348 L22: 0.7338 REMARK 3 L33: 1.0380 L12: -0.4532 REMARK 3 L13: 0.2238 L23: -0.2068 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.1211 S13: -0.0819 REMARK 3 S21: -0.0281 S22: -0.0363 S23: 0.0093 REMARK 3 S31: 0.0871 S32: 0.0096 S33: 0.0115 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6106 -21.9737 34.9502 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.0766 REMARK 3 T33: 0.2492 T12: -0.0908 REMARK 3 T13: 0.0508 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.1079 L22: 4.3124 REMARK 3 L33: 1.4820 L12: 0.4300 REMARK 3 L13: 0.5365 L23: -1.2510 REMARK 3 S TENSOR REMARK 3 S11: -0.3420 S12: 0.0404 S13: -0.3314 REMARK 3 S21: -0.5145 S22: 0.0837 S23: 0.1485 REMARK 3 S31: 0.7935 S32: -0.3823 S33: 0.0433 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18; 12-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 21-ID-F; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872; 1.5418 REMARK 200 MONOCHROMATOR : DIAMOND (111); NULL REMARK 200 OPTICS : NULL; RIGAKU VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.474 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.081 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.16 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23.87 MG/ML BUMAA.01563.A.B1.PW38480 + REMARK 280 5 MM AMPPNP + 5 MM MAGNESIUM CHLORIDE AGAINST MOLECULAR REMARK 280 DIMENSIONS MORPHEUS SCREEN, E3 (10% W/V PEG4000, 20% V/V REMARK 280 GLYCEROL, 30 MM DIETHYLENEGLYCOL, 30 MM TRIETHYLENEGLYCOL, 30 MM REMARK 280 TETRAETHYLENEGLYCOL, 30 MM PENTAETHYLENEGLYCOL, 100 MM MES/ REMARK 280 IMIDAZOLE, PH 6.5), CRYOPROTECION: DIRECT, TRAY 301751E3, PUCK REMARK 280 EGQ4-8, FOR PHASING, A CRYSTAL FROM AN APO SETUP OF THE SAME REMARK 280 PROTEIN FROM RIGAKU REAGENTS JCSG+ SCREEN C4 (10% PEG6000, 100 REMARK 280 MM HEPES FREE ACID/NAOH) WAS INCUBATED FOR 10 SECONDS EACH IN REMARK 280 12.5% 2.5 M SODIUM IODIDE IN ETHYLENE GLYCOL AND IN 25% 2.5 M REMARK 280 SODIUM IODIDE IN ETHYLENE GLYCOL (625 MM FINAL SODIUM IODIDE REMARK 280 CONCENTRATION) AND DIRECTLY VITRIFIED, PUCK: OVZ1-3, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 75.43500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.43500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 695 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 ASP B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 284 CG CD OE1 OE2 REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 666 O HOH B 754 2.11 REMARK 500 O HOH A 445 O HOH A 734 2.14 REMARK 500 OE2 GLU A 93 O HOH A 401 2.17 REMARK 500 O HOH A 480 O HOH A 745 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 683 O HOH A 683 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 78.52 -115.06 REMARK 500 ALA A 86 14.15 -154.58 REMARK 500 TYR A 116 -49.88 75.27 REMARK 500 VAL A 149 -57.59 71.04 REMARK 500 ALA B 86 20.06 -149.00 REMARK 500 TYR B 116 -47.17 72.81 REMARK 500 VAL B 149 -54.01 67.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 212 SER A 213 -143.70 REMARK 500 ILE B 212 SER B 213 -145.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 777 DISTANCE = 5.83 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUMAA.0.1563.A RELATED DB: TARGETTRACK DBREF1 6MQH A 1 300 UNP A0A0H2WFM6_BURMA DBREF2 6MQH A A0A0H2WFM6 1 300 DBREF1 6MQH B 1 300 UNP A0A0H2WFM6_BURMA DBREF2 6MQH B A0A0H2WFM6 1 300 SEQADV 6MQH MET A -7 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH ALA A -6 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS A -5 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS A -4 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS A -3 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS A -2 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS A -1 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS A 0 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH MET B -7 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH ALA B -6 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS B -5 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS B -4 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS B -3 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS B -2 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS B -1 UNP A0A0H2WFM EXPRESSION TAG SEQADV 6MQH HIS B 0 UNP A0A0H2WFM EXPRESSION TAG SEQRES 1 A 308 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASN GLY THR SEQRES 2 A 308 GLN ASP GLY ILE GLN ILE ARG GLY SER VAL PRO ALA ILE SEQRES 3 A 308 VAL THR PRO MET LEU GLU ASP GLY GLY LEU ASP LEU ALA SEQRES 4 A 308 ALA PHE ARG LYS LEU ILE ASP TRP HIS ILE GLU GLU GLY SEQRES 5 A 308 THR ASP ALA LEU VAL VAL VAL GLY THR SER GLY GLU SER SEQRES 6 A 308 ALA THR LEU SER VAL ASP GLU HIS VAL LEU MET ILE GLU SEQRES 7 A 308 THR ALA VAL LYS HIS ALA ALA LYS ARG ILE PRO ILE VAL SEQRES 8 A 308 ALA GLY ALA GLY GLY ASN SER THR THR GLU ALA ILE GLU SEQRES 9 A 308 LEU SER LYS HIS ALA LYS ALA VAL GLY ALA ASP ALA THR SEQRES 10 A 308 LEU GLN VAL VAL PRO TYR TYR ASN LYS PRO THR GLN GLU SEQRES 11 A 308 GLY ILE TYR ARG HIS PHE LYS ALA ILE ALA GLU ALA VAL SEQRES 12 A 308 ASP LEU PRO VAL ILE LEU TYR ASN VAL PRO GLY ARG THR SEQRES 13 A 308 VAL ALA ASP MET SER ASN GLU THR THR LEU ARG LEU ALA SEQRES 14 A 308 GLN VAL PRO GLY ILE ILE GLY VAL LYS ASP ALA THR GLY SEQRES 15 A 308 ASN ILE ASP ARG ALA ALA GLN LEU ILE LYS ALA ALA PRO SEQRES 16 A 308 ALA HIS PHE SER ILE TYR SER GLY ASP ASP PRO THR ALA SEQRES 17 A 308 ILE ALA LEU MET LEU LEU GLY GLY HIS GLY ASN ILE SER SEQRES 18 A 308 VAL THR ALA ASN VAL ALA PRO ARG ALA MET SER GLU LEU SEQRES 19 A 308 CYS ARG ALA ALA LEU ALA ALA ASP VAL LYS THR ALA ARG SEQRES 20 A 308 GLU ILE HIS MET LYS LEU LEU SER LEU HIS LYS HIS LEU SEQRES 21 A 308 PHE ILE GLU ALA ASN PRO ILE PRO VAL LYS TRP ALA LEU SEQRES 22 A 308 GLN GLN MET GLY LYS ILE ALA GLY GLY ILE ARG LEU PRO SEQRES 23 A 308 LEU THR PRO LEU ASP GLU ARG CYS HIS GLU THR VAL ARG SEQRES 24 A 308 GLY ALA LEU ARG GLU ALA GLY LEU LEU SEQRES 1 B 308 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASN GLY THR SEQRES 2 B 308 GLN ASP GLY ILE GLN ILE ARG GLY SER VAL PRO ALA ILE SEQRES 3 B 308 VAL THR PRO MET LEU GLU ASP GLY GLY LEU ASP LEU ALA SEQRES 4 B 308 ALA PHE ARG LYS LEU ILE ASP TRP HIS ILE GLU GLU GLY SEQRES 5 B 308 THR ASP ALA LEU VAL VAL VAL GLY THR SER GLY GLU SER SEQRES 6 B 308 ALA THR LEU SER VAL ASP GLU HIS VAL LEU MET ILE GLU SEQRES 7 B 308 THR ALA VAL LYS HIS ALA ALA LYS ARG ILE PRO ILE VAL SEQRES 8 B 308 ALA GLY ALA GLY GLY ASN SER THR THR GLU ALA ILE GLU SEQRES 9 B 308 LEU SER LYS HIS ALA LYS ALA VAL GLY ALA ASP ALA THR SEQRES 10 B 308 LEU GLN VAL VAL PRO TYR TYR ASN LYS PRO THR GLN GLU SEQRES 11 B 308 GLY ILE TYR ARG HIS PHE LYS ALA ILE ALA GLU ALA VAL SEQRES 12 B 308 ASP LEU PRO VAL ILE LEU TYR ASN VAL PRO GLY ARG THR SEQRES 13 B 308 VAL ALA ASP MET SER ASN GLU THR THR LEU ARG LEU ALA SEQRES 14 B 308 GLN VAL PRO GLY ILE ILE GLY VAL LYS ASP ALA THR GLY SEQRES 15 B 308 ASN ILE ASP ARG ALA ALA GLN LEU ILE LYS ALA ALA PRO SEQRES 16 B 308 ALA HIS PHE SER ILE TYR SER GLY ASP ASP PRO THR ALA SEQRES 17 B 308 ILE ALA LEU MET LEU LEU GLY GLY HIS GLY ASN ILE SER SEQRES 18 B 308 VAL THR ALA ASN VAL ALA PRO ARG ALA MET SER GLU LEU SEQRES 19 B 308 CYS ARG ALA ALA LEU ALA ALA ASP VAL LYS THR ALA ARG SEQRES 20 B 308 GLU ILE HIS MET LYS LEU LEU SER LEU HIS LYS HIS LEU SEQRES 21 B 308 PHE ILE GLU ALA ASN PRO ILE PRO VAL LYS TRP ALA LEU SEQRES 22 B 308 GLN GLN MET GLY LYS ILE ALA GLY GLY ILE ARG LEU PRO SEQRES 23 B 308 LEU THR PRO LEU ASP GLU ARG CYS HIS GLU THR VAL ARG SEQRES 24 B 308 GLY ALA LEU ARG GLU ALA GLY LEU LEU FORMUL 3 HOH *789(H2 O) HELIX 1 AA1 ASP A 29 GLY A 44 1 16 HELIX 2 AA2 GLY A 52 LEU A 60 5 9 HELIX 3 AA3 SER A 61 ALA A 77 1 17 HELIX 4 AA4 SER A 90 VAL A 104 1 15 HELIX 5 AA5 THR A 120 VAL A 135 1 16 HELIX 6 AA6 VAL A 144 VAL A 149 1 6 HELIX 7 AA7 SER A 153 ALA A 161 1 9 HELIX 8 AA8 ASN A 175 ALA A 186 1 12 HELIX 9 AA9 ASP A 196 PRO A 198 5 3 HELIX 10 AB1 THR A 199 LEU A 206 1 8 HELIX 11 AB2 VAL A 214 VAL A 218 5 5 HELIX 12 AB3 ALA A 219 ALA A 232 1 14 HELIX 13 AB4 ASP A 234 LEU A 245 1 12 HELIX 14 AB5 LEU A 245 LEU A 252 1 8 HELIX 15 AB6 PRO A 258 MET A 268 1 11 HELIX 16 AB7 ASP A 283 ARG A 285 5 3 HELIX 17 AB8 CYS A 286 ALA A 297 1 12 HELIX 18 AB9 ASP B 29 GLY B 44 1 16 HELIX 19 AC1 GLY B 52 LEU B 60 5 9 HELIX 20 AC2 SER B 61 ALA B 77 1 17 HELIX 21 AC3 SER B 90 VAL B 104 1 15 HELIX 22 AC4 THR B 120 VAL B 135 1 16 HELIX 23 AC5 VAL B 144 VAL B 149 1 6 HELIX 24 AC6 SER B 153 ALA B 161 1 9 HELIX 25 AC7 ASN B 175 ALA B 186 1 12 HELIX 26 AC8 ASP B 196 PRO B 198 5 3 HELIX 27 AC9 THR B 199 LEU B 206 1 8 HELIX 28 AD1 VAL B 214 VAL B 218 5 5 HELIX 29 AD2 ALA B 219 ALA B 232 1 14 HELIX 30 AD3 ASP B 234 LEU B 245 1 12 HELIX 31 AD4 LEU B 245 LEU B 252 1 8 HELIX 32 AD5 PRO B 258 MET B 268 1 11 HELIX 33 AD6 ASP B 283 ARG B 285 5 3 HELIX 34 AD7 CYS B 286 ALA B 297 1 12 SHEET 1 AA1 8 GLY A 13 PRO A 16 0 SHEET 2 AA1 8 GLY A 210 SER A 213 1 O ASN A 211 N VAL A 15 SHEET 3 AA1 8 SER A 191 SER A 194 1 N SER A 194 O ILE A 212 SHEET 4 AA1 8 ILE A 166 ASP A 171 1 N VAL A 169 O TYR A 193 SHEET 5 AA1 8 VAL A 139 ASN A 143 1 N LEU A 141 O LYS A 170 SHEET 6 AA1 8 ALA A 108 VAL A 112 1 N GLN A 111 O ILE A 140 SHEET 7 AA1 8 ILE A 82 GLY A 85 1 N ALA A 84 O ALA A 108 SHEET 8 AA1 8 LEU A 48 VAL A 50 1 N LEU A 48 O VAL A 83 SHEET 1 AA2 8 GLY B 13 PRO B 16 0 SHEET 2 AA2 8 GLY B 210 SER B 213 1 O ASN B 211 N GLY B 13 SHEET 3 AA2 8 SER B 191 SER B 194 1 N SER B 194 O ILE B 212 SHEET 4 AA2 8 ILE B 166 ASP B 171 1 N VAL B 169 O TYR B 193 SHEET 5 AA2 8 VAL B 139 ASN B 143 1 N LEU B 141 O LYS B 170 SHEET 6 AA2 8 ALA B 108 VAL B 112 1 N GLN B 111 O ILE B 140 SHEET 7 AA2 8 ILE B 82 GLY B 85 1 N ALA B 84 O ALA B 108 SHEET 8 AA2 8 LEU B 48 VAL B 50 1 N VAL B 50 O GLY B 85 CISPEP 1 ASN A 257 PRO A 258 0 6.15 CISPEP 2 LEU A 277 PRO A 278 0 13.08 CISPEP 3 ASN B 257 PRO B 258 0 8.86 CISPEP 4 LEU B 277 PRO B 278 0 10.50 CRYST1 150.870 53.930 78.630 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012718 0.00000