HEADER TRANSLATION 16-OCT-18 6MS4 TITLE CRYSTAL STRUCTURE OF THE DENR-MCT-1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALIGNANT T-CELL-AMPLIFIED SEQUENCE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MCT-1,MULTIPLE COPIES T-CELL MALIGNANCIES; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DENSITY-REGULATED PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DRP,PROTEIN DRP1,SMOOTH MUSCLE CELL-ASSOCIATED PROTEIN 3, COMPND 10 SMAP-3; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCTS1, MCT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: DENR, DRP1, H14; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS REINITIATION, RIBOSOME, ZINC BINDING, TRNA BINDING, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR I.B.LOMAKIN,T.A.STEITZ,S.E.DMITRIEV REVDAT 5 11-OCT-23 6MS4 1 REMARK REVDAT 4 20-NOV-19 6MS4 1 REMARK REVDAT 3 23-JAN-19 6MS4 1 JRNL REVDAT 2 09-JAN-19 6MS4 1 JRNL REVDAT 1 02-JAN-19 6MS4 0 JRNL AUTH I.B.LOMAKIN,S.E.DMITRIEV,T.A.STEITZ JRNL TITL CRYSTAL STRUCTURE OF THE DENR-MCT-1 COMPLEX REVEALED JRNL TITL 2 ZINC-BINDING SITE ESSENTIAL FOR HETERODIMER FORMATION. JRNL REF PROC. NATL. ACAD. SCI. V. 116 528 2019 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30584092 JRNL DOI 10.1073/PNAS.1809688116 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.6037 - 3.8274 1.00 2954 149 0.1847 0.2079 REMARK 3 2 3.8274 - 3.0380 1.00 2777 156 0.2417 0.3252 REMARK 3 3 3.0380 - 2.6540 1.00 2773 129 0.2977 0.3434 REMARK 3 4 2.6540 - 2.4113 0.99 2696 142 0.3130 0.3318 REMARK 3 5 2.4113 - 2.2385 0.99 2713 149 0.3430 0.3953 REMARK 3 6 2.2385 - 2.1065 0.99 2671 155 0.4297 0.4806 REMARK 3 7 2.1065 - 2.0010 1.00 2663 137 0.4728 0.4427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1883 REMARK 3 ANGLE : 0.868 2553 REMARK 3 CHIRALITY : 0.053 287 REMARK 3 PLANARITY : 0.005 324 REMARK 3 DIHEDRAL : 8.516 1552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3000 -28.9438 -20.4732 REMARK 3 T TENSOR REMARK 3 T11: 1.2665 T22: 1.5746 REMARK 3 T33: 1.4335 T12: 0.2302 REMARK 3 T13: 0.0173 T23: 0.0941 REMARK 3 L TENSOR REMARK 3 L11: 2.8939 L22: 6.6861 REMARK 3 L33: 7.7452 L12: 3.0739 REMARK 3 L13: 0.3354 L23: 5.1012 REMARK 3 S TENSOR REMARK 3 S11: 0.9173 S12: -0.7247 S13: -1.1558 REMARK 3 S21: 0.1880 S22: -0.3098 S23: 0.8729 REMARK 3 S31: 0.9439 S32: -1.9490 S33: -0.5482 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7353 -13.8325 -31.0546 REMARK 3 T TENSOR REMARK 3 T11: 1.7124 T22: 1.0614 REMARK 3 T33: 0.9768 T12: 0.1835 REMARK 3 T13: 0.0996 T23: 0.3875 REMARK 3 L TENSOR REMARK 3 L11: 8.4304 L22: 4.5104 REMARK 3 L33: 5.6245 L12: 0.5139 REMARK 3 L13: 2.6147 L23: -0.6355 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: 2.4183 S13: 1.9578 REMARK 3 S21: -0.9112 S22: -0.5331 S23: 0.0781 REMARK 3 S31: -1.0892 S32: 0.6746 S33: 0.7803 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8092 -20.7130 -22.8816 REMARK 3 T TENSOR REMARK 3 T11: 1.0254 T22: 0.7742 REMARK 3 T33: 0.5326 T12: 0.2588 REMARK 3 T13: 0.0725 T23: 0.1000 REMARK 3 L TENSOR REMARK 3 L11: 8.9988 L22: 6.3435 REMARK 3 L33: 8.8456 L12: 1.1888 REMARK 3 L13: 2.1912 L23: -3.8590 REMARK 3 S TENSOR REMARK 3 S11: 0.5326 S12: 0.8606 S13: 0.4288 REMARK 3 S21: -0.5425 S22: 0.1745 S23: 0.6055 REMARK 3 S31: -0.2721 S32: -0.8586 S33: -0.5961 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8523 -22.0108 -8.1222 REMARK 3 T TENSOR REMARK 3 T11: 0.7711 T22: 0.7836 REMARK 3 T33: 0.4301 T12: -0.0359 REMARK 3 T13: 0.1780 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 6.1763 L22: 6.9618 REMARK 3 L33: 7.8232 L12: 1.3092 REMARK 3 L13: 0.2634 L23: 0.7692 REMARK 3 S TENSOR REMARK 3 S11: 0.7471 S12: -0.9653 S13: 0.5053 REMARK 3 S21: 0.3832 S22: -0.5197 S23: 0.1221 REMARK 3 S31: -0.4493 S32: 0.2844 S33: -0.1312 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0604 -29.3665 -26.4296 REMARK 3 T TENSOR REMARK 3 T11: 1.1302 T22: 0.9244 REMARK 3 T33: 0.6104 T12: 0.2235 REMARK 3 T13: 0.1872 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 4.0199 L22: 9.1467 REMARK 3 L33: 3.9026 L12: 1.5468 REMARK 3 L13: 3.9342 L23: 1.2978 REMARK 3 S TENSOR REMARK 3 S11: 0.1967 S12: -0.2175 S13: -0.3839 REMARK 3 S21: 0.1411 S22: 0.1877 S23: -0.5494 REMARK 3 S31: 0.8059 S32: 1.5367 S33: 0.1297 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4413 -42.5784 -15.1266 REMARK 3 T TENSOR REMARK 3 T11: 1.6935 T22: 0.8594 REMARK 3 T33: 0.6135 T12: 0.3078 REMARK 3 T13: 0.1203 T23: 0.0775 REMARK 3 L TENSOR REMARK 3 L11: 5.3202 L22: 6.2637 REMARK 3 L33: 0.6113 L12: -0.5432 REMARK 3 L13: 1.4664 L23: -1.1594 REMARK 3 S TENSOR REMARK 3 S11: 0.4468 S12: -0.1502 S13: -0.3420 REMARK 3 S21: 0.6842 S22: -0.2544 S23: -0.0785 REMARK 3 S31: 1.3848 S32: 0.5819 S33: -0.1945 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1999 -42.7663 -18.0960 REMARK 3 T TENSOR REMARK 3 T11: 1.7206 T22: 1.4328 REMARK 3 T33: 1.4197 T12: 0.2409 REMARK 3 T13: -0.0711 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 1.8432 L22: 2.2576 REMARK 3 L33: 1.8722 L12: 1.5642 REMARK 3 L13: 1.6482 L23: 1.7011 REMARK 3 S TENSOR REMARK 3 S11: -2.1298 S12: 0.0888 S13: 1.4915 REMARK 3 S21: 1.1151 S22: -1.2303 S23: -1.8613 REMARK 3 S31: 1.1700 S32: 0.8240 S33: 3.1763 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000235250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20310 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 59.577 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.521 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.42 REMARK 200 R MERGE FOR SHELL (I) : 6.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3R90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 20% PEG 4000, PH 8.6, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.37500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.90500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.18750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.90500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.56250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.18750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.90500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.56250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 51 CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS A 122 CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 63 O HOH B 201 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 -135.12 51.90 REMARK 500 SER A 12 -61.40 -133.92 REMARK 500 ASN A 13 65.30 -115.56 REMARK 500 LYS A 18 -82.83 -91.81 REMARK 500 LEU A 69 -71.20 -105.72 REMARK 500 ARG A 74 -118.16 58.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 56 GLU A 57 -146.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 201 REMARK 610 PGE A 202 REMARK 610 PGE B 102 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 34 SG REMARK 620 2 CYS B 37 SG 110.1 REMARK 620 3 CYS B 44 SG 93.2 108.0 REMARK 620 4 CYS B 53 SG 111.5 129.6 96.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 103 DBREF 6MS4 A 1 181 UNP Q9ULC4 MCTS1_HUMAN 1 181 DBREF 6MS4 B 25 70 UNP O43583 DENR_HUMAN 25 70 SEQADV 6MS4 GLY B 25 UNP O43583 ALA 25 ENGINEERED MUTATION SEQRES 1 A 181 MET PHE LYS LYS PHE ASP GLU LYS GLU ASN VAL SER ASN SEQRES 2 A 181 CYS ILE GLN LEU LYS THR SER VAL ILE LYS GLY ILE LYS SEQRES 3 A 181 ASN GLN LEU ILE GLU GLN PHE PRO GLY ILE GLU PRO TRP SEQRES 4 A 181 LEU ASN GLN ILE MET PRO LYS LYS ASP PRO VAL LYS ILE SEQRES 5 A 181 VAL ARG CYS HIS GLU HIS ILE GLU ILE LEU THR VAL ASN SEQRES 6 A 181 GLY GLU LEU LEU PHE PHE ARG GLN ARG GLU GLY PRO PHE SEQRES 7 A 181 TYR PRO THR LEU ARG LEU LEU HIS LYS TYR PRO PHE ILE SEQRES 8 A 181 LEU PRO HIS GLN GLN VAL ASP LYS GLY ALA ILE LYS PHE SEQRES 9 A 181 VAL LEU SER GLY ALA ASN ILE MET CYS PRO GLY LEU THR SEQRES 10 A 181 SER PRO GLY ALA LYS LEU TYR PRO ALA ALA VAL ASP THR SEQRES 11 A 181 ILE VAL ALA ILE MET ALA GLU GLY LYS GLN HIS ALA LEU SEQRES 12 A 181 CYS VAL GLY VAL MET LYS MET SER ALA GLU ASP ILE GLU SEQRES 13 A 181 LYS VAL ASN LYS GLY ILE GLY ILE GLU ASN ILE HIS TYR SEQRES 14 A 181 LEU ASN ASP GLY LEU TRP HIS MET LYS THR TYR LYS SEQRES 1 B 46 GLY ASP TYR PRO LEU ARG VAL LEU TYR CYS GLY VAL CYS SEQRES 2 B 46 SER LEU PRO THR GLU TYR CYS GLU TYR MET PRO ASP VAL SEQRES 3 B 46 ALA LYS CYS ARG GLN TRP LEU GLU LYS ASN PHE PRO ASN SEQRES 4 B 46 GLU PHE ALA LYS LEU THR VAL HET PGE A 201 8 HET PGE A 202 4 HET GOL A 203 6 HET NA A 204 1 HET ZN B 101 1 HET PGE B 102 4 HET GOL B 103 6 HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PGE 3(C6 H14 O4) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 NA NA 1+ FORMUL 7 ZN ZN 2+ FORMUL 10 HOH *28(H2 O) HELIX 1 AA1 ILE A 22 PHE A 33 1 12 HELIX 2 AA2 PRO A 34 PRO A 38 5 5 HELIX 3 AA3 TRP A 39 MET A 44 1 6 HELIX 4 AA4 THR A 81 TYR A 88 1 8 HELIX 5 AA5 ASP A 98 GLY A 100 5 3 HELIX 6 AA6 ALA A 101 LEU A 106 1 6 HELIX 7 AA7 CYS A 113 SER A 118 1 6 HELIX 8 AA8 SER A 151 ASN A 159 1 9 HELIX 9 AA9 ASP A 172 MET A 177 1 6 HELIX 10 AB1 PRO B 40 CYS B 44 5 5 HELIX 11 AB2 ASP B 49 PHE B 61 1 13 HELIX 12 AB3 PHE B 61 VAL B 70 1 10 SHEET 1 AA1 5 CYS A 14 GLN A 16 0 SHEET 2 AA1 5 VAL A 50 CYS A 55 -1 O ARG A 54 N ILE A 15 SHEET 3 AA1 5 ILE A 59 VAL A 64 -1 O ILE A 61 N VAL A 53 SHEET 4 AA1 5 GLU A 67 GLN A 73 -1 O LEU A 69 N LEU A 62 SHEET 5 AA1 5 TYR A 79 PRO A 80 -1 O TYR A 79 N PHE A 71 SHEET 1 AA2 5 HIS A 94 VAL A 97 0 SHEET 2 AA2 5 ILE A 131 ALA A 136 1 O ALA A 133 N GLN A 95 SHEET 3 AA2 5 CYS A 144 MET A 148 -1 O CYS A 144 N ILE A 134 SHEET 4 AA2 5 ILE A 162 TYR A 169 -1 O HIS A 168 N VAL A 145 SHEET 5 AA2 5 ILE A 111 MET A 112 -1 N ILE A 111 O ILE A 164 SSBOND 1 CYS A 14 CYS A 55 1555 1555 2.05 LINK SG CYS B 34 ZN ZN B 101 1555 1555 2.25 LINK SG CYS B 37 ZN ZN B 101 1555 1555 2.24 LINK SG CYS B 44 ZN ZN B 101 1555 1555 2.82 LINK SG CYS B 53 ZN ZN B 101 1555 1555 2.36 CISPEP 1 TYR B 27 PRO B 28 0 5.51 SITE 1 AC1 7 ALA A 101 PHE A 104 VAL A 105 ASN A 110 SITE 2 AC1 7 MET A 112 GLY A 115 ARG B 30 SITE 1 AC2 4 HIS A 94 GLN A 96 TYR A 124 NA A 204 SITE 1 AC3 2 GLU A 67 LYS A 103 SITE 1 AC4 3 HIS A 58 ARG A 74 PGE A 202 SITE 1 AC5 5 CYS B 34 VAL B 36 CYS B 37 CYS B 44 SITE 2 AC5 5 CYS B 53 SITE 1 AC6 2 ARG B 30 TYR B 33 SITE 1 AC7 2 ASN A 65 TYR B 46 CRYST1 67.810 67.810 124.750 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008016 0.00000