HEADER IMMUNE SYSTEM 18-OCT-18 6MSY TITLE ANTI-HIV-1 FAB FAB 2G12 + MAN4 RE-REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 2G12, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 2G12, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 16 EXPRESSION_SYSTEM_ORGAN: OVARY KEYWDS HIV-1 CARBOHYDRATE BROADLY NEUTRALIZING ANTIBODY, HIV NEUTRALIZING KEYWDS 2 ANTIBODY, ANTI-CARBOHYDRATE, DOMAIN-SWAPPING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.A.CALARESE,R.L.STANFIELD,I.A.WILSON REVDAT 4 11-OCT-23 6MSY 1 HETSYN LINK REVDAT 3 29-JUL-20 6MSY 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-JAN-20 6MSY 1 REMARK REVDAT 1 21-NOV-18 6MSY 0 SPRSDE 21-NOV-18 6MSY 1ZLS JRNL AUTH D.A.CALARESE,H.K.LEE,C.Y.HUANG,M.D.BEST,R.D.ASTRONOMO, JRNL AUTH 2 R.L.STANFIELD,H.KATINGER,D.R.BURTON,C.H.WONG,I.A.WILSON JRNL TITL DISSECTION OF THE CARBOHYDRATE SPECIFICITY OF THE BROADLY JRNL TITL 2 NEUTRALIZING ANTI-HIV-1 ANTIBODY 2G12. JRNL REF PROC. NATL. ACAD. SCI. V. 102 13372 2005 JRNL REF 2 U.S.A. JRNL REFN ISSN 0027-8424 JRNL PMID 16174734 JRNL DOI 10.1073/PNAS.0505763102 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 37772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3970 - 4.6935 0.92 2855 152 0.1853 0.2063 REMARK 3 2 4.6935 - 3.7281 0.91 2721 166 0.1706 0.2087 REMARK 3 3 3.7281 - 3.2576 0.96 2831 155 0.2029 0.2329 REMARK 3 4 3.2576 - 2.9601 0.96 2850 136 0.2193 0.2996 REMARK 3 5 2.9601 - 2.7481 0.97 2817 162 0.2301 0.2327 REMARK 3 6 2.7481 - 2.5862 0.96 2789 140 0.2232 0.2725 REMARK 3 7 2.5862 - 2.4567 0.95 2813 112 0.2281 0.2921 REMARK 3 8 2.4567 - 2.3499 0.95 2777 139 0.2271 0.2797 REMARK 3 9 2.3499 - 2.2594 0.95 2738 149 0.2375 0.2991 REMARK 3 10 2.2594 - 2.1815 0.95 2768 126 0.2555 0.2578 REMARK 3 11 2.1815 - 2.1133 0.94 2729 153 0.2395 0.2674 REMARK 3 12 2.1133 - 2.0529 0.94 2739 143 0.2432 0.2951 REMARK 3 13 2.0529 - 1.9989 0.86 2465 147 0.2420 0.3312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3348 REMARK 3 ANGLE : 1.565 4565 REMARK 3 CHIRALITY : 0.100 532 REMARK 3 PLANARITY : 0.010 572 REMARK 3 DIHEDRAL : 19.494 1227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4000, 0.05M SODIUM ACETATE, PH REMARK 280 6.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.15950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.15950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.15950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.15950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.60400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 471 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 442 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG L 211 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 SER H 129 REMARK 465 SER H 130 REMARK 465 LYS H 131 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 SER H 199 REMARK 465 LEU H 200 REMARK 465 GLY H 201 REMARK 465 THR H 202 REMARK 465 LYS H 228 REMARK 465 SER H 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP L 1 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP H 58 O ACT H 308 1.90 REMARK 500 UNK UNX L 301 O HOH L 464 2.05 REMARK 500 NE2 HIS H 32 UNK UNX H 301 2.11 REMARK 500 UNK UNX H 301 O HOH H 471 2.14 REMARK 500 NE2 HIS L 90 UNK UNX L 301 2.14 REMARK 500 UNK UNX H 301 O HOH H 463 2.17 REMARK 500 OD1 ASP H 58 C ACT H 308 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU L 30 -123.16 51.35 REMARK 500 ALA L 51 -36.86 70.92 REMARK 500 SER L 67 146.01 -178.73 REMARK 500 ALA L 84 -178.73 -175.55 REMARK 500 GLU L 143 106.74 -55.19 REMARK 500 ASN L 152 6.78 80.94 REMARK 500 LYS L 190 -62.53 -103.19 REMARK 500 SER H 53 13.98 55.12 REMARK 500 ASP H 76 64.02 64.46 REMARK 500 ASP H 100B -37.19 -35.30 REMARK 500 ASP H 146 63.96 63.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 489 DISTANCE = 5.81 ANGSTROMS DBREF 6MSY L 1 108 PDB 6MSY 6MSY 1 108 DBREF 6MSY L 109 213 UNP P0DOX7 IGK_HUMAN 109 213 DBREF 6MSY H 1 113 PDB 6MSY 6MSY 1 113 DBREF 6MSY H 114 229 UNP P0DOX5 IGG1_HUMAN 120 221 SEQRES 1 L 213 ASP VAL VAL MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP THR ILE THR ILE THR CYS ARG ALA SER SEQRES 3 L 213 GLN SER ILE GLU THR TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 L 213 THR LEU LYS THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR GLU PHE THR LEU THR ILE SER GLY LEU SEQRES 7 L 213 GLN PHE ASP ASP PHE ALA THR TYR HIS CYS GLN HIS TYR SEQRES 8 L 213 ALA GLY TYR SER ALA THR PHE GLY GLN GLY THR ARG VAL SEQRES 9 L 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLU SEQRES 1 H 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 225 ALA GLY GLY SER LEU ILE LEU SER CYS GLY VAL SER ASN SEQRES 3 H 225 PHE ARG ILE SER ALA HIS THR MET ASN TRP VAL ARG ARG SEQRES 4 H 225 VAL PRO GLY GLY GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 225 THR SER SER THR TYR ARG ASP TYR ALA ASP ALA VAL LYS SEQRES 6 H 225 GLY ARG PHE THR VAL SER ARG ASP ASP LEU GLU ASP PHE SEQRES 7 H 225 VAL TYR LEU GLN MET HIS LYS MET ARG VAL GLU ASP THR SEQRES 8 H 225 ALA ILE TYR TYR CYS ALA ARG LYS GLY SER ASP ARG LEU SEQRES 9 H 225 SER ASP ASN ASP PRO PHE ASP ALA TRP GLY PRO GLY THR SEQRES 10 H 225 VAL VAL THR VAL SER PRO ALA SER THR LYS GLY PRO SER SEQRES 11 H 225 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 225 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 225 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 225 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 225 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 225 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 225 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 225 GLU PRO LYS SER HET MAN A 1 12 HET MAN A 2 11 HET MAN A 3 11 HET MAN A 4 11 HET UNX L 301 1 HET UNX H 301 1 HET UNX H 302 1 HET UNX H 303 1 HET ACT H 308 7 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM UNX UNKNOWN ATOM OR ION HETNAM ACT ACETATE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 MAN 4(C6 H12 O6) FORMUL 4 UNX 4(X) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *161(H2 O) HELIX 1 AA1 GLN L 79 PHE L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 LYS L 188 1 6 HELIX 4 AA4 THR H 52A THR H 55 5 4 HELIX 5 AA5 ASP H 61 LYS H 64 5 4 HELIX 6 AA6 ARG H 83 THR H 87 5 5 HELIX 7 AA7 SER H 163 ALA H 165 5 3 HELIX 8 AA8 PRO H 214 ASN H 216 5 3 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 THR L 18 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 GLU L 70 SER L 76 -1 O LEU L 73 N ILE L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 THR L 10 ALA L 13 0 SHEET 2 AA2 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 THR L 85 TYR L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA2 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA2 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA3 4 THR L 10 ALA L 13 0 SHEET 2 AA3 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA3 4 THR L 85 TYR L 91 -1 N TYR L 86 O THR L 102 SHEET 4 AA3 4 ALA L 96 PHE L 98 -1 O THR L 97 N HIS L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 TYR L 192 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 PHE L 209 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA6 4 PHE H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA6 4 PHE H 67 ASP H 72 -1 N ASP H 72 O PHE H 77 SHEET 1 AA7 6 GLY H 10 LYS H 13 0 SHEET 2 AA7 6 THR H 107 SER H 112 1 O SER H 112 N VAL H 12 SHEET 3 AA7 6 ALA H 88 LYS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 6 MET H 34 ARG H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA7 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA7 6 ARG H 57 TYR H 59 -1 O ASP H 58 N SER H 50 SHEET 1 AA8 4 GLY H 10 LYS H 13 0 SHEET 2 AA8 4 THR H 107 SER H 112 1 O SER H 112 N VAL H 12 SHEET 3 AA8 4 ALA H 88 LYS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 4 PHE H 100F TRP H 103 -1 O ALA H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 AA9 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AA9 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 AB1 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AB1 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 AB2 3 VAL H 152 TRP H 157 0 SHEET 2 AB2 3 TYR H 206 HIS H 212 -1 O ASN H 211 N THR H 153 SHEET 3 AB2 3 THR H 217 VAL H 225 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.14 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.06 LINK O3 MAN A 1 C1 MAN A 2 1555 1555 1.44 LINK O2 MAN A 2 C1 MAN A 3 1555 1555 1.46 LINK O2 MAN A 3 C1 MAN A 4 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 1.23 CISPEP 2 TYR L 140 PRO L 141 0 -4.39 CISPEP 3 PHE H 148 PRO H 149 0 -10.42 CISPEP 4 GLU H 150 PRO H 151 0 -3.48 CRYST1 144.646 148.319 54.604 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018314 0.00000