HEADER TRANSFERASE 29-OCT-18 6MW5 TITLE UDP-GALACTOSE:GLUCOSIDE-SKP1 ALPHA-D-GALACTOSYLTRANSFERASE WITH BOUND TITLE 2 UDP AND PLATINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOSE:GLUCOSIDE-SKP1 ALPHA-D-GALACTOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.87; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYTHIUM ULTIMUM; SOURCE 3 ORGANISM_TAXID: 65071; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, GT-A FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.W.KIM,Z.A.WOOD,C.M.WEST REVDAT 4 13-MAR-24 6MW5 1 REMARK REVDAT 3 21-OCT-20 6MW5 1 JRNL REVDAT 2 01-JAN-20 6MW5 1 REMARK REVDAT 1 09-OCT-19 6MW5 0 JRNL AUTH M.MANDALASI,H.W.KIM,D.THIEKER,M.O.SHEIKH,E.GAS-PASCUAL, JRNL AUTH 2 K.RAHMAN,P.ZHAO,N.G.DANIEL,H.VAN DER WEL,H.T.ICHIKAWA, JRNL AUTH 3 J.N.GLUSHKA,L.WELLS,R.J.WOODS,Z.A.WOOD,C.M.WEST JRNL TITL A TERMINAL ALPHA 3-GALACTOSE MODIFICATION REGULATES AN E3 JRNL TITL 2 UBIQUITIN LIGASE SUBUNIT IN TOXOPLASMA GONDII . JRNL REF J.BIOL.CHEM. V. 295 9223 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32414843 JRNL DOI 10.1074/JBC.RA120.013792 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 29359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6978 - 4.6694 1.00 2602 139 0.1725 0.1747 REMARK 3 2 4.6694 - 3.7067 1.00 2592 142 0.1498 0.1902 REMARK 3 3 3.7067 - 3.2383 1.00 2598 137 0.1746 0.2507 REMARK 3 4 3.2383 - 2.9423 1.00 2607 133 0.1874 0.2293 REMARK 3 5 2.9423 - 2.7314 1.00 2616 133 0.1885 0.2561 REMARK 3 6 2.7314 - 2.5704 1.00 2588 138 0.1862 0.2318 REMARK 3 7 2.5704 - 2.4417 1.00 2601 142 0.2032 0.2660 REMARK 3 8 2.4417 - 2.3354 1.00 2601 137 0.2290 0.2833 REMARK 3 9 2.3354 - 2.2455 0.88 2282 124 0.4322 0.5367 REMARK 3 10 2.2455 - 2.1680 0.88 2266 122 0.3548 0.4652 REMARK 3 11 2.1680 - 2.1002 0.97 2530 129 0.3506 0.4165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2013 REMARK 3 ANGLE : 0.786 2743 REMARK 3 CHIRALITY : 0.053 293 REMARK 3 PLANARITY : 0.006 345 REMARK 3 DIHEDRAL : 13.253 711 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6188 38.8371 24.5716 REMARK 3 T TENSOR REMARK 3 T11: 0.3997 T22: 0.1993 REMARK 3 T33: 0.2550 T12: 0.0116 REMARK 3 T13: 0.0799 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.9163 L22: 1.4730 REMARK 3 L33: 1.1112 L12: -0.5645 REMARK 3 L13: -0.2270 L23: -0.4067 REMARK 3 S TENSOR REMARK 3 S11: -0.1301 S12: -0.3769 S13: 0.2356 REMARK 3 S21: 0.9980 S22: 0.0305 S23: 0.0789 REMARK 3 S31: -0.3512 S32: -0.0275 S33: -0.1264 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5823 44.4975 33.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.9097 T22: 0.3717 REMARK 3 T33: 0.2040 T12: 0.1232 REMARK 3 T13: 0.0463 T23: -0.1459 REMARK 3 L TENSOR REMARK 3 L11: 1.2753 L22: 1.0500 REMARK 3 L33: 1.0859 L12: 0.5343 REMARK 3 L13: -0.0660 L23: -0.9471 REMARK 3 S TENSOR REMARK 3 S11: 0.3345 S12: -0.5796 S13: 0.2661 REMARK 3 S21: 1.0970 S22: -0.3718 S23: 0.1718 REMARK 3 S31: -0.2363 S32: 0.0718 S33: 0.0729 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3885 29.0690 26.9659 REMARK 3 T TENSOR REMARK 3 T11: 0.6785 T22: 0.2684 REMARK 3 T33: 0.2109 T12: 0.0430 REMARK 3 T13: 0.2165 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.7877 L22: 1.5130 REMARK 3 L33: 0.6681 L12: -0.7476 REMARK 3 L13: -0.0642 L23: 0.7678 REMARK 3 S TENSOR REMARK 3 S11: -0.2078 S12: -0.7817 S13: -0.3676 REMARK 3 S21: 1.3046 S22: 0.2954 S23: 0.1231 REMARK 3 S31: 0.6145 S32: -0.3406 S33: 0.3642 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9459 31.1398 11.3741 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.2545 REMARK 3 T33: 0.2945 T12: -0.0454 REMARK 3 T13: 0.0809 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.4061 L22: 0.6777 REMARK 3 L33: 0.6668 L12: -0.4959 REMARK 3 L13: 0.0165 L23: -0.3434 REMARK 3 S TENSOR REMARK 3 S11: -0.1806 S12: 0.1874 S13: 0.1066 REMARK 3 S21: 0.1252 S22: 0.1216 S23: -0.0122 REMARK 3 S31: 0.0813 S32: -0.0922 S33: -0.0021 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8997 20.0034 19.7563 REMARK 3 T TENSOR REMARK 3 T11: 0.5512 T22: 0.2128 REMARK 3 T33: 0.3184 T12: -0.0143 REMARK 3 T13: 0.1046 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.6596 L22: 0.2554 REMARK 3 L33: 0.3464 L12: 0.2964 REMARK 3 L13: 0.1856 L23: 0.1325 REMARK 3 S TENSOR REMARK 3 S11: -0.2301 S12: 0.0931 S13: -0.3036 REMARK 3 S21: 0.3683 S22: 0.1124 S23: -0.1582 REMARK 3 S31: 0.4894 S32: 0.0440 S33: -0.0232 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5900 21.8869 14.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.3944 T22: 0.3888 REMARK 3 T33: 0.4728 T12: 0.0397 REMARK 3 T13: 0.1198 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9277 L22: 0.2533 REMARK 3 L33: 2.7357 L12: -0.2837 REMARK 3 L13: 1.5337 L23: -0.6160 REMARK 3 S TENSOR REMARK 3 S11: -0.4475 S12: 0.0621 S13: -0.1568 REMARK 3 S21: -0.1768 S22: -0.0402 S23: -0.6652 REMARK 3 S31: 0.2247 S32: 1.1283 S33: -0.1247 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0954 25.5990 5.7831 REMARK 3 T TENSOR REMARK 3 T11: 0.3608 T22: 0.2079 REMARK 3 T33: 0.2776 T12: -0.0892 REMARK 3 T13: 0.1174 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.5516 L22: 0.2731 REMARK 3 L33: 0.1189 L12: 0.0516 REMARK 3 L13: -0.2118 L23: -0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.0988 S12: 0.3267 S13: -0.0318 REMARK 3 S21: -0.2352 S22: -0.0780 S23: 0.1994 REMARK 3 S31: 0.1967 S32: -0.2949 S33: -0.1130 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3128 43.4386 6.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.3621 REMARK 3 T33: 0.3889 T12: -0.0821 REMARK 3 T13: 0.0556 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.3861 L22: 0.8152 REMARK 3 L33: 0.4739 L12: 0.0379 REMARK 3 L13: -0.4785 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 0.2823 S13: 0.1903 REMARK 3 S21: -0.0162 S22: 0.0461 S23: -0.1974 REMARK 3 S31: -0.3210 S32: 0.1516 S33: 0.0053 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4975 52.1598 19.2568 REMARK 3 T TENSOR REMARK 3 T11: 0.5477 T22: 0.1720 REMARK 3 T33: 0.4356 T12: -0.0323 REMARK 3 T13: 0.1524 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.3165 L22: 0.0785 REMARK 3 L33: 3.0877 L12: -0.1388 REMARK 3 L13: 0.5062 L23: -0.4374 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.0354 S13: 0.2196 REMARK 3 S21: 0.1357 S22: 0.1859 S23: -0.0815 REMARK 3 S31: -0.6789 S32: -0.4128 S33: 0.1144 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0-4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.85 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (1.13_2998) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% PEG4000, 0.4M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.89000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.92000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.89000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.92000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.89000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.92000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.89000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.92000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 80 REMARK 465 ASP A 81 REMARK 465 GLU A 82 REMARK 465 VAL A 83 REMARK 465 THR A 84 REMARK 465 ASP A 85 REMARK 465 ARG A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 VAL A 89 REMARK 465 HIS A 90 REMARK 465 VAL A 91 REMARK 465 PRO A 92 REMARK 465 GLY A 93 REMARK 465 TRP A 94 REMARK 465 VAL A 95 REMARK 465 ASN A 96 REMARK 465 PRO A 242 REMARK 465 SER A 243 REMARK 465 ARG A 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 119 30.55 -95.61 REMARK 500 ASN A 158 104.27 -160.51 REMARK 500 GLU A 171 -36.05 -148.26 REMARK 500 ASN A 204 67.03 -159.16 REMARK 500 TYR A 232 58.91 -95.64 REMARK 500 SER A 234 -174.24 68.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A 301 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 ASP A 119 OD1 93.2 REMARK 620 3 ASP A 119 OD2 145.3 53.6 REMARK 620 4 HIS A 231 NE2 95.8 88.9 93.6 REMARK 620 5 UDP A 302 O3B 112.0 152.9 99.6 97.8 REMARK 620 6 UDP A 302 O1A 88.1 83.7 79.3 171.9 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 DBREF 6MW5 A 1 266 UNP K3WC47 K3WC47_PYTUL 1 266 SEQRES 1 A 266 MET THR VAL GLY THR ARG ARG ALA ALA TYR ALA THR LEU SEQRES 2 A 266 ILE THR SER ASP ALA TYR VAL MET GLY VAL GLU ALA LEU SEQRES 3 A 266 VAL TYR SER LEU PHE LYS ALA ARG VAL ALA PHE PRO LEU SEQRES 4 A 266 VAL VAL LEU HIS SER SER GLN VAL THR GLN PRO THR VAL SEQRES 5 A 266 ALA LYS LEU THR ARG PHE CYS ALA PRO PHE GLN SER SER SEQRES 6 A 266 THR TRP ARG ILE SER PHE ARG SER VAL PRO ASP ILE GLY SEQRES 7 A 266 ILE PRO ASP GLU VAL THR ASP ARG SER THR VAL HIS VAL SEQRES 8 A 266 PRO GLY TRP VAL ASN SER GLY TYR THR LYS LEU HIS ILE SEQRES 9 A 266 PHE ALA MET ASP ASP PHE GLU GLN ILE VAL TYR ILE ASP SEQRES 10 A 266 ALA ASP ALA ILE VAL LEU GLN ASN VAL ASP GLU LEU PHE SEQRES 11 A 266 ASP ARG SER THR SER PHE ALA ALA ALA PRO ASP VAL PHE SEQRES 12 A 266 PRO PRO ASP ARG PHE ASN ALA GLY VAL LEU VAL ILE ARG SEQRES 13 A 266 PRO ASN LYS GLN LEU PHE ALA ASP LEU LEU ALA LYS ALA SEQRES 14 A 266 LYS GLU LEU LYS SER TYR ASP GLY GLY ASP THR GLY PHE SEQRES 15 A 266 LEU ASN ALA PHE PHE PRO LYS TRP PHE GLU SER ASP ALA SEQRES 16 A 266 ALA SER ARG LEU PRO PHE GLY TYR ASN ALA GLN ARG THR SEQRES 17 A 266 MET TYR TRP LEU VAL ASN GLY LYS ASN PRO GLY TYR TRP SEQRES 18 A 266 ASN ALA VAL GLN PRO LEU LYS ILE LEU HIS TYR SER SER SEQRES 19 A 266 ASN PRO LYS PRO TRP GLU ASP PRO SER ARG LYS GLY ASP SEQRES 20 A 266 LEU GLU ILE LEU TRP TRP GLN MET TYR THR GLU SER ARG SEQRES 21 A 266 CYS MET SER PHE LEU GLY HET PT A 301 1 HET UDP A 302 25 HET EDO A 303 4 HETNAM PT PLATINUM (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PT PT 2+ FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *54(H2 O) HELIX 1 AA1 SER A 16 ALA A 18 5 3 HELIX 2 AA2 TYR A 19 ARG A 34 1 16 HELIX 3 AA3 THR A 48 ALA A 60 1 13 HELIX 4 AA4 PRO A 61 GLN A 63 5 3 HELIX 5 AA5 TYR A 99 MET A 107 5 9 HELIX 6 AA6 VAL A 126 ARG A 132 5 7 HELIX 7 AA7 ASN A 158 ALA A 169 1 12 HELIX 8 AA8 GLY A 178 PHE A 187 1 10 HELIX 9 AA9 LYS A 189 SER A 193 5 5 HELIX 10 AB1 ASP A 194 ARG A 198 5 5 HELIX 11 AB2 PRO A 200 ASN A 204 5 5 HELIX 12 AB3 ARG A 207 ASN A 214 1 8 HELIX 13 AB4 ASN A 217 ALA A 223 1 7 HELIX 14 AB5 LYS A 237 ASP A 241 5 5 HELIX 15 AB6 GLY A 246 GLY A 266 1 21 SHEET 1 AA1 6 ILE A 69 SER A 73 0 SHEET 2 AA1 6 LEU A 39 HIS A 43 1 N VAL A 41 O SER A 70 SHEET 3 AA1 6 ALA A 9 ILE A 14 1 N TYR A 10 O VAL A 40 SHEET 4 AA1 6 ILE A 113 ILE A 116 1 O ILE A 116 N ALA A 11 SHEET 5 AA1 6 PHE A 148 ILE A 155 -1 O LEU A 153 N TYR A 115 SHEET 6 AA1 6 PHE A 136 PRO A 140 -1 N ALA A 139 O ASN A 149 SHEET 1 AA2 3 ALA A 120 VAL A 122 0 SHEET 2 AA2 3 ILE A 229 HIS A 231 -1 O LEU A 230 N ILE A 121 SHEET 3 AA2 3 ALA A 205 GLN A 206 1 N ALA A 205 O ILE A 229 LINK OD2 ASP A 117 PT PT A 301 1555 1555 2.38 LINK OD1 ASP A 119 PT PT A 301 1555 1555 2.36 LINK OD2 ASP A 119 PT PT A 301 1555 1555 2.47 LINK NE2 HIS A 231 PT PT A 301 1555 1555 2.23 LINK PT PT A 301 O3B UDP A 302 1555 1555 2.05 LINK PT PT A 301 O1A UDP A 302 1555 1555 2.18 CISPEP 1 PHE A 143 PRO A 144 0 -13.80 CISPEP 2 GLN A 225 PRO A 226 0 -4.60 CISPEP 3 ASN A 235 PRO A 236 0 -0.36 SITE 1 AC1 4 ASP A 117 ASP A 119 HIS A 231 UDP A 302 SITE 1 AC2 12 LEU A 13 ILE A 14 THR A 15 SER A 16 SITE 2 AC2 12 TYR A 19 ASP A 117 ALA A 118 ASP A 119 SITE 3 AC2 12 HIS A 231 SER A 234 LYS A 237 PT A 301 SITE 1 AC3 3 LYS A 216 ASN A 217 SER A 234 CRYST1 83.780 83.780 75.840 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013186 0.00000