data_6MXQ # _entry.id 6MXQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6MXQ pdb_00006mxq 10.2210/pdb6mxq/pdb WWPDB D_1000237641 ? ? BMRB 30533 ? 10.13018/BMR30533 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-05-06 2 'Structure model' 1 1 2020-11-18 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_citation_author.name' 14 3 'Structure model' '_database_2.pdbx_DOI' 15 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6MXQ _pdbx_database_status.recvd_initial_deposition_date 2018-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation ; _pdbx_database_related.db_id 30533 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Walker, M.' 1 ? 'Shortridge, M.' 2 ? 'Varani, G.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 432 _citation.language ? _citation.page_first 1841 _citation.page_last 1855 _citation.title ;Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2020.01.001 _citation.pdbx_database_id_PubMed 31953146 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Walker, M.J.' 1 ? primary 'Shortridge, M.D.' 2 ? primary 'Albin, D.D.' 3 ? primary 'Cominsky, L.Y.' 4 ? primary 'Varani, G.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA C-JUN TL' _entity.formula_weight 15523.181 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCAGUAUAGUCCGAACUGCAACUUCGGUUCACCUUCUCUCUAACUGCC _entity_poly.pdbx_seq_one_letter_code_can GGCAGUAUAGUCCGAACUGCAACUUCGGUUCACCUUCUCUCUAACUGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 G n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 C n 1 18 U n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 C n 1 24 U n 1 25 U n 1 26 C n 1 27 G n 1 28 G n 1 29 U n 1 30 U n 1 31 C n 1 32 A n 1 33 C n 1 34 C n 1 35 U n 1 36 U n 1 37 C n 1 38 U n 1 39 C n 1 40 U n 1 41 C n 1 42 U n 1 43 A n 1 44 A n 1 45 C n 1 46 U n 1 47 G n 1 48 C n 1 49 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 49 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 93 93 G G A . n A 1 2 G 2 94 94 G G A . n A 1 3 C 3 95 95 C C A . n A 1 4 A 4 96 96 A A A . n A 1 5 G 5 97 97 G G A . n A 1 6 U 6 98 98 U U A . n A 1 7 A 7 99 99 A A A . n A 1 8 U 8 100 100 U U A . n A 1 9 A 9 101 101 A A A . n A 1 10 G 10 102 102 G G A . n A 1 11 U 11 103 103 U U A . n A 1 12 C 12 104 104 C C A . n A 1 13 C 13 105 105 C C A . n A 1 14 G 14 106 106 G G A . n A 1 15 A 15 107 107 A A A . n A 1 16 A 16 108 108 A A A . n A 1 17 C 17 109 109 C C A . n A 1 18 U 18 110 110 U U A . n A 1 19 G 19 111 111 G G A . n A 1 20 C 20 112 112 C C A . n A 1 21 A 21 113 113 A A A . n A 1 22 A 22 114 114 A A A . n A 1 23 C 23 1 1 C C A . n A 1 24 U 24 2 2 U U A . n A 1 25 U 25 3 3 U U A . n A 1 26 C 26 4 4 C C A . n A 1 27 G 27 5 5 G G A . n A 1 28 G 28 6 6 G G A . n A 1 29 U 29 128 128 U U A . n A 1 30 U 30 129 129 U U A . n A 1 31 C 31 130 130 C C A . n A 1 32 A 32 131 131 A A A . n A 1 33 C 33 132 132 C C A . n A 1 34 C 34 133 133 C C A . n A 1 35 U 35 134 134 U U A . n A 1 36 U 36 135 135 U U A . n A 1 37 C 37 136 136 C C A . n A 1 38 U 38 137 137 U U A . n A 1 39 C 39 138 138 C C A . n A 1 40 U 40 139 139 U U A . n A 1 41 C 41 140 140 C C A . n A 1 42 U 42 141 141 U U A . n A 1 43 A 43 142 142 A A A . n A 1 44 A 44 143 143 A A A . n A 1 45 C 45 144 144 C C A . n A 1 46 U 46 145 145 U U A . n A 1 47 G 47 146 146 G G A . n A 1 48 C 48 147 147 C C A . n A 1 49 C 49 148 148 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6MXQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6MXQ _struct.title ;Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6MXQ _struct_keywords.text 'RNA, c-JUN, mRNA, eIF3, cap-dependent, specialized translation initiation' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6MXQ _struct_ref.pdbx_db_accession 6MXQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6MXQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 49 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6MXQ _struct_ref_seq.db_align_beg 93 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 93 _struct_ref_seq.pdbx_auth_seq_align_end 148 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 1 A G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 1 A G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 1 A G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 24 O2 ? ? ? 1_555 A G 27 N1 ? ? A U 2 A G 5 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog5 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 93 A C 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 93 A C 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 93 A C 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 94 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 94 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 94 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 95 A G 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 95 A G 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 95 A G 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 96 A U 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 96 A U 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 97 A C 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 97 A C 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 97 A C 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 98 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 98 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 7 N6 ? ? ? 1_555 A A 43 N1 ? ? A A 99 A A 142 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 100 A A 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 100 A A 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 101 A U 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 101 A U 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 102 A C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 102 A C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 102 A C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 40 O4 ? ? A U 103 A U 139 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog30 hydrog ? ? A U 11 O2 ? ? ? 1_555 A U 40 N3 ? ? A U 103 A U 139 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 106 A C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 106 A C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 106 A C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 36 N3 ? ? A A 107 A U 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 36 O4 ? ? A A 107 A U 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 35 N3 ? ? A A 108 A U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 35 O4 ? ? A A 108 A U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 110 A A 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 32 N6 ? ? A U 110 A A 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 111 A C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 111 A C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 111 A C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 30 N3 ? ? A A 113 A U 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 113 A U 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A A 22 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 114 A U 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 22 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 114 A U 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H21 A G 102 ? ? O2 A C 140 ? ? 1.58 2 7 H21 A G 102 ? ? O2 A C 140 ? ? 1.58 3 8 H21 A G 102 ? ? O2 A C 140 ? ? 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 8 "C1'" A C 112 ? ? "O4'" A C 112 ? ? "C4'" A C 112 ? ? 103.49 109.70 -6.21 0.70 N 2 9 "C1'" A C 132 ? ? "O4'" A C 132 ? ? "C4'" A C 132 ? ? 103.08 109.70 -6.62 0.70 N # _pdbx_nmr_ensemble.entry_id 6MXQ _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6MXQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.0 mM RNA, 100% D2O' '100% D2O' TL-1 solution ? 2 '1.0 mM RNA, 90% H2O/10% D2O' '90% H2O/10% D2O' TL-2 solution ? 3 ;1.0 mM [A,G-98% D3',4',5',5"; C,U-98%: D3',4',5, 5',5"] RNA, 100% D2O ; '100% D2O' TL-3 solution ? 4 '1.0 mM [A,C,G,U-98% 13C, A,C,G,U-98% 15N] RNA, 100% D2O' '100% D2O' TL-4 solution ? 5 '1.0 mM [A,C,G,U-98% 13C, A,C,G,U-98% 15N] RNA, 90% H2O/10% D2O' '90% H2O/10% D2O' TL-5 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 RNA 1.0 ? mM 'natural abundance' 2 RNA 1.0 ? mM 'natural abundance' 3 RNA 1.0 ? mM ;[A,G-98% D3',4',5',5"; C,U-98%: D3',4',5, 5',5"] ; 4 RNA 1.0 ? mM '[A,C,G,U-98% 13C, A,C,G,U-98% 15N]' 5 RNA 1.0 ? mM '[A,C,G,U-98% 13C, A,C,G,U-98% 15N]' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 6.1 '20mM Sodium Phosphate' ? ? 'Not defined' conditions-1 ? pH ? ? K 2 278 atm 1 6.1 '20mM Sodium Phosphate' ? ? 'Not defined' conditions-2 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 2 2 '2D 1H-1H NOESY' 1 isotropic 3 1 3 '2D 1H-1H NOESY' 1 isotropic 4 1 4 '3D 1H-13C NOESY' 1 isotropic 5 2 5 '2D 1H-15N HSQC' 2 isotropic 6 1 4 '2D 1H-13C HSQC' 1 isotropic 7 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 6MXQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 3 collection TopSpin ? 'Bruker Biospin' 4 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 5 'peak picking' Sparky ? Goddard 6 'peak picking' 'CcpNmr Analysis' ? CCPN 1 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 7 'chemical shift assignment' TopSpin ? 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6MXQ 'double helix' 6MXQ 'a-form double helix' 6MXQ tetraloop 6MXQ 'bulge loop' 6MXQ 'mismatched base pair' 6MXQ 'internal loop' 6MXQ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 49 1_555 -0.020 -0.215 -0.726 11.592 27.512 -9.047 1 A_G93:C148_A A 93 ? A 148 ? 19 1 1 A G 2 1_555 A C 48 1_555 -0.454 -0.059 0.092 2.116 -7.913 1.889 2 A_G94:C147_A A 94 ? A 147 ? 19 1 1 A C 3 1_555 A G 47 1_555 0.064 -0.053 0.076 4.748 -10.583 2.090 3 A_C95:G146_A A 95 ? A 146 ? 19 1 1 A A 4 1_555 A U 46 1_555 -0.392 -0.149 0.052 1.038 -12.469 -1.014 4 A_A96:U145_A A 96 ? A 145 ? 20 1 1 A G 5 1_555 A C 45 1_555 -0.267 -0.108 0.176 -3.238 -17.917 -0.136 5 A_G97:C144_A A 97 ? A 144 ? 19 1 1 A U 6 1_555 A A 44 1_555 -0.421 0.004 0.102 -1.339 -17.419 -14.311 6 A_U98:A143_A A 98 ? A 143 ? 20 1 1 A U 8 1_555 A A 43 1_555 -0.542 -0.172 0.016 0.027 -0.906 -3.707 7 A_U100:A142_A A 100 ? A 142 ? 20 1 1 A A 9 1_555 A U 42 1_555 -0.005 -0.002 0.017 1.141 -2.332 -0.176 8 A_A101:U141_A A 101 ? A 141 ? 20 1 1 A G 10 1_555 A C 41 1_555 -0.065 -0.078 0.126 1.085 -10.354 5.912 9 A_G102:C140_A A 102 ? A 140 ? 19 1 1 A U 11 1_555 A U 40 1_555 1.818 -1.482 0.273 -1.992 -14.319 2.690 10 A_U103:U139_A A 103 ? A 139 ? 16 1 1 A G 14 1_555 A C 37 1_555 -0.561 -0.137 -0.248 0.558 -2.052 4.824 11 A_G106:C136_A A 106 ? A 136 ? 19 1 1 A A 15 1_555 A U 36 1_555 -0.336 -0.195 -0.106 1.113 -5.331 1.261 12 A_A107:U135_A A 107 ? A 135 ? 20 1 1 A A 16 1_555 A U 35 1_555 -0.128 -0.168 0.124 1.718 -12.735 5.142 13 A_A108:U134_A A 108 ? A 134 ? 20 1 1 A U 18 1_555 A A 32 1_555 0.038 0.043 0.104 -2.590 -13.030 -15.792 14 A_U110:A131_A A 110 ? A 131 ? 20 1 1 A G 19 1_555 A C 31 1_555 0.094 0.034 0.135 1.365 -12.971 -4.426 15 A_G111:C130_A A 111 ? A 130 ? 19 1 1 A A 21 1_555 A U 30 1_555 -0.555 -0.211 -0.038 -2.054 -15.669 1.882 16 A_A113:U129_A A 113 ? A 129 ? 20 1 1 A A 22 1_555 A U 29 1_555 -0.050 -0.214 -0.082 -5.846 -8.351 0.368 17 A_A114:U128_A A 114 ? A 128 ? 20 1 1 A C 23 1_555 A G 28 1_555 1.084 -0.324 -0.007 2.066 3.781 5.651 18 A_C1:G6_A A 1 ? A 6 ? 19 1 1 A U 24 1_555 A G 27 1_555 1.103 -3.209 -0.480 -23.694 10.450 -99.516 19 A_U2:G5_A A 2 ? A 5 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 49 1_555 A G 2 1_555 A C 48 1_555 -0.419 -1.416 3.763 -8.776 -3.933 34.465 -1.631 -0.826 3.883 -6.483 14.467 35.742 1 AA_G93G94:C147C148_AA A 93 ? A 148 ? A 94 ? A 147 ? 1 A G 2 1_555 A C 48 1_555 A C 3 1_555 A G 47 1_555 0.054 -1.498 3.225 0.317 4.256 33.286 -3.264 -0.044 3.016 7.392 -0.551 33.551 2 AA_G94C95:G146C147_AA A 94 ? A 147 ? A 95 ? A 146 ? 1 A C 3 1_555 A G 47 1_555 A A 4 1_555 A U 46 1_555 -0.114 -1.616 3.168 -0.503 7.811 30.126 -4.372 0.124 2.676 14.718 0.948 31.103 3 AA_C95A96:U145G146_AA A 95 ? A 146 ? A 96 ? A 145 ? 1 A A 4 1_555 A U 46 1_555 A G 5 1_555 A C 45 1_555 -0.005 -1.546 3.255 -0.478 4.368 33.193 -3.379 -0.068 3.033 7.604 0.833 33.475 4 AA_A96G97:C144U145_AA A 96 ? A 145 ? A 97 ? A 144 ? 1 A G 5 1_555 A C 45 1_555 A U 6 1_555 A A 44 1_555 -0.518 -1.637 3.111 0.978 2.820 34.186 -3.186 1.020 2.955 4.786 -1.659 34.312 5 AA_G97U98:A143C144_AA A 97 ? A 144 ? A 98 ? A 143 ? 1 A U 6 1_555 A A 44 1_555 A U 8 1_555 A A 43 1_555 -0.627 -2.323 5.205 21.587 12.661 42.998 -4.166 3.117 3.734 15.784 -26.911 49.450 6 AA_U98U100:A142A143_AA A 98 ? A 143 ? A 100 ? A 142 ? 1 A U 8 1_555 A A 43 1_555 A A 9 1_555 A U 42 1_555 0.164 -1.574 3.173 -0.393 10.267 31.760 -4.276 -0.344 2.552 18.175 0.697 33.340 7 AA_U100A101:U141A142_AA A 100 ? A 142 ? A 101 ? A 141 ? 1 A A 9 1_555 A U 42 1_555 A G 10 1_555 A C 41 1_555 0.421 -1.700 3.103 -0.966 8.346 28.394 -4.874 -1.003 2.497 16.562 1.916 29.587 8 AA_A101G102:C140U141_AA A 101 ? A 141 ? A 102 ? A 140 ? 1 A G 10 1_555 A C 41 1_555 A U 11 1_555 A U 40 1_555 -0.081 -1.230 3.511 0.434 6.027 40.153 -2.476 0.168 3.299 8.719 -0.628 40.586 9 AA_G102U103:U139C140_AA A 102 ? A 140 ? A 103 ? A 139 ? 1 A G 14 1_555 A C 37 1_555 A A 15 1_555 A U 36 1_555 -0.287 -1.543 3.219 -1.817 8.845 30.562 -4.303 0.218 2.691 16.337 3.357 31.837 10 AA_G106A107:U135C136_AA A 106 ? A 136 ? A 107 ? A 135 ? 1 A A 15 1_555 A U 36 1_555 A A 16 1_555 A U 35 1_555 0.149 -1.503 3.223 -1.693 5.834 32.037 -3.637 -0.544 2.900 10.454 3.033 32.593 11 AA_A107A108:U134U135_AA A 107 ? A 135 ? A 108 ? A 134 ? 1 A U 18 1_555 A A 32 1_555 A G 19 1_555 A C 31 1_555 0.379 -1.617 3.005 -1.360 8.893 33.617 -3.867 -0.812 2.493 15.043 2.301 34.766 12 AA_U110G111:C130A131_AA A 110 ? A 131 ? A 111 ? A 130 ? 1 A G 19 1_555 A C 31 1_555 A A 21 1_555 A U 30 1_555 -0.700 -1.567 3.257 -0.049 3.235 40.156 -2.632 1.011 3.128 4.702 0.071 40.281 13 AA_G111A113:U129C130_AA A 111 ? A 130 ? A 113 ? A 129 ? 1 A A 21 1_555 A U 30 1_555 A A 22 1_555 A U 29 1_555 -0.201 -1.662 3.323 -1.596 4.100 34.641 -3.383 0.096 3.118 6.851 2.667 34.911 14 AA_A113A114:U128U129_AA A 113 ? A 129 ? A 114 ? A 128 ? 1 A A 22 1_555 A U 29 1_555 A C 23 1_555 A G 28 1_555 0.126 -1.521 3.100 -2.116 2.953 33.588 -3.060 -0.534 2.947 5.092 3.649 33.778 15 AA_A114C1:G6U128_AA A 114 ? A 128 ? A 1 ? A 6 ? 1 A C 23 1_555 A G 28 1_555 A U 24 1_555 A G 27 1_555 -0.884 -1.111 3.750 22.451 12.854 88.703 -1.053 1.103 3.361 9.037 -15.784 91.639 16 AA_C1U2:G5G6_AA A 1 ? A 6 ? A 2 ? A 5 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 62-8160 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 800 ? 2 'AVANCE II' ? Bruker 600 ? # _atom_sites.entry_id 6MXQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_