HEADER PROTEIN BINDING 31-OCT-18 6MY0 TITLE STRUCTURE OF 53BP1 TANDEM TUDOR DOMAINS WITH E1549P AND D1550N TITLE 2 MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TP53-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P53BP1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53BP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS 53BP1, DNA DAMAGE RESPONSE, DNA DOUBLE-STRAND BREAKS, TUDOR DOMAIN, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.CUI,M.V.BOTUYAN,G.MER REVDAT 2 11-OCT-23 6MY0 1 JRNL REVDAT 1 27-NOV-19 6MY0 0 JRNL AUTH G.CUI,M.V.BOTUYAN,P.DRANE,Q.HU,B.BRAGANTINI,J.R.THOMPSON, JRNL AUTH 2 D.J.SCHULLER,A.DETAPPE,M.T.PERFETTI,L.I.JAMES,S.V.FRYE, JRNL AUTH 3 D.CHOWDHURY,G.MER JRNL TITL AN AUTOINHIBITED STATE OF 53BP1 REVEALED BY SMALL MOLECULE JRNL TITL 2 ANTAGONISTS AND PROTEIN ENGINEERING. JRNL REF NAT COMMUN V. 14 6091 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37773238 JRNL DOI 10.1038/S41467-023-41821-6 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 12596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5935 - 4.5741 1.00 1359 151 0.2206 0.2505 REMARK 3 2 4.5741 - 3.6314 1.00 1292 144 0.1530 0.1880 REMARK 3 3 3.6314 - 3.1726 1.00 1286 143 0.1691 0.2185 REMARK 3 4 3.1726 - 2.8826 1.00 1281 142 0.1703 0.2116 REMARK 3 5 2.8826 - 2.6761 1.00 1263 140 0.1891 0.2310 REMARK 3 6 2.6761 - 2.5183 1.00 1245 139 0.2091 0.2710 REMARK 3 7 2.5183 - 2.3922 1.00 1263 140 0.1948 0.2460 REMARK 3 8 2.3922 - 2.2881 1.00 1239 138 0.2092 0.2805 REMARK 3 9 2.2881 - 2.2000 0.88 1108 123 0.2091 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1929 REMARK 3 ANGLE : 0.540 2609 REMARK 3 CHIRALITY : 0.047 278 REMARK 3 PLANARITY : 0.003 335 REMARK 3 DIHEDRAL : 10.011 1137 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1482 THROUGH 1531 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2876 35.5491 51.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.1456 REMARK 3 T33: 0.1209 T12: 0.0462 REMARK 3 T13: -0.0098 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.8372 L22: 5.5349 REMARK 3 L33: 5.7816 L12: 0.5347 REMARK 3 L13: 0.1845 L23: -2.8193 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.0270 S13: 0.0845 REMARK 3 S21: 0.2152 S22: -0.1395 S23: -0.2016 REMARK 3 S31: -0.4345 S32: 0.1149 S33: 0.0941 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1532 THROUGH 1564 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0942 19.5618 47.7677 REMARK 3 T TENSOR REMARK 3 T11: 0.3219 T22: 0.1628 REMARK 3 T33: 0.1638 T12: -0.0407 REMARK 3 T13: 0.0463 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 4.4238 L22: 2.4934 REMARK 3 L33: 2.8078 L12: -1.8159 REMARK 3 L13: 2.5548 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: -0.0568 S13: -0.3407 REMARK 3 S21: 0.5628 S22: -0.0218 S23: 0.2250 REMARK 3 S31: 0.5383 S32: -0.3131 S33: -0.1329 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1565 THROUGH 1603 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6384 20.4177 48.3321 REMARK 3 T TENSOR REMARK 3 T11: 0.2716 T22: 0.1478 REMARK 3 T33: 0.0997 T12: 0.0251 REMARK 3 T13: 0.0050 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 6.6039 L22: 3.4932 REMARK 3 L33: 3.5053 L12: 1.3602 REMARK 3 L13: 0.8965 L23: 0.9562 REMARK 3 S TENSOR REMARK 3 S11: 0.1979 S12: -0.0488 S13: -0.3088 REMARK 3 S21: 0.3681 S22: -0.1167 S23: -0.2130 REMARK 3 S31: 0.4774 S32: -0.0042 S33: -0.0368 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1485 THROUGH 1542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8741 16.4173 70.1459 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.2014 REMARK 3 T33: 0.2031 T12: -0.0010 REMARK 3 T13: -0.0169 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.7768 L22: 4.2338 REMARK 3 L33: 3.2482 L12: 1.4317 REMARK 3 L13: -0.4626 L23: -1.4172 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: -0.1133 S13: -0.3110 REMARK 3 S21: 0.0630 S22: -0.2518 S23: -0.4382 REMARK 3 S31: -0.1356 S32: 0.6796 S33: 0.0771 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1543 THROUGH 1564 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0604 11.3223 77.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1217 REMARK 3 T33: 0.1186 T12: -0.0673 REMARK 3 T13: -0.0086 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.4569 L22: 6.1980 REMARK 3 L33: 2.0459 L12: -1.3140 REMARK 3 L13: -1.1750 L23: 0.9451 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.1585 S13: -0.2027 REMARK 3 S21: 0.3758 S22: -0.1109 S23: 0.2789 REMARK 3 S31: 0.3450 S32: -0.1493 S33: 0.0854 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1565 THROUGH 1589 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4140 8.8033 75.4017 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.0812 REMARK 3 T33: 0.1255 T12: -0.0080 REMARK 3 T13: -0.0214 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.3017 L22: 5.0916 REMARK 3 L33: 5.4752 L12: 0.6050 REMARK 3 L13: 0.2524 L23: 1.7357 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.0374 S13: -0.0901 REMARK 3 S21: 0.1682 S22: -0.0140 S23: 0.3170 REMARK 3 S31: 0.2362 S32: -0.4102 S33: 0.0392 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1590 THROUGH 1602 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0217 10.4850 80.4358 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.4743 REMARK 3 T33: 0.3774 T12: 0.1253 REMARK 3 T13: -0.1314 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 6.0887 L22: 3.5843 REMARK 3 L33: 0.1379 L12: -1.3002 REMARK 3 L13: -0.7564 L23: -0.2247 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -1.0061 S13: -0.2626 REMARK 3 S21: 0.4948 S22: 0.1373 S23: -0.6819 REMARK 3 S31: 0.4066 S32: 0.6995 S33: 0.1074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12755 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.587 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.08728 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55310 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2G3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM/POTASSIUM PHOSPHATE, PH REMARK 280 6.0, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.53000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.53000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1481 REMARK 465 GLY B 1481 REMARK 465 HIS B 1482 REMARK 465 MET B 1483 REMARK 465 ASN B 1484 REMARK 465 GLY B 1603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A1482 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A1550 CG OD1 ND2 REMARK 470 GLU A1551 CG CD OE1 OE2 REMARK 470 TYR A1552 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A1553 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A1567 CG CD OE1 OE2 REMARK 470 LYS A1574 CG CD CE NZ REMARK 470 GLU A1575 CG CD OE1 OE2 REMARK 470 GLN A1577 CG CD OE1 NE2 REMARK 470 LYS A1579 CG CD CE NZ REMARK 470 LYS A1582 CD CE NZ REMARK 470 ARG B1508 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1509 CG OD1 OD2 REMARK 470 GLU B1598 CG CD OE1 OE2 REMARK 470 GLN B1599 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1485 144.77 -174.20 REMARK 500 ARG B1508 141.83 -172.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 6MY0 A 1484 1603 UNP Q12888 TP53B_HUMAN 1484 1603 DBREF 6MY0 B 1484 1603 UNP Q12888 TP53B_HUMAN 1484 1603 SEQADV 6MY0 GLY A 1481 UNP Q12888 EXPRESSION TAG SEQADV 6MY0 HIS A 1482 UNP Q12888 EXPRESSION TAG SEQADV 6MY0 MET A 1483 UNP Q12888 EXPRESSION TAG SEQADV 6MY0 PRO A 1549 UNP Q12888 GLU 1549 ENGINEERED MUTATION SEQADV 6MY0 ASN A 1550 UNP Q12888 ASP 1550 ENGINEERED MUTATION SEQADV 6MY0 GLY B 1481 UNP Q12888 EXPRESSION TAG SEQADV 6MY0 HIS B 1482 UNP Q12888 EXPRESSION TAG SEQADV 6MY0 MET B 1483 UNP Q12888 EXPRESSION TAG SEQADV 6MY0 PRO B 1549 UNP Q12888 GLU 1549 ENGINEERED MUTATION SEQADV 6MY0 ASN B 1550 UNP Q12888 ASP 1550 ENGINEERED MUTATION SEQRES 1 A 123 GLY HIS MET ASN SER PHE VAL GLY LEU ARG VAL VAL ALA SEQRES 2 A 123 LYS TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE SEQRES 3 A 123 THR ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE SEQRES 4 A 123 ASP ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE SEQRES 5 A 123 LEU LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR SEQRES 6 A 123 ALA LEU SER PRO ASN GLU TYR PHE SER ALA GLY VAL VAL SEQRES 7 A 123 LYS GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER SEQRES 8 A 123 ILE GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET SEQRES 9 A 123 ALA VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG SEQRES 10 A 123 GLU GLN TYR GLY LEU GLY SEQRES 1 B 123 GLY HIS MET ASN SER PHE VAL GLY LEU ARG VAL VAL ALA SEQRES 2 B 123 LYS TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE SEQRES 3 B 123 THR ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE SEQRES 4 B 123 ASP ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE SEQRES 5 B 123 LEU LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR SEQRES 6 B 123 ALA LEU SER PRO ASN GLU TYR PHE SER ALA GLY VAL VAL SEQRES 7 B 123 LYS GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER SEQRES 8 B 123 ILE GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET SEQRES 9 B 123 ALA VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG SEQRES 10 B 123 GLU GLN TYR GLY LEU GLY FORMUL 3 HOH *129(H2 O) HELIX 1 AA1 SER A 1589 GLY A 1601 1 13 HELIX 2 AA2 SER B 1589 ARG B 1595 1 7 HELIX 3 AA3 LEU B 1596 GLY B 1601 1 6 SHEET 1 AA1 5 GLU A1524 LEU A1528 0 SHEET 2 AA1 5 LYS A1514 PHE A1519 -1 N LEU A1517 O CYS A1525 SHEET 3 AA1 5 TYR A1502 ASP A1509 -1 N LYS A1505 O LEU A1518 SHEET 4 AA1 5 ARG A1490 ALA A1493 -1 N VAL A1491 O GLY A1504 SHEET 5 AA1 5 ILE A1532 LEU A1533 -1 O LEU A1533 N VAL A1492 SHEET 1 AA2 5 GLN A1577 LYS A1582 0 SHEET 2 AA2 5 GLU A1567 LYS A1574 -1 N LYS A1574 O GLN A1577 SHEET 3 AA2 5 TYR A1552 GLU A1564 -1 N GLY A1560 O SER A1571 SHEET 4 AA2 5 GLU A1543 SER A1548 -1 N SER A1548 O TYR A1552 SHEET 5 AA2 5 VAL A1586 ILE A1587 -1 O ILE A1587 N THR A1545 SHEET 1 AA3 5 GLU B1524 LEU B1528 0 SHEET 2 AA3 5 LYS B1514 PHE B1519 -1 N TYR B1515 O VAL B1527 SHEET 3 AA3 5 TYR B1502 GLY B1511 -1 N THR B1507 O LYS B1516 SHEET 4 AA3 5 ARG B1490 ALA B1493 -1 N ALA B1493 O TYR B1502 SHEET 5 AA3 5 ILE B1532 LEU B1533 -1 O LEU B1533 N VAL B1492 SHEET 1 AA4 5 GLN B1577 LYS B1582 0 SHEET 2 AA4 5 GLU B1567 LYS B1574 -1 N TYR B1570 O TYR B1581 SHEET 3 AA4 5 TYR B1552 GLU B1564 -1 N LYS B1559 O SER B1571 SHEET 4 AA4 5 GLU B1543 SER B1548 -1 N ALA B1546 O SER B1554 SHEET 5 AA4 5 VAL B1586 ILE B1587 -1 O ILE B1587 N THR B1545 CISPEP 1 ASP A 1536 PRO A 1537 0 -4.57 CISPEP 2 ASP B 1536 PRO B 1537 0 -4.58 CRYST1 73.100 141.270 47.060 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021249 0.00000