HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 02-NOV-18 6MYT TITLE AVIAN MITOCHONDRIAL COMPLEX II WITH ATPENIN A5 BOUND, SIDECHAIN IN TITLE 2 POCKET COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 EC: 1.3.5.1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 8 MITOCHONDRIAL; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II,IP; COMPND 11 EC: 1.3.5.1; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B, LARGE SUBUNIT; COMPND 14 CHAIN: C; COMPND 15 EC: 1.3.5.1; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 18 SUBUNIT, MITOCHONDRIAL; COMPND 19 CHAIN: D; COMPND 20 SYNONYM: CYBS,SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D,SUCCINATE- COMPND 21 UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL SUBUNIT,SUCCINATE- COMPND 22 UBIQUINONE REDUCTASE MEMBRANE ANCHOR SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: HEART; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 8 ORGANISM_COMMON: CHICKEN; SOURCE 9 ORGANISM_TAXID: 9031; SOURCE 10 ORGAN: HEART; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 13 ORGANISM_COMMON: CHICKEN; SOURCE 14 ORGANISM_TAXID: 9031; SOURCE 15 ORGAN: HEART; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 18 ORGANISM_COMMON: CHICKEN; SOURCE 19 ORGANISM_TAXID: 9031; SOURCE 20 ORGAN: HEART KEYWDS COMPLEX II, MEMBRANE PROTEIN, HEME PROTEIN, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.BERRY,L.-S.HUANG REVDAT 4 11-OCT-23 6MYT 1 REMARK REVDAT 3 07-JUL-21 6MYT 1 COMPND JRNL HETNAM HETSYN REVDAT 3 2 1 LINK REVDAT 2 01-JAN-20 6MYT 1 REMARK REVDAT 1 06-NOV-19 6MYT 0 JRNL AUTH L.S.HUANG,P.LUMMEN,E.A.BERRY JRNL TITL CRYSTALLOGRAPHIC INVESTIGATION OF THE UBIQUINONE BINDING JRNL TITL 2 SITE OF RESPIRATORY COMPLEX II AND ITS INHIBITORS. JRNL REF BIOCHIM BIOPHYS ACTA V.1869 40679 2021 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 34089891 JRNL DOI 10.1016/J.BBAPAP.2021.140679 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.S.HUANG,G.SUN,D.COBESSI,A.C.WANG,J.T.SHEN,E.Y.TUNG, REMARK 1 AUTH 2 V.E.ANDERSON,E.A.BERRY REMARK 1 TITL 3-NITROPROPIONIC ACID IS A SUICIDE INHIBITOR OF REMARK 1 TITL 2 MITOCHONDRIAL RESPIRATION THAT, UPON OXIDATION BY COMPLEX REMARK 1 TITL 3 II, FORMS A COVALENT ADDUCT WITH A CATALYTIC BASE ARGININE REMARK 1 TITL 4 IN THE ACTIVE SITE OF THE ENZYME. REMARK 1 REF J. BIOL. CHEM. V. 281 5965 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16371358 REMARK 1 DOI 10.1074/JBC.M511270200 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.S.HUANG,J.T.SHEN,A.C.WANG,E.A.BERRY REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES OF THE BINDING OF LIGANDS TO THE REMARK 1 TITL 2 DICARBOXYLATE SITE OF COMPLEX II, AND THE IDENTITY OF THE REMARK 1 TITL 3 LIGAND IN THE "OXALOACETATE-INHIBITED" STATE. REMARK 1 REF BIOCHIM. BIOPHYS. ACTA V.1757 1073 2006 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 16935256 REMARK 1 DOI 10.1016/J.BBABIO.2006.06.015 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.S.HUANG,T.M.BORDERS,J.T.SHEN,C.J.WANG,E.A.BERRY REMARK 1 TITL CRYSTALLIZATION OF MITOCHONDRIAL RESPIRATORY COMPLEX II FROM REMARK 1 TITL 2 CHICKEN HEART: A MEMBRANE-PROTEIN COMPLEX DIFFRACTING TO 2.0 REMARK 1 TITL 3 A. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 61 380 2005 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15805592 REMARK 1 DOI 10.1107/S0907444905000181 REMARK 1 REFERENCE 4 REMARK 1 AUTH F.SUN,X.HUO,Y.ZHAI,A.WANG,J.XU,D.SU,M.BARTLAM,Z.RAO REMARK 1 TITL CRYSTAL STRUCTURE OF MITOCHONDRIAL RESPIRATORY MEMBRANE REMARK 1 TITL 2 PROTEIN COMPLEX II. REMARK 1 REF CELL V. 121 1043 2005 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 15989954 REMARK 1 DOI 10.1016/J.CELL.2005.05.025 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3150: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 70155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1937 - 5.5793 0.88 4868 150 0.1813 0.1989 REMARK 3 2 5.5793 - 4.4364 0.89 4695 152 0.1877 0.2048 REMARK 3 3 4.4364 - 3.8779 0.90 4723 145 0.1898 0.2076 REMARK 3 4 3.8779 - 3.5244 0.92 4743 160 0.2054 0.2669 REMARK 3 5 3.5244 - 3.2723 0.91 4747 133 0.2354 0.2633 REMARK 3 6 3.2723 - 3.0797 0.92 4755 125 0.2447 0.2842 REMARK 3 7 3.0797 - 2.9257 0.91 4682 156 0.2581 0.3345 REMARK 3 8 2.9257 - 2.7986 0.91 4643 144 0.2677 0.3364 REMARK 3 9 2.7986 - 2.6909 0.90 4644 133 0.2841 0.3542 REMARK 3 10 2.6909 - 2.5982 0.89 4567 125 0.3083 0.3847 REMARK 3 11 2.5982 - 2.5170 0.90 4623 146 0.3160 0.3389 REMARK 3 12 2.5170 - 2.4451 0.89 4598 130 0.3104 0.3528 REMARK 3 13 2.4451 - 2.3808 0.87 4452 122 0.3207 0.4126 REMARK 3 14 2.3808 - 2.3228 0.78 3957 113 0.3497 0.3889 REMARK 3 15 2.3228 - 2.2700 0.67 3413 111 0.3797 0.4731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 9105 REMARK 3 ANGLE : 0.533 12283 REMARK 3 CHIRALITY : 0.039 1328 REMARK 3 PLANARITY : 0.003 1531 REMARK 3 DIHEDRAL : 9.924 5366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.4176 18.5239 110.1542 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.4434 REMARK 3 T33: 0.4786 T12: 0.0168 REMARK 3 T13: -0.0152 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.5342 L22: 0.4147 REMARK 3 L33: 1.7652 L12: -0.1356 REMARK 3 L13: 0.4790 L23: -0.3833 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.1329 S13: -0.0682 REMARK 3 S21: -0.0285 S22: -0.0326 S23: -0.0120 REMARK 3 S31: 0.1599 S32: 0.2729 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DUAL REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 25.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 2.150 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.53 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1YQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 47 G/L PEG3350, 30 ML/L PEG400, 23 REMARK 280 ML/L ISOPROPANOL, 0.05 M HEPES SODIUM, 0.01 M TRIS-HCL, 3.1 MM REMARK 280 MANGANESE CHLORIDE, 0.62 MM MAGNESIUM CHLORIDE, 1.5 MM SODIUM REMARK 280 AZIDE, 0.25 MM SODIUM EDTA, 10 G/L OCTYL BETA-D-GLUCOSIDE, REMARK 280 UNDECYL-BETA-D-MALTOSIDE, CRYSTAL WAS SOAKED WITH ATPENIN A5 REMARK 280 AFTER CRYSTALLIZATION, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.99600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.17200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 145.17200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.99600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 MET C 1 REMARK 465 GLY D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 494 CB CG CD OE1 OE2 REMARK 470 SER D 2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 56 C8M FAD A 1001 2.16 REMARK 500 NH2 ARG A 297 C2 OAA A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 -50.41 -123.74 REMARK 500 ALA A 150 -111.62 50.83 REMARK 500 ASP A 169 30.70 -81.86 REMARK 500 THR A 255 74.79 -110.27 REMARK 500 ASN A 277 -157.10 -97.30 REMARK 500 LYS A 292 -127.49 61.26 REMARK 500 ALA A 348 -1.81 -143.64 REMARK 500 HIS A 364 -49.87 -136.90 REMARK 500 ASN A 407 116.99 -163.73 REMARK 500 ASP A 460 40.73 -148.70 REMARK 500 ALA A 481 -149.15 -84.65 REMARK 500 LYS A 543 69.11 -102.21 REMARK 500 THR A 605 -168.59 -107.94 REMARK 500 ASN A 607 113.26 -164.88 REMARK 500 ARG B 10 86.69 -153.31 REMARK 500 SER B 64 -73.60 -163.55 REMARK 500 ARG B 66 28.91 40.18 REMARK 500 CYS B 73 32.09 -93.16 REMARK 500 ASP B 110 -107.45 52.56 REMARK 500 GLU B 126 72.98 55.54 REMARK 500 LYS B 139 -62.92 -143.84 REMARK 500 HIS C 26 -61.86 -149.48 REMARK 500 ASP D 90 -159.24 -119.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 1005 REMARK 610 HEM C 201 REMARK 610 3PE D 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 UNL A1004 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 121 OE1 REMARK 620 2 HIS A 505 NE2 61.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 366 O REMARK 620 2 MET A 367 O 74.4 REMARK 620 3 GLY A 368 O 71.9 70.5 REMARK 620 4 GLU A 397 O 97.2 154.4 83.9 REMARK 620 5 ALA A 399 O 174.7 102.8 103.0 83.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B1001 S1 119.4 REMARK 620 3 FES B1001 S2 105.1 90.9 REMARK 620 4 CYS B 70 SG 112.4 111.8 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B1001 S1 112.7 REMARK 620 3 FES B1001 S2 127.0 91.0 REMARK 620 4 CYS B 85 SG 104.1 121.6 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1002 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B1002 S1 125.0 REMARK 620 3 SF4 B1002 S2 98.3 104.8 REMARK 620 4 SF4 B1002 S4 118.0 103.9 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1002 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B1002 S1 126.0 REMARK 620 3 SF4 B1002 S2 117.8 104.9 REMARK 620 4 SF4 B1002 S3 96.6 104.0 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B1002 S2 117.9 REMARK 620 3 SF4 B1002 S3 115.0 104.0 REMARK 620 4 SF4 B1002 S4 110.3 103.9 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B1003 S1 121.8 REMARK 620 3 F3S B1003 S2 106.6 112.5 REMARK 620 4 F3S B1003 S3 108.0 103.1 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B1003 S2 114.7 REMARK 620 3 F3S B1003 S3 120.8 103.9 REMARK 620 4 F3S B1003 S4 99.2 115.4 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B1003 S1 108.6 REMARK 620 3 F3S B1003 S3 116.4 103.7 REMARK 620 4 F3S B1003 S4 110.4 115.2 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B1002 S1 111.7 REMARK 620 3 SF4 B1002 S3 108.8 103.7 REMARK 620 4 SF4 B1002 S4 122.5 103.8 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 98 NE2 REMARK 620 2 HEM C 201 NA 96.9 REMARK 620 3 HEM C 201 NB 90.3 90.4 REMARK 620 4 HEM C 201 NC 86.6 176.5 90.1 REMARK 620 5 HEM C 201 ND 89.2 91.2 178.4 88.3 REMARK 620 6 HIS D 46 NE2 172.4 77.1 85.2 99.5 95.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F3S B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AT5 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMQ C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PE D 201 DBREF 6MYT A 1 621 UNP F1NPJ4 F1NPJ4_CHICK 45 665 DBREF 6MYT B 1 252 UNP Q9YHT2 SDHB_CHICK 39 290 DBREF 6MYT C 1 140 UNP D0VWW3 D0VWW3_CHICK 1 140 DBREF 6MYT D 1 103 UNP Q5ZIS0 DHSD_CHICK 55 157 SEQADV 6MYT ALA C 139 UNP D0VWW3 SER 139 CONFLICT SEQADV 6MYT MET C 140 UNP D0VWW3 GLU 140 CONFLICT SEQRES 1 A 621 SER THR LYS VAL SER ASP SER ILE SER THR GLN TYR PRO SEQRES 2 A 621 VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY ALA SEQRES 3 A 621 GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER GLU SEQRES 4 A 621 ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE PRO SEQRES 5 A 621 THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE ASN SEQRES 6 A 621 ALA ALA LEU GLY ASN MET GLU ASP ASP ASN TRP ARG TRP SEQRES 7 A 621 HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU GLY SEQRES 8 A 621 ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA PRO SEQRES 9 A 621 ALA ALA VAL ILE GLU LEU GLU ASN TYR GLY MET PRO PHE SEQRES 10 A 621 SER ARG THR GLU GLU GLY LYS ILE TYR GLN ARG ALA PHE SEQRES 11 A 621 GLY GLY GLN SER LEU GLN PHE GLY LYS GLY GLY GLN ALA SEQRES 12 A 621 HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SER SEQRES 13 A 621 LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR ASP SEQRES 14 A 621 THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU LEU SEQRES 15 A 621 MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU CYS SEQRES 16 A 621 ILE GLU ASP GLY THR ILE HIS ARG PHE ARG ALA LYS ASN SEQRES 17 A 621 THR VAL ILE ALA THR GLY GLY TYR GLY ARG THR TYR PHE SEQRES 18 A 621 SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY THR SEQRES 19 A 621 ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP LEU SEQRES 20 A 621 GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY ALA SEQRES 21 A 621 GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY GLY SEQRES 22 A 621 ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU ARG SEQRES 23 A 621 TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP VAL SEQRES 24 A 621 VAL SER ARG SER MET THR ILE GLU ILE ARG GLU GLY ARG SEQRES 25 A 621 GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN LEU SEQRES 26 A 621 HIS HIS LEU PRO PRO GLN GLN LEU ALA THR ARG LEU PRO SEQRES 27 A 621 GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL ASP SEQRES 28 A 621 VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL HIS SEQRES 29 A 621 TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY GLN SEQRES 30 A 621 VAL ILE THR HIS VAL ASN GLY GLU ASP LYS VAL VAL PRO SEQRES 31 A 621 GLY LEU TYR ALA CYS GLY GLU ALA ALA SER ALA SER VAL SEQRES 32 A 621 HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU ASP SEQRES 33 A 621 LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU THR ILE ALA SEQRES 34 A 621 GLU THR CYS LYS PRO GLY GLU PRO VAL PRO SER ILE LYS SEQRES 35 A 621 PRO ASN ALA GLY GLU GLU SER VAL ALA ASN LEU ASP LYS SEQRES 36 A 621 LEU ARG PHE ALA ASP GLY THR ILE ARG THR SER GLU ALA SEQRES 37 A 621 ARG LEU ASN MET GLN LYS THR MET GLN SER HIS ALA ALA SEQRES 38 A 621 VAL PHE ARG THR GLY SER ILE LEU GLN GLU GLY CYS GLU SEQRES 39 A 621 LYS LEU SER GLN ILE TYR ARG ASP LEU ALA HIS LEU LYS SEQRES 40 A 621 THR PHE ASP ARG GLY ILE VAL TRP ASN THR ASP LEU VAL SEQRES 41 A 621 GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA LEU SEQRES 42 A 621 GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER ARG SEQRES 43 A 621 GLY ALA HIS ALA ARG GLU ASP TYR LYS LEU ARG ILE ASP SEQRES 44 A 621 GLU PHE ASP TYR SER LYS PRO LEU GLN GLY GLN GLN LYS SEQRES 45 A 621 ARG PRO PHE GLU GLU HIS TRP ARG LYS HIS THR LEU SER SEQRES 46 A 621 TYR VAL ASP VAL LYS SER GLY LYS VAL THR LEU LYS TYR SEQRES 47 A 621 ARG PRO VAL ILE ASP ARG THR LEU ASN GLU GLU ASP CYS SEQRES 48 A 621 SER SER VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA ALA THR SER ARG ILE LYS LYS SEQRES 2 B 252 PHE SER ILE TYR ARG TRP ASP PRO ASP LYS PRO GLY ASP SEQRES 3 B 252 LYS PRO ARG MET GLN THR TYR GLU VAL ASP LEU ASN LYS SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU LEU ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ALA SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR LYS LYS ILE ASP PRO SEQRES 8 B 252 ASP LEU SER LYS THR THR LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL VAL LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER LYS GLN GLY LYS GLU GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU ASP ARG GLN LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP TYR THR GLU GLU ARG LEU ALA GLN LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR ARG THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS ALA ALA ALA ALA SEQRES 1 C 140 MET ALA THR THR ALA LYS GLU GLU MET ALA ARG PHE TRP SEQRES 2 C 140 GLU MLZ ASN THR LYS SER SER ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE SER ILE TYR LYS TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE THR HIS ARG GLY THR GLY VAL ALA LEU SER LEU GLY SEQRES 5 C 140 VAL SER LEU PHE SER LEU ALA ALA LEU LEU LEU PRO GLU SEQRES 6 C 140 GLN PHE PRO HIS TYR VAL ALA VAL VAL LYS SER LEU SER SEQRES 7 C 140 LEU SER PRO ALA LEU ILE TYR SER ALA LYS PHE ALA LEU SEQRES 8 C 140 VAL PHE PRO LEU SER TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU VAL TRP ASP MET GLY LYS GLY PHE LYS LEU SER SEQRES 10 C 140 GLN VAL GLU GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 LEU LEU SER SER ALA ALA ILE ALA ALA MET SEQRES 1 D 103 GLY SER SER LYS ALA ALA SER LEU HIS TRP THR SER GLU SEQRES 2 D 103 ARG ALA VAL SER ALA LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU TYR PRO GLY PRO ALA VAL ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY LEU GLY SEQRES 5 D 103 GLN VAL ILE THR ASP TYR VAL HIS GLY ASP THR PRO ILE SEQRES 6 D 103 LYS VAL ALA ASN THR GLY LEU TYR VAL LEU SER ALA ILE SEQRES 7 D 103 THR PHE THR GLY LEU CYS TYR PHE ASN TYR TYR ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP SER ILE MODRES 6MYT MLZ C 15 LYS MODIFIED RESIDUE HET MLZ C 15 10 HET FAD A1001 53 HET OAA A1002 9 HET K A1003 1 HET UNL A1004 5 HET PEG A1005 5 HET UNL A1006 7 HET UNL A1007 4 HET UNL A1008 4 HET UNL A1009 4 HET UNL A1010 4 HET UNL A1011 4 HET UNL A1012 2 HET UNL A1013 3 HET UNL A1014 6 HET UNL A1015 3 HET UNL A1016 2 HET UNL A1017 2 HET UNL A1018 3 HET UNL A1019 3 HET UNL A1020 3 HET UNL A1021 1 HET UNL A1022 1 HET UNL A1023 1 HET UNL A1024 1 HET UNL A1025 1 HET UNL A1026 1 HET UNL A1027 1 HET UNL A1028 1 HET FES B1001 4 HET SF4 B1002 8 HET F3S B1003 7 HET UNL B1004 4 HET UNL B1005 3 HET UNL B1006 3 HET UNL B1007 3 HET UNL B1008 3 HET UNL B1009 4 HET UNL B1010 4 HET UNL B1011 2 HET UNL B1012 3 HET UNL B1013 4 HET UNL B1014 7 HET UNL B1015 1 HET UNL B1016 1 HET UNL B1017 1 HET UNL B1018 1 HET UNL B1019 1 HET UNL B1020 1 HET UNL B1021 1 HET UNL B1022 2 HET AT5 C 202 23 HET HEM C 201 41 HET UMQ C 203 34 HET UNL C 204 3 HET UNL C 205 3 HET UNL C 206 15 HET UNL C 207 12 HET UNL C 208 5 HET UNL C 209 3 HET UNL C 210 15 HET UNL C 211 4 HET UNL C 212 1 HET 3PE D 201 42 HET UNL D 202 9 HET UNL D 203 5 HET UNL D 204 5 HET UNL D 205 12 HET UNL D 206 12 HET UNL D 207 10 HET UNL D 208 1 HETNAM MLZ N-METHYL-LYSINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM OAA OXALOACETATE ION HETNAM K POTASSIUM ION HETNAM UNL UNKNOWN LIGAND HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM AT5 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4- HETNAM 2 AT5 HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM UMQ UNDECYL-MALTOSIDE HETNAM 3PE 1,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMINE HETSYN AT5 ATPENIN A5; AA5 HETSYN HEM HEME HETSYN UMQ UNDECYL-BETA-D-MALTOPYRANOSIDE HETSYN 3PE 3-SN-PHOSPHATIDYLETHANOLAMINE; 1,2-DIACYL-SN-GLYCERO-3- HETSYN 2 3PE PHOSPHOETHANOLAMINE FORMUL 3 MLZ C7 H16 N2 O2 FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 OAA C4 H3 O5 1- FORMUL 7 K K 1+ FORMUL 9 PEG C4 H10 O3 FORMUL 33 FES FE2 S2 FORMUL 34 SF4 FE4 S4 FORMUL 35 F3S FE3 S4 FORMUL 55 AT5 C15 H21 CL2 N O5 FORMUL 56 HEM C34 H32 FE N4 O4 FORMUL 57 UMQ C23 H44 O11 FORMUL 67 3PE C41 H82 N O8 P FORMUL 75 HOH *200(H2 O) HELIX 1 AA1 GLY A 27 ALA A 40 1 14 HELIX 2 AA2 PHE A 51 ALA A 60 5 10 HELIX 3 AA3 ASN A 75 SER A 87 1 13 HELIX 4 AA4 ASP A 92 GLY A 114 1 23 HELIX 5 AA5 ARG A 152 LEU A 166 1 15 HELIX 6 AA6 TYR A 216 TYR A 220 5 5 HELIX 7 AA7 GLY A 231 ALA A 240 1 10 HELIX 8 AA8 GLU A 266 GLY A 272 1 7 HELIX 9 AA9 PHE A 283 ALA A 288 1 6 HELIX 10 AB1 ALA A 291 ALA A 295 5 5 HELIX 11 AB2 SER A 296 GLU A 310 1 15 HELIX 12 AB3 PRO A 329 LEU A 337 1 9 HELIX 13 AB4 LEU A 337 PHE A 347 1 11 HELIX 14 AB5 ASN A 412 CYS A 432 1 21 HELIX 15 AB6 GLY A 446 PHE A 458 1 13 HELIX 16 AB7 THR A 465 ALA A 480 1 16 HELIX 17 AB8 THR A 485 ASP A 502 1 18 HELIX 18 AB9 ASN A 516 ARG A 542 1 27 HELIX 19 AC1 PRO A 574 HIS A 578 5 5 HELIX 20 AC2 ASN B 38 CYS B 40 5 3 HELIX 21 AC3 MET B 43 LEU B 55 1 13 HELIX 22 AC4 LEU B 115 ILE B 125 1 11 HELIX 23 AC5 ASP B 133 GLN B 137 5 5 HELIX 24 AC6 SER B 145 LYS B 151 1 7 HELIX 25 AC7 CYS B 164 SER B 167 5 4 HELIX 26 AC8 CYS B 168 ASN B 174 1 7 HELIX 27 AC9 GLY B 180 ILE B 192 1 13 HELIX 28 AD1 TYR B 198 GLN B 205 1 8 HELIX 29 AD2 MET B 219 CYS B 225 1 7 HELIX 30 AD3 ASN B 230 ALA B 243 1 14 HELIX 31 AD4 THR C 4 THR C 17 1 14 HELIX 32 AD5 SER C 33 LEU C 63 1 31 HELIX 33 AD6 GLN C 66 LEU C 77 1 12 HELIX 34 AD7 SER C 80 MET C 110 1 31 HELIX 35 AD8 LYS C 115 ALA C 138 1 24 HELIX 36 AD9 LYS D 4 TYR D 30 1 27 HELIX 37 AE1 GLY D 32 VAL D 59 1 28 HELIX 38 AE2 GLY D 61 ASP D 90 1 30 HELIX 39 AE3 GLY D 92 SER D 102 1 11 SHEET 1 AA1 6 SER A 171 VAL A 174 0 SHEET 2 AA1 6 THR A 44 THR A 48 1 N CYS A 46 O PHE A 173 SHEET 3 AA1 6 VAL A 14 VAL A 24 1 N VAL A 23 O VAL A 47 SHEET 4 AA1 6 THR A 200 ILE A 211 1 O ARG A 203 N HIS A 17 SHEET 5 AA1 6 GLU A 187 CYS A 195 -1 N CYS A 195 O THR A 200 SHEET 6 AA1 6 TYR A 176 GLU A 184 -1 N LEU A 182 O ARG A 189 SHEET 1 AA2 6 SER A 171 VAL A 174 0 SHEET 2 AA2 6 THR A 44 THR A 48 1 N CYS A 46 O PHE A 173 SHEET 3 AA2 6 VAL A 14 VAL A 24 1 N VAL A 23 O VAL A 47 SHEET 4 AA2 6 THR A 200 ILE A 211 1 O ARG A 203 N HIS A 17 SHEET 5 AA2 6 GLU A 385 ALA A 394 1 O TYR A 393 N THR A 209 SHEET 6 AA2 6 GLN A 377 VAL A 382 -1 N THR A 380 O LYS A 387 SHEET 1 AA3 3 ILE A 64 ASN A 65 0 SHEET 2 AA3 3 CYS A 146 CYS A 147 -1 O CYS A 147 N ILE A 64 SHEET 3 AA3 3 GLN A 127 ARG A 128 -1 N ARG A 128 O CYS A 146 SHEET 1 AA4 3 CYS A 244 GLN A 245 0 SHEET 2 AA4 3 LYS A 581 ASP A 588 -1 O SER A 585 N CYS A 244 SHEET 3 AA4 3 LYS A 593 PRO A 600 -1 O LYS A 597 N LEU A 584 SHEET 1 AA5 4 VAL A 250 ILE A 257 0 SHEET 2 AA5 4 ILE A 357 ASN A 366 -1 O TYR A 365 N GLN A 251 SHEET 3 AA5 4 VAL A 321 GLN A 324 -1 N LEU A 323 O ILE A 357 SHEET 4 AA5 4 ILE A 274 ILE A 276 -1 N ILE A 274 O GLN A 324 SHEET 1 AA6 2 ILE A 370 PRO A 371 0 SHEET 2 AA6 2 ALA A 399 SER A 400 1 O SER A 400 N ILE A 370 SHEET 1 AA7 2 ILE A 463 ARG A 464 0 SHEET 2 AA7 2 LEU A 506 LYS A 507 1 O LYS A 507 N ILE A 463 SHEET 1 AA8 2 PHE A 483 ARG A 484 0 SHEET 2 AA8 2 ALA A 550 ARG A 551 1 O ALA A 550 N ARG A 484 SHEET 1 AA9 5 ARG B 29 ASP B 36 0 SHEET 2 AA9 5 ILE B 11 ARG B 18 -1 N ARG B 18 O ARG B 29 SHEET 3 AA9 5 THR B 97 TYR B 100 1 O ILE B 99 N SER B 15 SHEET 4 AA9 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 AA9 5 GLY B 80 LEU B 83 -1 O THR B 82 N MET B 75 SHEET 1 AB1 2 VAL B 107 LYS B 109 0 SHEET 2 AB1 2 VAL B 112 PRO B 113 -1 O VAL B 112 N LYS B 109 LINK NE2 HIS A 56 C8M FAD A1001 1555 1555 1.50 LINK C GLU C 14 N MLZ C 15 1555 1555 1.33 LINK C MLZ C 15 N ASN C 16 1555 1555 1.33 LINK OE1 GLU A 121 MN UNL A1004 1555 1455 2.61 LINK O ASN A 366 K K A1003 1555 1555 2.77 LINK O MET A 367 K K A1003 1555 1555 3.00 LINK O GLY A 368 K K A1003 1555 1555 3.07 LINK O GLU A 397 K K A1003 1555 1555 2.73 LINK O ALA A 399 K K A1003 1555 1555 2.81 LINK NE2 HIS A 505 MN UNL A1004 1555 1555 2.08 LINK SG CYS B 65 FE2 FES B1001 1555 1555 2.09 LINK SG CYS B 70 FE2 FES B1001 1555 1555 2.23 LINK SG CYS B 73 FE1 FES B1001 1555 1555 2.16 LINK SG CYS B 85 FE1 FES B1001 1555 1555 2.25 LINK SG CYS B 158 FE3 SF4 B1002 1555 1555 2.24 LINK SG CYS B 161 FE4 SF4 B1002 1555 1555 2.26 LINK SG CYS B 164 FE1 SF4 B1002 1555 1555 2.23 LINK SG CYS B 168 FE1 F3S B1003 1555 1555 2.06 LINK SG CYS B 215 FE4 F3S B1003 1555 1555 2.24 LINK SG CYS B 221 FE3 F3S B1003 1555 1555 2.33 LINK SG CYS B 225 FE2 SF4 B1002 1555 1555 2.32 LINK NE2 HIS C 98 FE HEM C 201 1555 1555 1.91 LINK FE HEM C 201 NE2 HIS D 46 1555 1555 2.16 CISPEP 1 ALA A 401 SER A 402 0 4.07 SITE 1 AC1 38 GLY A 25 ALA A 26 GLY A 27 GLY A 28 SITE 2 AC1 38 ALA A 29 THR A 48 LYS A 49 LEU A 50 SITE 3 AC1 38 SER A 55 HIS A 56 THR A 57 ALA A 59 SITE 4 AC1 38 ALA A 60 GLN A 61 GLY A 62 GLY A 63 SITE 5 AC1 38 TYR A 176 PHE A 177 ALA A 178 ALA A 212 SITE 6 AC1 38 THR A 213 GLY A 214 ASP A 232 LEU A 263 SITE 7 AC1 38 HIS A 364 TYR A 365 GLY A 396 GLU A 397 SITE 8 AC1 38 ARG A 408 ALA A 411 ASN A 412 SER A 413 SITE 9 AC1 38 LEU A 414 LEU A 417 OAA A1002 HOH A1113 SITE 10 AC1 38 HOH A1123 HOH A1166 SITE 1 AC2 12 GLY A 62 PHE A 130 HIS A 253 LEU A 263 SITE 2 AC2 12 THR A 265 GLU A 266 ARG A 297 HIS A 364 SITE 3 AC2 12 ARG A 408 GLY A 410 ALA A 411 FAD A1001 SITE 1 AC3 6 TYR A 365 ASN A 366 MET A 367 GLY A 368 SITE 2 AC3 6 GLU A 397 ALA A 399 SITE 1 AC4 5 HIS A 227 ARG A 469 GLN A 473 GLU A 521 SITE 2 AC4 5 ARG B 63 SITE 1 AC5 8 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 AC5 8 CYS B 70 GLY B 71 CYS B 73 CYS B 85 SITE 1 AC6 8 CYS B 158 ILE B 159 LEU B 160 CYS B 161 SITE 2 AC6 8 ALA B 162 CYS B 164 MET B 185 CYS B 225 SITE 1 AC7 10 CYS B 168 TYR B 178 CYS B 215 HIS B 216 SITE 2 AC7 10 THR B 217 ILE B 218 MET B 219 ASN B 220 SITE 3 AC7 10 CYS B 221 ILE B 235 SITE 1 AC8 14 PRO B 169 SER B 170 TRP B 172 TRP B 173 SITE 2 AC8 14 HIS B 216 ILE B 218 ILE C 27 TRP C 32 SITE 3 AC8 14 MET C 36 SER C 39 ILE C 40 ARG C 43 SITE 4 AC8 14 ASP D 57 TYR D 58 SITE 1 AC9 17 HIS B 216 HOH B1143 HIS C 42 ARG C 43 SITE 2 AC9 17 GLY C 46 LEU C 49 SER C 50 HIS C 98 SITE 3 AC9 17 THR C 99 GLY C 102 HIS C 105 ARG D 14 SITE 4 AC9 17 LEU D 20 LEU D 43 HIS D 46 GLY D 50 SITE 5 AC9 17 VAL D 54 SITE 1 AD1 9 LYS C 31 TRP C 32 SER C 33 LEU C 34 SITE 2 AD1 9 THR C 41 PHE C 93 GLU C 120 TYR D 88 SITE 3 AD1 9 TYR D 89 SITE 1 AD2 8 GLY C 52 LEU C 91 LEU C 95 MET C 140 SITE 2 AD2 8 ALA D 27 TYR D 28 VAL D 97 TRP D 101 CRYST1 69.992 83.817 290.344 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003444 0.00000