HEADER HYDROLASE 09-NOV-18 6N1N TITLE CRYSTAL STRUCTURE OF CLASS D BETA-LACTAMASE FROM SEBALDELLA TERMITIDIS TITLE 2 ATCC 33386 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEBALDELLA TERMITIDIS; SOURCE 3 ORGANISM_TAXID: 526218; SOURCE 4 STRAIN: ATCC 33386 / NCTC 11300; SOURCE 5 GENE: STERM_0301; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS ANTIBIOTIC RESISTANCE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,C.TESAR,M.ENDRES,A.JOACHIMIAK,K.J.SATCHELL,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-DEC-19 6N1N 1 REMARK REVDAT 1 19-DEC-18 6N1N 0 JRNL AUTH K.MICHALSKA,C.TESAR,M.ENDRES,A.JOACHIMIAK,K.J.SATCHELL, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF CLASS D BETA-LACTAMASE FROM SEBALDELLA JRNL TITL 2 TERMITIDIS ATCC 33386 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC1_3161: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 32929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9205 - 3.6623 1.00 2854 157 0.1471 0.1878 REMARK 3 2 3.6623 - 2.9079 1.00 2710 147 0.1425 0.2117 REMARK 3 3 2.9079 - 2.5406 1.00 2712 138 0.1539 0.1573 REMARK 3 4 2.5406 - 2.3084 1.00 2688 147 0.1406 0.1797 REMARK 3 5 2.3084 - 2.1430 0.99 2593 166 0.1461 0.1975 REMARK 3 6 2.1430 - 2.0167 0.98 2601 135 0.1446 0.1745 REMARK 3 7 2.0167 - 1.9158 0.97 2597 112 0.1629 0.2051 REMARK 3 8 1.9158 - 1.8324 0.96 2527 141 0.1828 0.2156 REMARK 3 9 1.8324 - 1.7618 0.96 2551 118 0.1998 0.2716 REMARK 3 10 1.7618 - 1.7011 0.95 2522 143 0.2176 0.2317 REMARK 3 11 1.7011 - 1.6479 0.95 2484 133 0.2328 0.3020 REMARK 3 12 1.6479 - 1.6008 0.93 2445 108 0.2586 0.2987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2208 REMARK 3 ANGLE : 1.061 2975 REMARK 3 CHIRALITY : 0.061 304 REMARK 3 PLANARITY : 0.006 377 REMARK 3 DIHEDRAL : 13.969 1330 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9510 32.5349 34.7102 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.0735 REMARK 3 T33: 0.1063 T12: 0.0177 REMARK 3 T13: 0.0104 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.1197 L22: 0.1080 REMARK 3 L33: 0.1215 L12: -0.0479 REMARK 3 L13: 0.0120 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0783 S13: 0.0913 REMARK 3 S21: -0.0231 S22: -0.0203 S23: 0.0137 REMARK 3 S31: -0.1077 S32: -0.0411 S33: -0.0087 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9696 8.4749 17.0219 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.0584 REMARK 3 T33: 0.0688 T12: -0.0025 REMARK 3 T13: -0.0055 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.3139 REMARK 3 L33: 0.5444 L12: -0.0670 REMARK 3 L13: 0.0468 L23: -0.1120 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.0064 S13: -0.0282 REMARK 3 S21: -0.0969 S22: -0.0010 S23: 0.0524 REMARK 3 S31: 0.0628 S32: 0.0541 S33: 0.0473 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0970 5.8721 19.9824 REMARK 3 T TENSOR REMARK 3 T11: 0.1069 T22: 0.1116 REMARK 3 T33: 0.1325 T12: -0.0369 REMARK 3 T13: -0.0074 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1105 L22: 0.0587 REMARK 3 L33: 0.0056 L12: -0.0367 REMARK 3 L13: -0.0083 L23: 0.0251 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.1201 S13: -0.0093 REMARK 3 S21: -0.0369 S22: -0.0744 S23: 0.0934 REMARK 3 S31: -0.0149 S32: -0.0375 S33: -0.0015 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5046 16.5152 23.8420 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.0850 REMARK 3 T33: 0.0750 T12: -0.0179 REMARK 3 T13: -0.0065 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.1050 L22: 0.0233 REMARK 3 L33: 0.0344 L12: -0.0191 REMARK 3 L13: -0.0228 L23: 0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.0018 S13: -0.0057 REMARK 3 S21: -0.0084 S22: 0.0067 S23: 0.0375 REMARK 3 S31: 0.0233 S32: -0.0928 S33: -0.0060 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1202 5.3220 34.8412 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.0991 REMARK 3 T33: 0.0973 T12: -0.0289 REMARK 3 T13: -0.0052 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.0168 L22: 0.0970 REMARK 3 L33: 0.0768 L12: 0.0104 REMARK 3 L13: 0.0102 L23: 0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: -0.0924 S13: -0.0304 REMARK 3 S21: 0.0844 S22: 0.0012 S23: -0.0065 REMARK 3 S31: 0.1591 S32: -0.0290 S33: 0.0302 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8468 21.4576 25.7248 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.1110 REMARK 3 T33: 0.0799 T12: -0.0041 REMARK 3 T13: -0.0041 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0662 L22: 0.0586 REMARK 3 L33: 0.0281 L12: 0.0388 REMARK 3 L13: 0.0412 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0216 S13: -0.0450 REMARK 3 S21: -0.0279 S22: -0.0039 S23: 0.0360 REMARK 3 S31: -0.0111 S32: 0.0651 S33: 0.0078 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6166 26.5707 30.9952 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0978 REMARK 3 T33: 0.0897 T12: 0.0058 REMARK 3 T13: -0.0162 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.0513 L22: 0.0337 REMARK 3 L33: 0.0299 L12: -0.0106 REMARK 3 L13: -0.0299 L23: 0.0285 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.0637 S13: 0.1015 REMARK 3 S21: 0.0377 S22: -0.0226 S23: 0.0221 REMARK 3 S31: -0.1129 S32: -0.0635 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5321 31.2062 24.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1173 REMARK 3 T33: 0.1060 T12: -0.0273 REMARK 3 T13: -0.0104 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.0334 L22: 0.0740 REMARK 3 L33: 0.0396 L12: -0.0084 REMARK 3 L13: -0.0367 L23: 0.0042 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.1025 S13: -0.0213 REMARK 3 S21: 0.0108 S22: 0.0033 S23: -0.0540 REMARK 3 S31: -0.1330 S32: 0.1778 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0. 2 M LI2SO4, ).1 M TRIS/HCL, PH 8.5, REMARK 280 25% PEG3350, CRYO 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.75500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.77300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.77300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 658 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -163.28 -110.04 REMARK 500 ALA A 64 -139.89 48.00 REMARK 500 ASP A 83 -169.39 -168.23 REMARK 500 ASN A 101 57.30 -94.28 REMARK 500 SER A 150 24.92 -157.34 REMARK 500 ARG A 155 3.14 80.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97238 RELATED DB: TARGETTRACK DBREF 6N1N A 18 264 UNP D1ALR7 D1ALR7_SEBTE 18 264 SEQADV 6N1N SER A 15 UNP D1ALR7 EXPRESSION TAG SEQADV 6N1N ASN A 16 UNP D1ALR7 EXPRESSION TAG SEQADV 6N1N ALA A 17 UNP D1ALR7 EXPRESSION TAG SEQRES 1 A 250 SER ASN ALA MSE VAL SER ASN SER ASN VAL ASN LEU GLN SEQRES 2 A 250 LYS ILE PHE ASP GLU ASN LYS ILE THR GLY SER VAL THR SEQRES 3 A 250 ILE TYR ASP TYR LYS ASN LYS ILE TRP ILE TYR SER ASN SEQRES 4 A 250 GLU GLU ASP SER LYS ILE ARG ARG LEU PRO ALA SER THR SEQRES 5 A 250 PHE KCX ILE PRO ASN SER LEU ILE PHE LEU GLU GLU GLU SEQRES 6 A 250 VAL VAL LYS ASP GLU ASN GLU ALA MSE GLU TRP ASP GLY SEQRES 7 A 250 ILE LYS ARG TYR ILE GLU ASN TRP ASN LYS ASP LEU ASN SEQRES 8 A 250 LEU ARG GLU ALA TYR GLU TYR SER ALA LEU TRP PHE TYR SEQRES 9 A 250 MSE LYS GLY ALA GLY LYS ILE LYS SER GLU LYS TYR LYS SEQRES 10 A 250 GLU TYR LEU LYS GLU PHE ASN TYR GLY ASN GLN ILE VAL SEQRES 11 A 250 SER GLU LYS LYS ASN SER PHE TRP ILE ASP ARG SER LEU SEQRES 12 A 250 LYS ILE SER PRO GLU GLU GLN ILE ASP PHE LEU ILE ASN SEQRES 13 A 250 LEU TYR GLU GLU LYS PHE MSE LEU SER GLU LYS THR TYR SEQRES 14 A 250 LYS ILE VAL LYS ASP ILE MSE ILE ASN GLU LYS THR PRO SEQRES 15 A 250 GLU TYR THR LEU ARG GLY LYS THR GLY TRP GLY ARG GLU SEQRES 16 A 250 GLY ALA GLU ASN ILE ILE TRP TYR VAL GLY TYR ILE GLU SEQRES 17 A 250 ALA LYS GLU ASN VAL TYR PHE PHE ALA VAL ARG ILE ILE SEQRES 18 A 250 ASN ALA SER GLU GLU ARG ASN SER TYR LEU LEU ASP PHE SEQRES 19 A 250 ARG LYS GLN LEU THR MSE MSE ALA PHE ARG GLU LEU GLY SEQRES 20 A 250 ILE ILE ASN MODRES 6N1N MSE A 18 MET MODIFIED RESIDUE MODRES 6N1N KCX A 68 LYS MODIFIED RESIDUE MODRES 6N1N MSE A 88 MET MODIFIED RESIDUE MODRES 6N1N MSE A 119 MET MODIFIED RESIDUE MODRES 6N1N MSE A 177 MET MODIFIED RESIDUE MODRES 6N1N MSE A 190 MET MODIFIED RESIDUE MODRES 6N1N MSE A 254 MET MODIFIED RESIDUE MODRES 6N1N MSE A 255 MET MODIFIED RESIDUE HET MSE A 18 17 HET KCX A 68 23 HET MSE A 88 17 HET MSE A 119 34 HET MSE A 177 34 HET MSE A 190 17 HET MSE A 254 17 HET MSE A 255 17 HET SO4 A 301 5 HET SO4 A 302 5 HET GOL A 303 13 HETNAM MSE SELENOMETHIONINE HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *274(H2 O) HELIX 1 AA1 ASN A 25 ASN A 33 1 9 HELIX 2 AA2 GLU A 55 ILE A 59 5 5 HELIX 3 AA3 PRO A 63 THR A 66 5 4 HELIX 4 AA4 PHE A 67 GLU A 78 1 12 HELIX 5 AA5 ILE A 97 ASN A 101 5 5 HELIX 6 AA6 ASN A 105 SER A 113 1 9 HELIX 7 AA7 ALA A 114 GLY A 123 1 10 HELIX 8 AA8 LYS A 126 PHE A 137 1 12 HELIX 9 AA9 SER A 160 GLU A 173 1 14 HELIX 10 AB1 SER A 179 MSE A 190 1 12 HELIX 11 AB2 ARG A 241 LEU A 260 1 20 SHEET 1 AA1 7 MSE A 18 VAL A 19 0 SHEET 2 AA1 7 ILE A 48 TYR A 51 1 O TRP A 49 N MSE A 18 SHEET 3 AA1 7 THR A 36 ASP A 43 -1 N ILE A 41 O ILE A 50 SHEET 4 AA1 7 ASN A 226 ASN A 236 -1 O ARG A 233 N SER A 38 SHEET 5 AA1 7 GLU A 212 ALA A 223 -1 N ILE A 215 O ILE A 234 SHEET 6 AA1 7 TYR A 198 GLU A 209 -1 N GLY A 207 O ILE A 214 SHEET 7 AA1 7 ILE A 191 LYS A 194 -1 N GLU A 193 O LEU A 200 LINK C ALA A 17 N MSE A 18 1555 1555 1.32 LINK C MSE A 18 N VAL A 19 1555 1555 1.33 LINK C PHE A 67 N KCX A 68 1555 1555 1.32 LINK C KCX A 68 N ILE A 69 1555 1555 1.34 LINK C ALA A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N GLU A 89 1555 1555 1.34 LINK C TYR A 118 N AMSE A 119 1555 1555 1.33 LINK C TYR A 118 N BMSE A 119 1555 1555 1.33 LINK C AMSE A 119 N LYS A 120 1555 1555 1.34 LINK C BMSE A 119 N LYS A 120 1555 1555 1.34 LINK C PHE A 176 N AMSE A 177 1555 1555 1.33 LINK C PHE A 176 N BMSE A 177 1555 1555 1.33 LINK C AMSE A 177 N LEU A 178 1555 1555 1.33 LINK C BMSE A 177 N LEU A 178 1555 1555 1.33 LINK C ILE A 189 N MSE A 190 1555 1555 1.34 LINK C MSE A 190 N ILE A 191 1555 1555 1.33 LINK C THR A 253 N MSE A 254 1555 1555 1.34 LINK C MSE A 254 N MSE A 255 1555 1555 1.34 LINK C MSE A 255 N ALA A 256 1555 1555 1.34 SITE 1 AC1 5 LYS A 158 LYS A 250 HOH A 406 HOH A 518 SITE 2 AC1 5 HOH A 565 SITE 1 AC2 8 SER A 65 SER A 113 LYS A 203 THR A 204 SITE 2 AC2 8 GLY A 205 TRP A 206 ARG A 249 HOH A 461 SITE 1 AC3 5 LYS A 126 SER A 127 LYS A 148 HOH A 419 SITE 2 AC3 5 HOH A 478 CRYST1 63.510 97.546 40.328 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015746 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024797 0.00000