HEADER LYASE 13-NOV-18 6N2H TITLE STRUCTURE OF D-ORNITHINE/D-LYSINE DECARBOXYLASE FROM SALMONELLA TITLE 2 TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ORNITHINE/D-LYSINE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 GENE: DD95_01965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS PYRIDOXAL-5'-PHOSPHATE, FOLD III, DECARBOXYLASE, D-AMINO ACID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.PHILLIPS,T.R.HOOVER REVDAT 3 15-NOV-23 6N2H 1 REMARK REVDAT 2 11-OCT-23 6N2H 1 REMARK REVDAT 1 23-OCT-19 6N2H 0 JRNL AUTH R.S.PHILLIPS,P.POTEH,D.KRAJCOVIC,K.A.MILLER,T.R.HOOVER JRNL TITL CRYSTAL STRUCTURE OF D-ORNITHINE/D-LYSINE DECARBOXYLASE, A JRNL TITL 2 STEREOINVERTING DECARBOXYLASE: IMPLICATIONS FOR SUBSTRATE JRNL TITL 3 SPECIFICITY AND STEREOSPECIFICITY OF FOLD III JRNL TITL 4 DECARBOXYLASES. JRNL REF BIOCHEMISTRY V. 58 1038 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 30699288 JRNL DOI 10.1021/ACS.BIOCHEM.8B01319 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9014 - 4.1444 1.00 3583 154 0.1516 0.1420 REMARK 3 2 4.1444 - 3.2898 1.00 3512 139 0.1286 0.1823 REMARK 3 3 3.2898 - 2.8740 1.00 3484 141 0.1446 0.1779 REMARK 3 4 2.8740 - 2.6113 1.00 3481 151 0.1522 0.2023 REMARK 3 5 2.6113 - 2.4241 1.00 3473 142 0.1468 0.1880 REMARK 3 6 2.4241 - 2.2812 1.00 3480 143 0.1499 0.1974 REMARK 3 7 2.2812 - 2.1670 1.00 3452 142 0.1518 0.2114 REMARK 3 8 2.1670 - 2.0726 1.00 3454 144 0.1797 0.2051 REMARK 3 9 2.0726 - 1.9928 1.00 3463 139 0.1933 0.2217 REMARK 3 10 1.9928 - 1.9241 1.00 3441 150 0.2096 0.2527 REMARK 3 11 1.9241 - 1.8639 1.00 3459 136 0.2442 0.2740 REMARK 3 12 1.8639 - 1.8106 1.00 3419 144 0.2968 0.3203 REMARK 3 13 1.8106 - 1.7630 1.00 3497 139 0.3368 0.3495 REMARK 3 14 1.7630 - 1.7200 1.00 3423 138 0.3686 0.4327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0634 6.7515 55.1967 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.3083 REMARK 3 T33: 0.1589 T12: 0.0147 REMARK 3 T13: 0.0245 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.1072 L22: 3.5751 REMARK 3 L33: 2.1024 L12: -0.0993 REMARK 3 L13: 0.3444 L23: 0.4174 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.2971 S13: 0.0700 REMARK 3 S21: 0.2505 S22: -0.0922 S23: 0.1064 REMARK 3 S31: -0.0931 S32: -0.3185 S33: 0.0650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0340 -3.5106 25.8561 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.2346 REMARK 3 T33: 0.2504 T12: -0.0152 REMARK 3 T13: -0.0029 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.3580 L22: 0.3911 REMARK 3 L33: 1.3654 L12: 0.0022 REMARK 3 L13: 0.2612 L23: -0.1087 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0090 S13: -0.0732 REMARK 3 S21: -0.0331 S22: 0.0143 S23: 0.0349 REMARK 3 S31: 0.0840 S32: -0.1165 S33: -0.0315 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2535 5.4194 7.2121 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.2884 REMARK 3 T33: 0.1893 T12: 0.0369 REMARK 3 T13: 0.0447 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.8370 L22: 5.6363 REMARK 3 L33: 2.7249 L12: 0.4508 REMARK 3 L13: 0.8812 L23: 0.5857 REMARK 3 S TENSOR REMARK 3 S11: 0.1362 S12: 0.2017 S13: 0.2284 REMARK 3 S21: -0.0578 S22: -0.2084 S23: -0.0722 REMARK 3 S31: -0.1599 S32: 0.0545 S33: 0.0522 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6906 10.9638 13.1601 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.2732 REMARK 3 T33: 0.2370 T12: 0.0377 REMARK 3 T13: 0.0219 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.0455 L22: 0.9903 REMARK 3 L33: 3.1065 L12: -0.4194 REMARK 3 L13: 0.7554 L23: 0.2580 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0370 S13: 0.1172 REMARK 3 S21: -0.0651 S22: -0.0256 S23: 0.0340 REMARK 3 S31: -0.4472 S32: -0.2243 S33: 0.0637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4960 14.8139 31.1895 REMARK 3 T TENSOR REMARK 3 T11: 0.3246 T22: 0.2481 REMARK 3 T33: 0.2877 T12: 0.0531 REMARK 3 T13: -0.0058 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.3654 L22: 0.9025 REMARK 3 L33: 5.4682 L12: 0.0699 REMARK 3 L13: 1.2353 L23: 1.0239 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.0821 S13: 0.1627 REMARK 3 S21: -0.0633 S22: -0.0015 S23: 0.0147 REMARK 3 S31: -0.7117 S32: -0.1726 S33: 0.3145 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1766 8.7302 33.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.1997 REMARK 3 T33: 0.2249 T12: 0.0108 REMARK 3 T13: 0.0348 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.1846 L22: 0.2276 REMARK 3 L33: 4.0161 L12: -0.3250 REMARK 3 L13: 2.4468 L23: -0.2724 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.0133 S13: 0.0650 REMARK 3 S21: 0.0014 S22: 0.0231 S23: 0.0121 REMARK 3 S31: -0.1787 S32: -0.1133 S33: 0.0594 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1301 12.7946 52.3731 REMARK 3 T TENSOR REMARK 3 T11: 0.2565 T22: 0.1739 REMARK 3 T33: 0.2204 T12: -0.0060 REMARK 3 T13: -0.0082 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.9717 L22: 1.2765 REMARK 3 L33: 1.8871 L12: 0.5140 REMARK 3 L13: 0.6475 L23: 0.1702 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.1013 S13: 0.2530 REMARK 3 S21: 0.0753 S22: -0.0152 S23: -0.1166 REMARK 3 S31: -0.3662 S32: 0.1179 S33: 0.0304 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 466 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1977 0.5242 45.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.2005 REMARK 3 T33: 0.2017 T12: -0.0123 REMARK 3 T13: 0.0066 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.8603 L22: 0.8818 REMARK 3 L33: 1.0778 L12: -0.2087 REMARK 3 L13: -0.0189 L23: 0.3812 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.0867 S13: 0.0027 REMARK 3 S21: 0.0143 S22: 0.0051 S23: -0.0331 REMARK 3 S31: -0.0301 S32: -0.0100 S33: -0.0183 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50643 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 46.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.16280 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 2.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M POTASSIUM PHOSPHATE, PH 7, 28 REMARK 280 -30% DIOXANE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.87000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.87000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.84041 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.69151 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 176 REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 HIS A 179 REMARK 465 ALA A 180 REMARK 465 GLU A 181 REMARK 465 LEU A 182 REMARK 465 ALA A 467 REMARK 465 ALA A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 GLU A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 140 NH1 ARG A 213 2.09 REMARK 500 O HOH A 638 O HOH A 905 2.10 REMARK 500 NH2 ARG A 213 O HOH A 601 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 884 O HOH A 1008 2656 2.16 REMARK 500 O HOH A 799 O HOH A 947 2646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 82 121.27 -170.22 REMARK 500 CYS A 97 -169.72 -110.10 REMARK 500 TRP A 298 -58.46 -120.01 REMARK 500 ASP A 388 119.00 -160.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1047 DISTANCE = 6.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 508 DBREF1 6N2H A 1 465 UNP A0A0D6FAR3_SALTM DBREF2 6N2H A A0A0D6FAR3 1 465 SEQADV 6N2H LEU A 466 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H ALA A 467 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H ALA A 468 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H ALA A 469 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H LEU A 470 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H GLU A 471 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H HIS A 472 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H HIS A 473 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H HIS A 474 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H HIS A 475 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H HIS A 476 UNP A0A0D6FAR EXPRESSION TAG SEQADV 6N2H HIS A 477 UNP A0A0D6FAR EXPRESSION TAG SEQRES 1 A 477 MET THR ASP SER ILE MET GLN ASN TYR ASN GLN LEU ARG SEQRES 2 A 477 GLU GLN VAL ILE ASN GLY ASP ARG ARG PHE GLN HIS LYS SEQRES 3 A 477 ASP GLY HIS LEU CYS PHE GLU GLY VAL ASP LEU ASP ALA SEQRES 4 A 477 LEU ALA ARG GLN TYR PRO THR PRO PHE TYR VAL PHE SER SEQRES 5 A 477 GLU PRO GLU ILE ILE ARG ASN ILE HIS GLU ILE GLN GLN SEQRES 6 A 477 ALA PHE ALA ALA HIS LYS ASN THR LYS THR PHE PHE ALA SEQRES 7 A 477 SER LLP THR CYS SER VAL MET GLY VAL LEU LYS ALA ILE SEQRES 8 A 477 ARG ASP ALA GLY ILE CYS ALA GLU ALA ASN SER GLN TYR SEQRES 9 A 477 GLU VAL ARG LYS CYS LEU GLU ILE GLY PHE ARG GLY ASP SEQRES 10 A 477 GLN ILE VAL PHE ASN GLY VAL VAL LYS LYS PRO ALA ASP SEQRES 11 A 477 LEU GLU TYR ALA ILE ALA ASN ASP LEU TYR LEU ILE ASN SEQRES 12 A 477 VAL ASP SER LEU TYR GLU LEU GLU HIS ILE ASP ALA ILE SEQRES 13 A 477 SER ARG LYS LEU LYS LYS VAL ALA ASN VAL CYS VAL ARG SEQRES 14 A 477 VAL GLU PRO ASN VAL PRO SER ALA THR HIS ALA GLU LEU SEQRES 15 A 477 VAL THR ALA PHE HIS ALA LYS SER GLY LEU ASP LEU GLU SEQRES 16 A 477 GLN ALA GLU GLU THR CYS ARG ARG ILE LEU ALA MET PRO SEQRES 17 A 477 TYR VAL HIS LEU ARG GLY LEU HIS MET HIS VAL GLY ASP SEQRES 18 A 477 GLN VAL PRO GLU SER GLU PRO PHE ALA LYS ALA THR LYS SEQRES 19 A 477 VAL LEU VAL ASP GLU SER ARG ARG LEU GLU GLU VAL LEU SEQRES 20 A 477 GLY ILE LYS PHE ASP LEU ILE ASN VAL GLY GLY GLY ILE SEQRES 21 A 477 PRO VAL PRO TYR LYS TYR ASP ASP GLU ASN GLY ASP PRO SEQRES 22 A 477 LEU LYS ASP ASN MET TYR ALA GLY ILE THR ALA GLN ASP SEQRES 23 A 477 PHE ALA ASP ALA VAL ILE ARG GLU VAL HIS LYS TRP ARG SEQRES 24 A 477 THR ASP VAL GLU ILE CYS ILE GLU PRO GLY ARG LYS VAL SEQRES 25 A 477 THR GLY SER ALA ALA VAL LEU LEU THR GLU VAL SER CYS SEQRES 26 A 477 GLU LYS ARG LYS THR ASN TYR ASP LEU ASN GLY ASN VAL SEQRES 27 A 477 GLU CYS HIS VAL GLU TRP LYS PHE VAL ASP ALA GLY TYR SEQRES 28 A 477 SER VAL LEU SER ASP SER GLN HIS PHE ASP TRP PHE PHE SEQRES 29 A 477 TYR VAL TYR ASN ALA SER ARG MET THR ALA ALA HIS ASP SEQRES 30 A 477 ALA TRP ILE LYS LEU ALA GLY PRO LEU CYS ASP GLY GLY SEQRES 31 A 477 ASP TYR PHE HIS MET GLY VAL LYS GLY GLU GLU PHE LEU SEQRES 32 A 477 LEU PRO LYS GLU THR HIS VAL GLY ASP ILE VAL ALA PHE SEQRES 33 A 477 LEU ASP ALA GLY ALA TYR THR ILE GLU SER GLN THR VAL SEQRES 34 A 477 TYR ASN ASN ARG PRO ARG THR GLY VAL VAL MET ILE ASP SEQRES 35 A 477 LYS ASN GLY ASP THR ARG LEU ILE ARG ARG GLU ASP SER SEQRES 36 A 477 TYR GLU ASP MET VAL LYS TYR ASP ILE TYR LEU ALA ALA SEQRES 37 A 477 ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 6N2H LLP A 80 LYS MODIFIED RESIDUE HET LLP A 80 40 HET DMS A 501 10 HET DMS A 502 10 HET DIO A 503 14 HET DIO A 504 14 HET DIO A 505 14 HET DIO A 506 14 HET DIO A 507 14 HET DIO A 508 14 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 DMS 2(C2 H6 O S) FORMUL 4 DIO 6(C4 H8 O2) FORMUL 10 HOH *447(H2 O) HELIX 1 AA1 MET A 1 GLY A 19 1 19 HELIX 2 AA2 LEU A 37 TYR A 44 1 8 HELIX 3 AA3 GLU A 53 PHE A 67 1 15 HELIX 4 AA4 LLP A 80 CYS A 82 5 3 HELIX 5 AA5 VAL A 84 ALA A 94 1 11 HELIX 6 AA6 SER A 102 GLY A 113 1 12 HELIX 7 AA7 ARG A 115 ASP A 117 5 3 HELIX 8 AA8 LYS A 127 ASN A 137 1 11 HELIX 9 AA9 SER A 146 LYS A 161 1 16 HELIX 10 AB1 THR A 184 ALA A 188 1 5 HELIX 11 AB2 ASP A 193 GLU A 195 5 3 HELIX 12 AB3 GLN A 196 ALA A 206 1 11 HELIX 13 AB4 SER A 226 GLY A 248 1 23 HELIX 14 AB5 ASP A 267 GLY A 271 5 5 HELIX 15 AB6 THR A 283 HIS A 296 1 14 HELIX 16 AB7 GLY A 309 GLY A 314 1 6 HELIX 17 AB8 SER A 355 PHE A 360 1 6 HELIX 18 AB9 SER A 370 MET A 372 5 3 HELIX 19 AC1 VAL A 429 ARG A 433 5 5 HELIX 20 AC2 SER A 455 LYS A 461 1 7 SHEET 1 AA1 3 PHE A 23 LYS A 26 0 SHEET 2 AA1 3 HIS A 29 PHE A 32 -1 O CYS A 31 N GLN A 24 SHEET 3 AA1 3 VAL A 35 ASP A 36 -1 O VAL A 35 N PHE A 32 SHEET 1 AA2 6 VAL A 366 ASN A 368 0 SHEET 2 AA2 6 ILE A 413 PHE A 416 -1 O ALA A 415 N TYR A 367 SHEET 3 AA2 6 ALA A 317 TYR A 332 -1 N THR A 321 O VAL A 414 SHEET 4 AA2 6 VAL A 338 VAL A 347 -1 O GLU A 339 N ASN A 331 SHEET 5 AA2 6 ALA A 378 ALA A 383 1 O ALA A 383 N LYS A 345 SHEET 6 AA2 6 PHE A 402 LEU A 404 -1 O PHE A 402 N ILE A 380 SHEET 1 AA3 6 VAL A 366 ASN A 368 0 SHEET 2 AA3 6 ILE A 413 PHE A 416 -1 O ALA A 415 N TYR A 367 SHEET 3 AA3 6 ALA A 317 TYR A 332 -1 N THR A 321 O VAL A 414 SHEET 4 AA3 6 PHE A 48 SER A 52 -1 N PHE A 48 O LEU A 320 SHEET 5 AA3 6 GLY A 437 ILE A 441 1 O ILE A 441 N PHE A 51 SHEET 6 AA3 6 THR A 447 ARG A 451 -1 O ILE A 450 N VAL A 438 SHEET 1 AA4 9 THR A 73 ALA A 78 0 SHEET 2 AA4 9 CYS A 97 ALA A 100 1 O GLU A 99 N PHE A 77 SHEET 3 AA4 9 ILE A 119 PHE A 121 1 O VAL A 120 N ALA A 100 SHEET 4 AA4 9 LEU A 141 VAL A 144 1 O LEU A 141 N PHE A 121 SHEET 5 AA4 9 ALA A 164 ARG A 169 1 O CYS A 167 N VAL A 144 SHEET 6 AA4 9 VAL A 210 HIS A 216 1 O HIS A 211 N ALA A 164 SHEET 7 AA4 9 LEU A 253 ASN A 255 1 O ASN A 255 N LEU A 215 SHEET 8 AA4 9 GLU A 303 ILE A 306 1 O CYS A 305 N ILE A 254 SHEET 9 AA4 9 THR A 73 ALA A 78 1 N PHE A 76 O ILE A 306 LINK C ASER A 79 N LLP A 80 1555 1555 1.33 LINK C BSER A 79 N LLP A 80 1555 1555 1.33 LINK C LLP A 80 N THR A 81 1555 1555 1.34 CISPEP 1 THR A 46 PRO A 47 0 -2.50 SITE 1 AC1 1 GLY A 34 SITE 1 AC2 6 GLU A 227 LYS A 231 GLU A 294 LYS A 297 SITE 2 AC2 6 HOH A 652 HOH A 997 SITE 1 AC3 3 ARG A 22 HOH A 857 HOH A 931 SITE 1 AC4 9 TYR A 9 LEU A 12 ASP A 267 TYR A 279 SITE 2 AC4 9 TYR A 365 HOH A 669 HOH A 692 HOH A 732 SITE 3 AC4 9 HOH A 816 SITE 1 AC5 4 TYR A 209 GLU A 343 LYS A 345 HOH A 756 SITE 1 AC6 3 ASP A 388 TYR A 422 TYR A 430 SITE 1 AC7 3 THR A 447 ARG A 448 HOH A 966 SITE 1 AC8 6 ALA A 41 TYR A 44 PRO A 45 THR A 46 SITE 2 AC8 6 GLU A 322 HOH A 862 CRYST1 133.740 52.280 86.700 90.00 127.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007477 0.000000 0.005758 0.00000 SCALE2 0.000000 0.019128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014558 0.00000