HEADER RNA 14-NOV-18 6N2V TITLE MANGANESE RIBOSWITCH FROM XANTHMONAS ORYZAE BOUND TO MN(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: X. ORYZAE MN RIBOSWITCH OPTIMIZED CONSTRUCT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: XANTHOMONAS ORYZAE; SOURCE 4 ORGANISM_TAXID: 347 KEYWDS RIBOSWITCH, RNA, MANGANESE EXPDTA X-RAY DIFFRACTION AUTHOR I.R.PRICE,A.KE REVDAT 3 11-OCT-23 6N2V 1 LINK REVDAT 2 01-JAN-20 6N2V 1 REMARK REVDAT 1 02-OCT-19 6N2V 0 JRNL AUTH K.C.SUDDALA,I.R.PRICE,S.S.DANDPAT,M.JANECEK,P.KUHROVA, JRNL AUTH 2 J.SPONER,P.BANAS,A.KE,N.G.WALTER JRNL TITL LOCAL-TO-GLOBAL SIGNAL TRANSDUCTION AT THE CORE OF A JRNL TITL 2 MN2+SENSING RIBOSWITCH. JRNL REF NAT COMMUN V. 10 4304 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31541094 JRNL DOI 10.1038/S41467-019-12230-5 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 28774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.270 REMARK 3 FREE R VALUE TEST SET COUNT : 2379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.6580 - 7.3247 0.99 1552 148 0.1599 0.1552 REMARK 3 2 7.3247 - 5.8151 1.00 1557 135 0.1696 0.2173 REMARK 3 3 5.8151 - 5.0804 1.00 1552 150 0.1711 0.1746 REMARK 3 4 5.0804 - 4.6161 0.99 1556 145 0.1772 0.1791 REMARK 3 5 4.6161 - 4.2853 1.00 1537 140 0.1862 0.2520 REMARK 3 6 4.2853 - 4.0327 1.00 1564 138 0.2000 0.2058 REMARK 3 7 4.0327 - 3.8308 1.00 1557 138 0.2033 0.2184 REMARK 3 8 3.8308 - 3.6640 1.00 1557 138 0.2138 0.2125 REMARK 3 9 3.6640 - 3.5230 1.00 1576 142 0.2509 0.2721 REMARK 3 10 3.5230 - 3.4014 1.00 1547 139 0.2616 0.2433 REMARK 3 11 3.4014 - 3.2951 1.00 1577 147 0.2617 0.2739 REMARK 3 12 3.2951 - 3.2009 1.00 1586 119 0.2687 0.2964 REMARK 3 13 3.2009 - 3.1166 1.00 1529 143 0.2812 0.2805 REMARK 3 14 3.1166 - 3.0406 1.00 1581 145 0.3026 0.3251 REMARK 3 15 3.0406 - 2.9715 1.00 1549 147 0.3648 0.4410 REMARK 3 16 2.9715 - 2.9082 1.00 1558 117 0.4275 0.4802 REMARK 3 17 2.9082 - 2.8501 0.94 1460 148 0.5003 0.4124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4787 REMARK 3 ANGLE : 0.497 7466 REMARK 3 CHIRALITY : 0.026 988 REMARK 3 PLANARITY : 0.002 198 REMARK 3 DIHEDRAL : 14.270 2372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.769 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 62.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 2.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: 4Y1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MM RNA IN 10 MM NA CACODYLATE PH REMARK 280 7, 50 MM NACL, 10 MM MGCL2, MIXED IN A 1:1 RATIO WITH 10% MPD, REMARK 280 40 MM NA CACODYLATE PH 7, 12 MM SPERMINE TETRAHYDROCHLORIDE, 80 REMARK 280 MM SRCL2, 20 MM MGCL2., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.64800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.23150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.58350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.23150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.64800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.58350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GTP B 1 O3' G B 2 P 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A 1 C3' - O3' - P ANGL. DEV. = -32.2 DEGREES REMARK 500 G A 2 O3' - P - O5' ANGL. DEV. = -29.5 DEGREES REMARK 500 G A 2 O3' - P - OP2 ANGL. DEV. = 46.6 DEGREES REMARK 500 G A 2 O3' - P - OP1 ANGL. DEV. = -22.4 DEGREES REMARK 500 GTP B 1 C3' - O3' - P ANGL. DEV. = -30.9 DEGREES REMARK 500 G B 2 O3' - P - O5' ANGL. DEV. = 21.7 DEGREES REMARK 500 G B 2 O3' - P - OP1 ANGL. DEV. = -29.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 123 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 OP1 REMARK 620 2 G A 9 OP2 95.9 REMARK 620 3 A A 10 OP1 92.2 82.2 REMARK 620 4 A A 46 OP1 154.9 104.3 76.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 114 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 34 O6 REMARK 620 2 HOH A 204 O 130.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 120 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 43 O4 REMARK 620 2 G A 66 O6 89.9 REMARK 620 3 HOH A 201 O 68.4 80.5 REMARK 620 4 HOH A 202 O 86.6 161.3 81.2 REMARK 620 5 HOH A 203 O 171.8 91.7 104.0 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 118 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 46 OP2 REMARK 620 2 C A 47 OP2 89.9 REMARK 620 3 A A 48 N1 88.7 86.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 124 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 47 O2 REMARK 620 2 HOH B 203 O 108.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 110 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 77 O6 REMARK 620 2 A A 79 OP1 112.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 112 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 81 OP2 REMARK 620 2 G A 81 O5' 57.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 9 OP1 REMARK 620 2 A B 46 OP2 90.3 REMARK 620 3 C B 47 OP2 80.7 75.4 REMARK 620 4 A B 48 N7 154.8 89.0 74.8 REMARK 620 5 C B 51 OP1 78.0 166.1 95.1 98.3 REMARK 620 6 U B 52 OP2 109.2 101.5 169.7 95.6 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 115 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 9 OP2 REMARK 620 2 A B 46 OP1 92.5 REMARK 620 3 U B 52 OP1 100.5 82.5 REMARK 620 4 HOH B 201 O 98.7 97.3 160.8 REMARK 620 5 HOH B 202 O 154.9 112.6 85.4 77.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 125 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 32 OP1 REMARK 620 2 A B 32 OP2 56.2 REMARK 620 3 A B 32 O5' 66.4 54.8 REMARK 620 4 A B 33 OP2 159.7 125.0 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 130 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 43 O4 REMARK 620 2 G B 66 O6 91.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 113 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 99 O3' REMARK 620 2 C B 99 O2' 79.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AH4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide GTP B 1 and G B 2 DBREF 6N2V A 1 99 PDB 6N2V 6N2V 1 99 DBREF 6N2V B 1 99 PDB 6N2V 6N2V 1 99 SEQRES 1 A 99 GTP G C U U G G G G A G U A SEQRES 2 A 99 G C C U G C U U U C G G A SEQRES 3 A 99 A A C G A A A G C G C C U SEQRES 4 A 99 G U A U C A A C A U A C U SEQRES 5 A 99 C G G C G A A A G C C G U SEQRES 6 A 99 G G U G C A G G A C C G A SEQRES 7 A 99 A A G G U C U G G C G A G SEQRES 8 A 99 A C C A G G C C SEQRES 1 B 99 GTP G C U U G G G G A G U A SEQRES 2 B 99 G C C U G C U U U C G G A SEQRES 3 B 99 A A C G A A A G C G C C U SEQRES 4 B 99 G U A U C A A C A U A C U SEQRES 5 B 99 C G G C G A A A G C C G U SEQRES 6 B 99 G G U G C A G G A C C G A SEQRES 7 B 99 A A G G U C U G G C G A G SEQRES 8 B 99 A C C A G G C C HET GTP A 1 32 HET GTP B 1 32 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HET MG A 107 1 HET MG A 108 1 HET MG A 109 1 HET MG A 110 1 HET MG A 111 1 HET MG A 112 1 HET MG A 113 1 HET MG A 114 1 HET MG A 115 1 HET MG A 116 1 HET MG A 117 1 HET MN A 118 1 HET MN A 119 1 HET SR A 120 1 HET SR A 121 1 HET SR A 122 1 HET SR A 123 1 HET SR A 124 1 HET SR A 125 1 HET MN B 101 1 HET MN B 102 1 HET MN B 103 1 HET MG B 104 1 HET MG B 105 1 HET MG B 106 1 HET MG B 107 1 HET MG B 108 1 HET MG B 109 1 HET MG B 110 1 HET MG B 111 1 HET MG B 112 1 HET MG B 113 1 HET MG B 114 1 HET MG B 115 1 HET MG B 116 1 HET MG B 117 1 HET MG B 118 1 HET MG B 119 1 HET MG B 120 1 HET MG B 121 1 HET MG B 122 1 HET MG B 123 1 HET MG B 124 1 HET MG B 125 1 HET MN B 126 1 HET MN B 127 1 HET NA B 128 1 HET SR B 129 1 HET SR B 130 1 HET SR B 131 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM SR STRONTIUM ION HETNAM NA SODIUM ION FORMUL 1 GTP 2(C10 H16 N5 O14 P3) FORMUL 3 MG 39(MG 2+) FORMUL 20 MN 7(MN 2+) FORMUL 22 SR 9(SR 2+) FORMUL 55 NA NA 1+ FORMUL 59 HOH *7(H2 O) LINK O3' GTP A 1 P G A 2 1555 1555 1.63 LINK O3' GTP B 1 P G B 2 1555 1555 1.71 LINK O6 G A 8 SR SR A 122 1555 1555 2.38 LINK OP1 G A 8 SR SR A 123 1555 1555 2.38 LINK OP2 G A 9 SR SR A 123 1555 1555 2.43 LINK OP2 A A 10 MG MG A 104 1555 1555 2.04 LINK OP1 A A 10 SR SR A 123 1555 1555 2.39 LINK N7 G A 25 SR SR A 125 1555 1555 2.49 LINK O2' A A 33 MG MG A 116 1555 1555 1.99 LINK O6 G A 34 MG MG A 114 1555 1555 2.33 LINK O4 U A 43 SR SR A 120 1555 1555 2.47 LINK OP2 A A 46 MN MN A 118 1555 1555 2.15 LINK OP1 A A 46 SR SR A 123 1555 1555 2.38 LINK OP2 C A 47 MN MN A 118 1555 1555 2.19 LINK O2 C A 47 SR SR A 124 1555 1555 2.41 LINK N1 A A 48 MN MN A 118 1555 1555 2.17 LINK OP1 G A 54 MG MG A 117 1555 1555 2.16 LINK O6 G A 57 MG MG A 103 1555 1555 2.22 LINK O6 G A 66 SR SR A 120 1555 1555 2.47 LINK O6 G A 77 MG MG A 110 1555 1555 2.43 LINK OP1 A A 79 MG MG A 110 1555 1555 2.30 LINK OP2 A A 80 MG MG A 111 1555 1555 2.13 LINK OP2 G A 81 MG MG A 112 1555 1555 2.22 LINK O5' G A 81 MG MG A 112 1555 1555 2.86 LINK OP2 C A 99 MG MG A 108 1555 1555 2.28 LINK MG MG A 114 O HOH A 204 1555 1555 2.07 LINK SR SR A 120 O HOH A 201 1555 1555 2.39 LINK SR SR A 120 O HOH A 202 1555 1555 2.44 LINK SR SR A 120 O HOH A 203 1555 1555 2.42 LINK SR SR A 124 O HOH B 203 1555 1555 2.94 LINK O4 U B 5 MG MG B 109 1555 1555 2.35 LINK O6 G B 8 SR SR B 129 1555 1555 2.40 LINK OP1 G B 9 MN MN B 102 1555 1555 2.30 LINK OP2 G B 9 MG MG B 115 1555 1555 1.85 LINK OP2 A B 13 NA NA B 128 1555 1555 2.53 LINK N7 G B 25 MN MN B 126 1555 1555 2.38 LINK OP1 A B 32 MG MG B 125 1555 1555 2.38 LINK OP2 A B 32 MG MG B 125 1555 1555 2.97 LINK O5' A B 32 MG MG B 125 1555 1555 2.16 LINK OP2 A B 33 MG MG B 125 1555 1555 2.38 LINK O4 U B 43 SR SR B 130 1555 1555 2.46 LINK OP2 A B 46 MN MN B 102 1555 1555 2.32 LINK OP1 A B 46 MG MG B 115 1555 1555 2.03 LINK OP2 C B 47 MN MN B 102 1555 1555 2.07 LINK O2 C B 47 MG MG B 106 1555 1555 2.21 LINK N7 A B 48 MN MN B 102 1555 1555 2.34 LINK OP1 C B 51 MN MN B 102 1555 1555 2.32 LINK OP2 U B 52 MN MN B 102 1555 1555 2.19 LINK OP1 U B 52 MG MG B 115 1555 1555 1.83 LINK OP2 C B 56 MG MG B 122 1555 1555 2.16 LINK O6 G B 57 MN MN B 103 1555 1555 2.10 LINK O6 G B 66 SR SR B 130 1555 1555 2.44 LINK OP2 G B 72 MG MG B 119 1555 1555 2.19 LINK OP2 G B 73 MG MG B 118 1555 1555 2.18 LINK O2' C B 84 MG MG B 108 1555 1555 2.38 LINK O3' C B 99 MG MG B 113 1555 1555 2.22 LINK O2' C B 99 MG MG B 113 1555 1555 2.10 LINK MG MG B 115 O HOH B 201 1555 1555 2.06 LINK MG MG B 115 O HOH B 202 1555 1555 2.06 SITE 1 AC1 1 G A 89 SITE 1 AC2 1 G A 57 SITE 1 AC3 1 A A 10 SITE 1 AC4 1 G A 72 SITE 1 AC5 2 A A 78 G B 11 SITE 1 AC6 1 C A 99 SITE 1 AC7 2 G A 81 MG A 111 SITE 1 AC8 2 G A 77 A A 79 SITE 1 AC9 2 A A 80 MG A 109 SITE 1 AD1 1 G A 81 SITE 1 AD2 1 G A 72 SITE 1 AD3 3 A A 33 G A 34 HOH A 204 SITE 1 AD4 1 A A 33 SITE 1 AD5 2 U A 52 G A 54 SITE 1 AD6 3 A A 46 C A 47 A A 48 SITE 1 AD7 1 C A 88 SITE 1 AD8 5 U A 43 G A 66 HOH A 201 HOH A 202 SITE 2 AD8 5 HOH A 203 SITE 1 AD9 1 U A 68 SITE 1 AE1 1 G A 8 SITE 1 AE2 4 G A 8 G A 9 A A 10 A A 46 SITE 1 AE3 2 C A 47 HOH B 203 SITE 1 AE4 1 G A 25 SITE 1 AE5 2 U B 17 G B 18 SITE 1 AE6 6 G B 9 A B 46 C B 47 A B 48 SITE 2 AE6 6 C B 51 U B 52 SITE 1 AE7 2 G B 57 MG B 122 SITE 1 AE8 1 G B 89 SITE 1 AE9 1 C B 47 SITE 1 AF1 1 A B 10 SITE 1 AF2 2 C B 84 MG B 111 SITE 1 AF3 2 U B 5 G B 6 SITE 1 AF4 1 MG B 108 SITE 1 AF5 2 GTP A 1 C B 99 SITE 1 AF6 6 G B 9 A B 46 C B 51 U B 52 SITE 2 AF6 6 HOH B 201 HOH B 202 SITE 1 AF7 2 U B 41 U B 68 SITE 1 AF8 1 G B 81 SITE 1 AF9 1 G B 73 SITE 1 AG1 1 G B 72 SITE 1 AG2 1 C B 63 SITE 1 AG3 2 G B 54 MG B 123 SITE 1 AG4 3 C B 56 G B 57 MN B 103 SITE 1 AG5 2 G B 55 MG B 121 SITE 1 AG6 1 G B 54 SITE 1 AG7 2 A B 32 A B 33 SITE 1 AG8 1 G B 25 SITE 1 AG9 1 U B 83 SITE 1 AH1 2 A B 13 G B 14 SITE 1 AH2 1 G B 8 SITE 1 AH3 2 U B 43 G B 66 SITE 1 AH4 5 GTP A 1 C A 99 C B 3 C B 98 SITE 2 AH4 5 C B 99 CRYST1 81.296 85.167 92.463 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010815 0.00000 HETATM 1 PG GTP A 1 -4.709 -12.095 38.294 1.00 96.98 P HETATM 2 O1G GTP A 1 -4.694 -10.830 37.470 1.00103.90 O HETATM 3 O2G GTP A 1 -5.714 -13.137 37.589 1.00 90.93 O HETATM 4 O3G GTP A 1 -5.083 -12.001 39.753 1.00 97.35 O HETATM 5 O3B GTP A 1 -3.223 -12.714 38.240 1.00 96.66 O HETATM 6 PB GTP A 1 -2.362 -12.696 36.879 1.00121.14 P HETATM 7 O1B GTP A 1 -3.121 -13.449 35.812 1.00106.66 O HETATM 8 O2B GTP A 1 -1.918 -11.276 36.621 1.00116.33 O HETATM 9 O3A GTP A 1 -1.067 -13.553 37.300 1.00115.86 O HETATM 10 PA GTP A 1 -0.031 -14.111 36.200 1.00117.42 P HETATM 11 O1A GTP A 1 0.165 -13.057 35.136 1.00108.78 O HETATM 12 O2A GTP A 1 1.169 -14.662 36.934 1.00106.86 O HETATM 13 O5' GTP A 1 -0.825 -15.355 35.557 1.00108.03 O HETATM 14 C5' GTP A 1 -0.100 -16.419 34.945 1.00108.65 C HETATM 15 C4' GTP A 1 -0.607 -17.753 35.485 1.00109.36 C HETATM 16 O4' GTP A 1 -1.213 -17.586 36.773 1.00106.33 O HETATM 17 C3' GTP A 1 -1.651 -18.380 34.580 1.00104.47 C HETATM 18 O3' GTP A 1 -1.067 -19.384 33.745 1.00103.72 O HETATM 19 C2' GTP A 1 -2.655 -19.002 35.527 1.00101.55 C HETATM 20 O2' GTP A 1 -2.372 -20.395 35.696 1.00 95.77 O HETATM 21 C1' GTP A 1 -2.470 -18.271 36.847 1.00100.67 C HETATM 22 N9 GTP A 1 -3.558 -17.278 37.047 1.00 91.60 N HETATM 23 C8 GTP A 1 -3.370 -16.004 37.441 1.00 94.17 C HETATM 24 N7 GTP A 1 -4.547 -15.337 37.540 1.00 89.98 N HETATM 25 C5 GTP A 1 -5.527 -16.195 37.208 1.00 85.70 C HETATM 26 C6 GTP A 1 -7.005 -16.134 37.106 1.00 80.39 C HETATM 27 O6 GTP A 1 -7.626 -15.080 37.366 1.00 73.37 O HETATM 28 N1 GTP A 1 -7.657 -17.240 36.730 1.00 79.10 N HETATM 29 C2 GTP A 1 -7.014 -18.388 36.443 1.00 82.86 C HETATM 30 N2 GTP A 1 -7.750 -19.462 36.070 1.00 82.80 N HETATM 31 N3 GTP A 1 -5.662 -18.517 36.516 1.00 84.43 N HETATM 32 C4 GTP A 1 -4.875 -17.475 36.885 1.00 85.43 C