HEADER PROTEIN BINDING 14-NOV-18 6N31 TITLE WD REPEATS OF HUMAN WDR12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN WDR12; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: WD REPEAT-CONTAINING PROTEIN 12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR12; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS WD REPEAT, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,H.ZENG,W.TEMPEL,Y.LI,A.SEITOVA,A.HUTCHINSON,C.BOUNTRA, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 11-OCT-23 6N31 1 REMARK REVDAT 1 12-DEC-18 6N31 0 JRNL AUTH L.HALABELIAN,H.ZENG,W.TEMPEL,Y.LI,A.SEITOVA,A.HUTCHINSON, JRNL AUTH 2 C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL WD REPEATS OF HUMAN WDR12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 21880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2862 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2748 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 114 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.05930 REMARK 3 B22 (A**2) : -2.61140 REMARK 3 B33 (A**2) : 5.67060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.672 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.280 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.681 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.285 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4826 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6592 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1585 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 717 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4826 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 660 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5338 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.59 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|91 - A|414 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.0389 -27.9797 -25.3058 REMARK 3 T TENSOR REMARK 3 T11: -0.1039 T22: -0.0765 REMARK 3 T33: -0.1370 T12: 0.0245 REMARK 3 T13: -0.0200 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.3296 L22: 1.2221 REMARK 3 L33: 1.8662 L12: -1.0357 REMARK 3 L13: 0.4428 L23: -0.4054 REMARK 3 S TENSOR REMARK 3 S11: -0.2195 S12: -0.3901 S13: 0.1351 REMARK 3 S21: 0.3110 S22: 0.1475 S23: -0.0602 REMARK 3 S31: -0.0699 S32: -0.1901 S33: 0.0720 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|91 - B|415 } REMARK 3 ORIGIN FOR THE GROUP (A): -26.3564 -24.1473 -58.9862 REMARK 3 T TENSOR REMARK 3 T11: -0.0462 T22: -0.1119 REMARK 3 T33: -0.1089 T12: 0.0235 REMARK 3 T13: 0.0044 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.3060 L22: 1.4647 REMARK 3 L33: 1.7178 L12: 0.5247 REMARK 3 L13: 0.3536 L23: 0.4640 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.0320 S13: -0.0169 REMARK 3 S21: -0.3460 S22: 0.0797 S23: 0.0432 REMARK 3 S31: 0.0034 S32: -0.0678 S33: -0.0202 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE FACTOR AMPLITUDES WERE REMARK 3 DERIVED FROM THE FIRST 400 0.2 DEGREE DIFFRACTION IMAGES OF THE REMARK 3 DATA SET. REMARK 4 REMARK 4 6N31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21949 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 76.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OW8, SIDE CHAINS MODELED WITH REMARK 200 FFAS03/SCWRL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 GLY A 81 REMARK 465 ARG A 82 REMARK 465 GLU A 83 REMARK 465 ASN A 84 REMARK 465 LEU A 85 REMARK 465 TYR A 86 REMARK 465 PHE A 87 REMARK 465 GLN A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 ALA A 91 REMARK 465 PRO A 92 REMARK 465 GLN A 93 REMARK 465 GLU A 228 REMARK 465 GLU A 229 REMARK 465 SER A 230 REMARK 465 THR A 231 REMARK 465 ASN A 232 REMARK 465 ARG A 233 REMARK 465 PRO A 234 REMARK 465 ARG A 235 REMARK 465 LYS A 236 REMARK 465 LYS A 237 REMARK 465 GLN A 238 REMARK 465 LYS A 239 REMARK 465 THR A 240 REMARK 465 GLU A 241 REMARK 465 PRO A 416 REMARK 465 THR A 417 REMARK 465 THR A 418 REMARK 465 SER A 419 REMARK 465 HIS A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 MET B 72 REMARK 465 HIS B 73 REMARK 465 HIS B 74 REMARK 465 HIS B 75 REMARK 465 HIS B 76 REMARK 465 HIS B 77 REMARK 465 HIS B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 GLY B 81 REMARK 465 ARG B 82 REMARK 465 GLU B 83 REMARK 465 ASN B 84 REMARK 465 LEU B 85 REMARK 465 TYR B 86 REMARK 465 PHE B 87 REMARK 465 GLN B 88 REMARK 465 GLY B 89 REMARK 465 THR B 90 REMARK 465 GLU B 228 REMARK 465 GLU B 229 REMARK 465 SER B 230 REMARK 465 THR B 231 REMARK 465 ASN B 232 REMARK 465 ARG B 233 REMARK 465 PRO B 234 REMARK 465 ARG B 235 REMARK 465 LYS B 236 REMARK 465 LYS B 237 REMARK 465 GLN B 238 REMARK 465 LYS B 239 REMARK 465 THR B 240 REMARK 465 GLU B 241 REMARK 465 THR B 417 REMARK 465 THR B 418 REMARK 465 SER B 419 REMARK 465 HIS B 420 REMARK 465 VAL B 421 REMARK 465 GLY B 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 112 OE1 OE2 REMARK 470 LYS A 121 NZ REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 LEU A 154 CG CD1 CD2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 178 CD CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 ARG A 186 NH1 NH2 REMARK 470 LYS A 203 CE NZ REMARK 470 LYS A 211 NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ASP A 225 CG OD1 OD2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 GLU A 258 OE1 OE2 REMARK 470 VAL A 285 CG1 CG2 REMARK 470 SER A 287 OG REMARK 470 SER A 289 OG REMARK 470 LYS A 291 CE NZ REMARK 470 LYS A 310 CD CE NZ REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 LEU A 333 CG CD1 CD2 REMARK 470 THR A 353 OG1 CG2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 SER A 374 OG REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 LYS A 388 NZ REMARK 470 SER A 415 C O CB OG REMARK 470 GLN B 93 CG CD OE1 NE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 GLU B 112 OE1 OE2 REMARK 470 LYS B 121 NZ REMARK 470 LYS B 144 NZ REMARK 470 SER B 153 OG REMARK 470 LEU B 154 CG CD1 CD2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 178 CD CE NZ REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 LYS B 203 CE NZ REMARK 470 ASP B 222 CG OD1 OD2 REMARK 470 GLU B 223 CG CD OE1 OE2 REMARK 470 ASP B 225 CG OD1 OD2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 SER B 287 OG REMARK 470 SER B 289 OG REMARK 470 LYS B 291 NZ REMARK 470 ASN B 297 CG OD1 ND2 REMARK 470 LYS B 310 CD CE NZ REMARK 470 LYS B 329 CG CD CE NZ REMARK 470 ASP B 330 CG OD1 OD2 REMARK 470 LYS B 349 NZ REMARK 470 GLN B 356 CD OE1 NE2 REMARK 470 ASP B 396 CG OD1 OD2 REMARK 470 LYS B 408 NZ REMARK 470 SER B 415 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 110 -168.36 -128.17 REMARK 500 ALA A 147 139.55 -170.11 REMARK 500 THR A 317 46.20 -83.41 REMARK 500 SER A 340 -42.46 -156.55 REMARK 500 THR A 372 26.05 -75.81 REMARK 500 PRO B 94 92.94 -62.72 REMARK 500 ALA B 110 -169.22 -127.67 REMARK 500 THR B 317 45.99 -82.73 REMARK 500 LYS B 329 -70.54 -72.23 REMARK 500 SER B 340 -39.03 -159.46 REMARK 500 SER B 374 74.00 -166.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 6N31 A 90 422 UNP Q9GZL7 WDR12_HUMAN 90 422 DBREF 6N31 B 90 422 UNP Q9GZL7 WDR12_HUMAN 90 422 SEQADV 6N31 MET A 72 UNP Q9GZL7 INITIATING METHIONINE SEQADV 6N31 HIS A 73 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS A 74 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS A 75 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS A 76 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS A 77 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS A 78 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 SER A 79 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 SER A 80 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLY A 81 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 ARG A 82 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLU A 83 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 ASN A 84 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 LEU A 85 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 TYR A 86 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 PHE A 87 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLN A 88 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLY A 89 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLY A 286 UNP Q9GZL7 GLU 286 CONFLICT SEQADV 6N31 MET B 72 UNP Q9GZL7 INITIATING METHIONINE SEQADV 6N31 HIS B 73 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS B 74 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS B 75 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS B 76 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS B 77 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 HIS B 78 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 SER B 79 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 SER B 80 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLY B 81 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 ARG B 82 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLU B 83 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 ASN B 84 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 LEU B 85 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 TYR B 86 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 PHE B 87 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLN B 88 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLY B 89 UNP Q9GZL7 EXPRESSION TAG SEQADV 6N31 GLY B 286 UNP Q9GZL7 GLU 286 CONFLICT SEQRES 1 A 351 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 351 LEU TYR PHE GLN GLY THR ALA PRO GLN PRO GLU GLN CYS SEQRES 3 A 351 MET PHE HIS ASP ASP TRP ILE SER SER ILE LYS GLY ALA SEQRES 4 A 351 GLU GLU TRP ILE LEU THR GLY SER TYR ASP LYS THR SER SEQRES 5 A 351 ARG ILE TRP SER LEU GLU GLY LYS SER ILE MET THR ILE SEQRES 6 A 351 VAL GLY HIS THR ASP VAL VAL LYS ASP VAL ALA TRP VAL SEQRES 7 A 351 LYS LYS ASP SER LEU SER CYS LEU LEU LEU SER ALA SER SEQRES 8 A 351 MET ASP GLN THR ILE LEU LEU TRP GLU TRP ASN VAL GLU SEQRES 9 A 351 ARG ASN LYS VAL LYS ALA LEU HIS CYS CYS ARG GLY HIS SEQRES 10 A 351 ALA GLY SER VAL ASP SER ILE ALA VAL ASP GLY SER GLY SEQRES 11 A 351 THR LYS PHE CYS SER GLY SER TRP ASP LYS MET LEU LYS SEQRES 12 A 351 ILE TRP SER THR VAL PRO THR ASP GLU GLU ASP GLU MET SEQRES 13 A 351 GLU GLU SER THR ASN ARG PRO ARG LYS LYS GLN LYS THR SEQRES 14 A 351 GLU GLN LEU GLY LEU THR ARG THR PRO ILE VAL THR LEU SEQRES 15 A 351 SER GLY HIS MET GLU ALA VAL SER SER VAL LEU TRP SER SEQRES 16 A 351 ASP ALA GLU GLU ILE CYS SER ALA SER TRP ASP HIS THR SEQRES 17 A 351 ILE ARG VAL TRP ASP VAL GLY SER GLY SER LEU LYS SER SEQRES 18 A 351 THR LEU THR GLY ASN LYS VAL PHE ASN CYS ILE SER TYR SEQRES 19 A 351 SER PRO LEU CYS LYS ARG LEU ALA SER GLY SER THR ASP SEQRES 20 A 351 ARG HIS ILE ARG LEU TRP ASP PRO ARG THR LYS ASP GLY SEQRES 21 A 351 SER LEU VAL SER LEU SER LEU THR SER HIS THR GLY TRP SEQRES 22 A 351 VAL THR SER VAL LYS TRP SER PRO THR HIS GLU GLN GLN SEQRES 23 A 351 LEU ILE SER GLY SER LEU ASP ASN ILE VAL LYS LEU TRP SEQRES 24 A 351 ASP THR ARG SER CYS LYS ALA PRO LEU TYR ASP LEU ALA SEQRES 25 A 351 ALA HIS GLU ASP LYS VAL LEU SER VAL ASP TRP THR ASP SEQRES 26 A 351 THR GLY LEU LEU LEU SER GLY GLY ALA ASP ASN LYS LEU SEQRES 27 A 351 TYR SER TYR ARG TYR SER PRO THR THR SER HIS VAL GLY SEQRES 1 B 351 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 351 LEU TYR PHE GLN GLY THR ALA PRO GLN PRO GLU GLN CYS SEQRES 3 B 351 MET PHE HIS ASP ASP TRP ILE SER SER ILE LYS GLY ALA SEQRES 4 B 351 GLU GLU TRP ILE LEU THR GLY SER TYR ASP LYS THR SER SEQRES 5 B 351 ARG ILE TRP SER LEU GLU GLY LYS SER ILE MET THR ILE SEQRES 6 B 351 VAL GLY HIS THR ASP VAL VAL LYS ASP VAL ALA TRP VAL SEQRES 7 B 351 LYS LYS ASP SER LEU SER CYS LEU LEU LEU SER ALA SER SEQRES 8 B 351 MET ASP GLN THR ILE LEU LEU TRP GLU TRP ASN VAL GLU SEQRES 9 B 351 ARG ASN LYS VAL LYS ALA LEU HIS CYS CYS ARG GLY HIS SEQRES 10 B 351 ALA GLY SER VAL ASP SER ILE ALA VAL ASP GLY SER GLY SEQRES 11 B 351 THR LYS PHE CYS SER GLY SER TRP ASP LYS MET LEU LYS SEQRES 12 B 351 ILE TRP SER THR VAL PRO THR ASP GLU GLU ASP GLU MET SEQRES 13 B 351 GLU GLU SER THR ASN ARG PRO ARG LYS LYS GLN LYS THR SEQRES 14 B 351 GLU GLN LEU GLY LEU THR ARG THR PRO ILE VAL THR LEU SEQRES 15 B 351 SER GLY HIS MET GLU ALA VAL SER SER VAL LEU TRP SER SEQRES 16 B 351 ASP ALA GLU GLU ILE CYS SER ALA SER TRP ASP HIS THR SEQRES 17 B 351 ILE ARG VAL TRP ASP VAL GLY SER GLY SER LEU LYS SER SEQRES 18 B 351 THR LEU THR GLY ASN LYS VAL PHE ASN CYS ILE SER TYR SEQRES 19 B 351 SER PRO LEU CYS LYS ARG LEU ALA SER GLY SER THR ASP SEQRES 20 B 351 ARG HIS ILE ARG LEU TRP ASP PRO ARG THR LYS ASP GLY SEQRES 21 B 351 SER LEU VAL SER LEU SER LEU THR SER HIS THR GLY TRP SEQRES 22 B 351 VAL THR SER VAL LYS TRP SER PRO THR HIS GLU GLN GLN SEQRES 23 B 351 LEU ILE SER GLY SER LEU ASP ASN ILE VAL LYS LEU TRP SEQRES 24 B 351 ASP THR ARG SER CYS LYS ALA PRO LEU TYR ASP LEU ALA SEQRES 25 B 351 ALA HIS GLU ASP LYS VAL LEU SER VAL ASP TRP THR ASP SEQRES 26 B 351 THR GLY LEU LEU LEU SER GLY GLY ALA ASP ASN LYS LEU SEQRES 27 B 351 TYR SER TYR ARG TYR SER PRO THR THR SER HIS VAL GLY HET UNX A 501 1 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX B 501 1 HET UNX B 502 1 HET UNX B 503 1 HET UNX B 504 1 HET UNX B 505 1 HET UNX B 506 1 HET UNX B 507 1 HET UNX B 508 1 HET UNX B 509 1 HET UNX B 510 1 HET UNX B 511 1 HET UNX B 512 1 HET UNX B 513 1 HET UNX B 514 1 HET UNX B 515 1 HET UNX B 516 1 HET UNX B 517 1 HET UNX B 518 1 HET UNX B 519 1 HET UNX B 520 1 HET UNX B 521 1 HET UNX B 522 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 36(X) SHEET 1 AA1 4 GLN A 96 PHE A 99 0 SHEET 2 AA1 4 LYS A 408 ARG A 413 -1 O LEU A 409 N MET A 98 SHEET 3 AA1 4 LEU A 399 GLY A 404 -1 N SER A 402 O TYR A 410 SHEET 4 AA1 4 VAL A 389 TRP A 394 -1 N LEU A 390 O GLY A 403 SHEET 1 AA2 4 ILE A 104 GLY A 109 0 SHEET 2 AA2 4 TRP A 113 SER A 118 -1 O LEU A 115 N LYS A 108 SHEET 3 AA2 4 SER A 123 SER A 127 -1 O TRP A 126 N ILE A 114 SHEET 4 AA2 4 SER A 132 ILE A 136 -1 O ILE A 136 N SER A 123 SHEET 1 AA3 5 VAL A 143 LYS A 150 0 SHEET 2 AA3 5 SER A 155 SER A 162 -1 O ALA A 161 N ASP A 145 SHEET 3 AA3 5 ILE A 167 ASN A 173 -1 O TRP A 170 N LEU A 158 SHEET 4 AA3 5 LYS A 178 CYS A 185 -1 O CYS A 185 N ILE A 167 SHEET 5 AA3 5 LEU A 245 ARG A 247 1 O ARG A 247 N CYS A 184 SHEET 1 AA4 4 VAL A 192 VAL A 197 0 SHEET 2 AA4 4 LYS A 203 SER A 208 -1 O GLY A 207 N SER A 194 SHEET 3 AA4 4 LEU A 213 SER A 217 -1 O TRP A 216 N PHE A 204 SHEET 4 AA4 4 VAL A 251 LEU A 253 -1 O VAL A 251 N ILE A 215 SHEET 1 AA5 4 VAL A 260 TRP A 265 0 SHEET 2 AA5 4 GLU A 270 SER A 275 -1 O ALA A 274 N SER A 262 SHEET 3 AA5 4 THR A 279 ASP A 284 -1 O TRP A 283 N ILE A 271 SHEET 4 AA5 4 SER A 289 THR A 295 -1 O LEU A 294 N ILE A 280 SHEET 1 AA6 4 PHE A 300 SER A 306 0 SHEET 2 AA6 4 ARG A 311 SER A 316 -1 O GLY A 315 N ASN A 301 SHEET 3 AA6 4 HIS A 320 TRP A 324 -1 O TRP A 324 N LEU A 312 SHEET 4 AA6 4 SER A 335 THR A 339 -1 O LEU A 336 N LEU A 323 SHEET 1 AA7 4 VAL A 345 TRP A 350 0 SHEET 2 AA7 4 GLN A 357 SER A 362 -1 O ILE A 359 N LYS A 349 SHEET 3 AA7 4 VAL A 367 ASP A 371 -1 O TRP A 370 N LEU A 358 SHEET 4 AA7 4 TYR A 380 LEU A 382 -1 O LEU A 382 N VAL A 367 SHEET 1 AA8 4 GLN B 93 PHE B 99 0 SHEET 2 AA8 4 LYS B 408 ARG B 413 -1 O LEU B 409 N MET B 98 SHEET 3 AA8 4 LEU B 399 GLY B 404 -1 N SER B 402 O TYR B 410 SHEET 4 AA8 4 VAL B 389 TRP B 394 -1 N LEU B 390 O GLY B 403 SHEET 1 AA9 4 ILE B 104 GLY B 109 0 SHEET 2 AA9 4 TRP B 113 SER B 118 -1 O LEU B 115 N LYS B 108 SHEET 3 AA9 4 SER B 123 SER B 127 -1 O TRP B 126 N ILE B 114 SHEET 4 AA9 4 SER B 132 ILE B 136 -1 O ILE B 133 N ILE B 125 SHEET 1 AB1 5 VAL B 143 LYS B 150 0 SHEET 2 AB1 5 SER B 155 SER B 162 -1 O ALA B 161 N ASP B 145 SHEET 3 AB1 5 ILE B 167 ASN B 173 -1 O TRP B 170 N LEU B 158 SHEET 4 AB1 5 LYS B 178 CYS B 185 -1 O CYS B 185 N ILE B 167 SHEET 5 AB1 5 LEU B 245 ARG B 247 1 O ARG B 247 N CYS B 184 SHEET 1 AB2 4 VAL B 192 VAL B 197 0 SHEET 2 AB2 4 LYS B 203 SER B 208 -1 O GLY B 207 N SER B 194 SHEET 3 AB2 4 LEU B 213 SER B 217 -1 O TRP B 216 N PHE B 204 SHEET 4 AB2 4 VAL B 251 LEU B 253 -1 O VAL B 251 N ILE B 215 SHEET 1 AB3 4 VAL B 260 TRP B 265 0 SHEET 2 AB3 4 GLU B 270 SER B 275 -1 O ALA B 274 N SER B 262 SHEET 3 AB3 4 THR B 279 ASP B 284 -1 O TRP B 283 N ILE B 271 SHEET 4 AB3 4 SER B 289 THR B 295 -1 O LEU B 294 N ILE B 280 SHEET 1 AB4 4 PHE B 300 SER B 306 0 SHEET 2 AB4 4 ARG B 311 SER B 316 -1 O GLY B 315 N ASN B 301 SHEET 3 AB4 4 HIS B 320 TRP B 324 -1 O TRP B 324 N LEU B 312 SHEET 4 AB4 4 LEU B 338 THR B 339 -1 O LEU B 338 N ILE B 321 SHEET 1 AB5 4 VAL B 345 TRP B 350 0 SHEET 2 AB5 4 GLN B 357 SER B 362 -1 O ILE B 359 N LYS B 349 SHEET 3 AB5 4 VAL B 367 ASP B 371 -1 O TRP B 370 N LEU B 358 SHEET 4 AB5 4 TYR B 380 LEU B 382 -1 O LEU B 382 N VAL B 367 CRYST1 52.740 87.050 155.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006416 0.00000