HEADER OXIDOREDUCTASE 21-NOV-18 6N56 TITLE CRYSTAL STRUCTURE OF FUMARATE REDUCTASE, FLAVO PROTEIN SUBUNIT, FROM TITLE 2 HELICOBACTER PYLORI G27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE REDUCTASE, FLAVO PROTEIN SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: FRDA, HPG27_176; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HEPYC.18004.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, HELICOBACTER PYLORI, FUMARATE REDUCTASE, KEYWDS 2 FLAVO PROTEIN SUBUNIT, OXIDOREDUCTASE, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6N56 1 REMARK REVDAT 1 19-DEC-18 6N56 0 JRNL AUTH J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF FUMARATE REDUCTASE, FLAVO PROTEIN JRNL TITL 2 SUBUNIT, FROM HELICOBACTER PYLORI G27 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.350 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4739 - 5.6612 0.98 2329 174 0.1740 0.2260 REMARK 3 2 5.6612 - 4.4946 0.99 2209 136 0.1493 0.1715 REMARK 3 3 4.4946 - 3.9267 0.99 2171 143 0.1297 0.1538 REMARK 3 4 3.9267 - 3.5678 1.00 2141 146 0.1578 0.2259 REMARK 3 5 3.5678 - 3.3122 1.00 2159 146 0.1790 0.2138 REMARK 3 6 3.3122 - 3.1169 1.00 2116 150 0.1905 0.2429 REMARK 3 7 3.1169 - 2.9609 1.00 2124 135 0.1970 0.2805 REMARK 3 8 2.9609 - 2.8320 1.00 2100 147 0.2114 0.2940 REMARK 3 9 2.8320 - 2.7230 1.00 2109 154 0.2051 0.2874 REMARK 3 10 2.7230 - 2.6290 1.00 2093 139 0.1977 0.2695 REMARK 3 11 2.6290 - 2.5468 1.00 2093 118 0.1929 0.2368 REMARK 3 12 2.5468 - 2.4740 1.00 2069 166 0.1974 0.2618 REMARK 3 13 2.4740 - 2.4089 1.00 2116 132 0.1945 0.2761 REMARK 3 14 2.4089 - 2.3501 1.00 2057 142 0.1853 0.2475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4917 REMARK 3 ANGLE : 0.814 6652 REMARK 3 CHIRALITY : 0.048 732 REMARK 3 PLANARITY : 0.005 874 REMARK 3 DIHEDRAL : 14.580 2951 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 653 THROUGH 707 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5540 0.0259 136.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.4981 T22: 0.4838 REMARK 3 T33: 0.4144 T12: 0.0230 REMARK 3 T13: 0.0026 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 3.5315 L22: 4.2203 REMARK 3 L33: 5.3893 L12: -0.2760 REMARK 3 L13: 1.4710 L23: -0.4174 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: -0.7383 S13: -0.5808 REMARK 3 S21: 0.6284 S22: 0.2106 S23: -0.2077 REMARK 3 S31: 0.8423 S32: -0.1514 S33: -0.3228 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2960 7.1527 109.2631 REMARK 3 T TENSOR REMARK 3 T11: 0.3564 T22: 0.2719 REMARK 3 T33: 0.2890 T12: 0.0099 REMARK 3 T13: 0.0050 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 2.7328 L22: 0.7619 REMARK 3 L33: 3.3332 L12: 0.3368 REMARK 3 L13: 0.9141 L23: -0.0961 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.2342 S13: -0.0911 REMARK 3 S21: -0.1012 S22: 0.0834 S23: 0.0570 REMARK 3 S31: 0.0704 S32: -0.3946 S33: -0.0271 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0957 9.6341 103.5786 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.2718 REMARK 3 T33: 0.2760 T12: -0.0378 REMARK 3 T13: -0.0014 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 3.4518 L22: 0.9439 REMARK 3 L33: 2.9569 L12: -0.1837 REMARK 3 L13: 0.2746 L23: -0.3244 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.3614 S13: -0.1249 REMARK 3 S21: -0.3676 S22: 0.1150 S23: -0.0293 REMARK 3 S31: 0.2770 S32: 0.1633 S33: 0.0183 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7451 -10.2633 111.5165 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.3616 REMARK 3 T33: 0.6997 T12: 0.0309 REMARK 3 T13: 0.0965 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.5933 L22: 3.3794 REMARK 3 L33: 1.6451 L12: -0.7061 REMARK 3 L13: -0.0556 L23: 0.7267 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.0028 S13: -1.0471 REMARK 3 S21: -0.3559 S22: -0.0062 S23: -0.2543 REMARK 3 S31: 0.3716 S32: 0.3676 S33: -0.0346 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3756 16.3727 111.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.3752 T22: 0.2614 REMARK 3 T33: 0.3529 T12: -0.0119 REMARK 3 T13: -0.0133 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.4522 L22: 0.8835 REMARK 3 L33: 2.1215 L12: 0.1926 REMARK 3 L13: -0.2113 L23: 0.0182 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: 0.0126 S13: 0.1308 REMARK 3 S21: -0.1266 S22: 0.1049 S23: -0.1080 REMARK 3 S31: -0.1280 S32: 0.1116 S33: -0.0138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.464 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.08 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.48 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 2BS2 AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.9 MG/ML HEPYC.18004.A.B1.PS38425 REMARK 280 AGAINST MOLECULAR DIMENSIONS MORPHEUS SCREEN, D9 (10% PEG20000, REMARK 280 20% PEG550 MME, 20 MM 1,6-HEXANEDIOL, 20 MM 1-BUTANOL, 20 MM (RS) REMARK 280 -1,2- PROPANEDIOL 2-PROPANOL, 20 NM 1,4-BUTANEDIOL, 20 MM 1,3- REMARK 280 PROPANEDIOL, 100 MM BICINE/TRIZMA BASE, PH 8.5), DIRECT REMARK 280 CRYOPROTECTION, TRAY 300244D9, PUCK IPI5-8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 177.26500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.94500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.63250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.94500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 265.89750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.94500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.63250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.94500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 265.89750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 177.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ARG A 41 REMARK 465 SER A 42 REMARK 465 HIS A 43 REMARK 465 SER A 44 REMARK 465 ALA A 45 REMARK 465 ALA A 46 REMARK 465 ALA A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 GLY A 50 REMARK 465 MET A 51 REMARK 465 GLN A 52 REMARK 465 ALA A 53 REMARK 465 SER A 54 REMARK 465 LEU A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 ALA A 58 REMARK 465 LYS A 59 REMARK 465 LYS A 60 REMARK 465 SER A 61 REMARK 465 GLU A 62 REMARK 465 LYS A 111 REMARK 465 LYS A 112 REMARK 465 GLY A 113 REMARK 465 ASP A 114 REMARK 465 ARG A 115 REMARK 465 PRO A 116 REMARK 465 ALA A 117 REMARK 465 VAL A 118 REMARK 465 VAL A 119 REMARK 465 ASN A 120 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 HIS A 123 REMARK 465 VAL A 124 REMARK 465 ILE A 125 REMARK 465 ILE A 126 REMARK 465 THR A 127 REMARK 465 GLU A 128 REMARK 465 ARG A 129 REMARK 465 ASP A 130 REMARK 465 ASP A 131 REMARK 465 ARG A 132 REMARK 465 HIS A 133 REMARK 465 GLY A 134 REMARK 465 TYR A 135 REMARK 465 ILE A 136 REMARK 465 LEU A 137 REMARK 465 SER A 138 REMARK 465 ARG A 139 REMARK 465 ASP A 140 REMARK 465 PHE A 141 REMARK 465 GLY A 142 REMARK 465 GLY A 143 REMARK 465 THR A 144 REMARK 465 LYS A 145 REMARK 465 LYS A 146 REMARK 465 TRP A 147 REMARK 465 ARG A 148 REMARK 465 THR A 149 REMARK 465 CYS A 150 REMARK 465 PHE A 151 REMARK 465 THR A 152 REMARK 465 ALA A 153 REMARK 465 ASP A 154 REMARK 465 ALA A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 HIS A 158 REMARK 465 GLU A 270 REMARK 465 GLY A 271 REMARK 465 CYS A 272 REMARK 465 ARG A 273 REMARK 465 GLY A 274 REMARK 465 LEU A 708 REMARK 465 LYS A 709 REMARK 465 GLY A 710 REMARK 465 GLU A 711 REMARK 465 HIS A 712 REMARK 465 HIS A 713 REMARK 465 GLU A 714 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LEU A 36 CG CD1 CD2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 107 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 107 CZ3 CH2 REMARK 470 THR A 108 OG1 CG2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 SER A 264 OG REMARK 470 THR A 269 OG1 CG2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 ASN A 341 CG OD1 ND2 REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 ASP A 347 CG OD1 OD2 REMARK 470 ILE A 348 CG1 CG2 CD1 REMARK 470 GLU A 361 CG CD OE1 OE2 REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 GLN A 369 CG CD OE1 NE2 REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 VAL A 437 CG1 CG2 REMARK 470 GLN A 459 CG CD OE1 NE2 REMARK 470 ILE A 460 CG1 CG2 CD1 REMARK 470 ASN A 463 CG OD1 ND2 REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 GLU A 473 CG CD OE1 OE2 REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 GLU A 492 CG CD OE1 OE2 REMARK 470 GLU A 495 CG CD OE1 OE2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 LYS A 519 CG CD CE NZ REMARK 470 LYS A 534 CG CD CE NZ REMARK 470 GLU A 637 CG CD OE1 OE2 REMARK 470 LYS A 652 CG CD CE NZ REMARK 470 MET A 678 CG SD CE REMARK 470 LEU A 680 CG CD1 CD2 REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 684 CG CD OE1 OE2 REMARK 470 ARG A 688 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 106 3.61 -67.02 REMARK 500 TRP A 107 -16.80 71.54 REMARK 500 ARG A 178 14.16 51.76 REMARK 500 ALA A 215 52.30 -143.23 REMARK 500 VAL A 245 -57.04 -122.47 REMARK 500 THR A 259 54.99 -112.52 REMARK 500 LYS A 296 -135.84 57.05 REMARK 500 ALA A 299 172.18 -59.52 REMARK 500 LEU A 342 33.64 -148.33 REMARK 500 HIS A 396 -38.28 -135.82 REMARK 500 ASN A 430 119.68 -173.95 REMARK 500 LYS A 536 59.88 -104.78 REMARK 500 ASN A 540 68.48 29.33 REMARK 500 ASP A 620 -152.26 -153.55 REMARK 500 MET A 665 90.58 -162.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HEPYC.18004.A RELATED DB: TARGETTRACK DBREF 6N56 A 1 714 UNP B5Z9W3 B5Z9W3_HELPG 1 714 SEQADV 6N56 MET A -7 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 ALA A -6 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 HIS A -5 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 HIS A -4 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 HIS A -3 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 HIS A -2 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 HIS A -1 UNP B5Z9W3 EXPRESSION TAG SEQADV 6N56 HIS A 0 UNP B5Z9W3 EXPRESSION TAG SEQRES 1 A 722 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ILE THR TYR SEQRES 2 A 722 CYS ASP ALA LEU ILE ILE GLY GLY GLY LEU ALA GLY LEU SEQRES 3 A 722 ARG ALA SER ILE ALA CYS LYS GLN LYS GLY LEU ASN THR SEQRES 4 A 722 ILE VAL LEU SER LEU VAL PRO VAL ARG ARG SER HIS SER SEQRES 5 A 722 ALA ALA ALA GLN GLY GLY MET GLN ALA SER LEU ALA ASN SEQRES 6 A 722 ALA LYS LYS SER GLU GLY ASP ASN GLU ASP LEU HIS PHE SEQRES 7 A 722 LEU ASP THR VAL LYS GLY SER ASP TRP GLY CYS ASP GLN SEQRES 8 A 722 GLN VAL ALA ARG MET PHE VAL THR THR ALA PRO LYS ALA SEQRES 9 A 722 ILE ARG GLU LEU ALA SER TRP GLY VAL PRO TRP THR ARG SEQRES 10 A 722 ILE LYS LYS GLY ASP ARG PRO ALA VAL VAL ASN GLY GLU SEQRES 11 A 722 HIS VAL ILE ILE THR GLU ARG ASP ASP ARG HIS GLY TYR SEQRES 12 A 722 ILE LEU SER ARG ASP PHE GLY GLY THR LYS LYS TRP ARG SEQRES 13 A 722 THR CYS PHE THR ALA ASP ALA THR GLY HIS THR MET LEU SEQRES 14 A 722 TYR ALA VAL ALA ASN GLU ALA LEU HIS HIS LYS VAL ASP SEQRES 15 A 722 ILE GLN ASP ARG LYS ASP MET LEU ALA PHE ILE HIS HIS SEQRES 16 A 722 ASP ASN LYS CYS TYR GLY ALA VAL VAL ARG ASP LEU ILE SEQRES 17 A 722 THR GLY GLU ILE SER ALA TYR VAL SER LYS GLY THR LEU SEQRES 18 A 722 LEU ALA THR GLY GLY TYR GLY ARG VAL TYR LYS HIS THR SEQRES 19 A 722 THR ASN ALA VAL ILE CYS ASP GLY ALA GLY ALA ALA SER SEQRES 20 A 722 ALA LEU GLU THR GLY VAL ALA LYS LEU GLY ASN MET GLU SEQRES 21 A 722 ALA VAL GLN PHE HIS PRO THR ALA LEU VAL PRO SER GLY SEQRES 22 A 722 ILE LEU MET THR GLU GLY CYS ARG GLY ASP GLY GLY VAL SEQRES 23 A 722 LEU ARG ASP LYS PHE GLY ARG ARG PHE MET PRO ALA TYR SEQRES 24 A 722 GLU PRO GLU LYS LYS GLU LEU ALA SER ARG ASP VAL VAL SEQRES 25 A 722 SER ARG ARG ILE LEU GLU HIS ILE GLN LYS GLY TYR GLY SEQRES 26 A 722 ALA LYS SER PRO TYR GLY ASP HIS VAL TRP LEU ASP ILE SEQRES 27 A 722 ALA ILE LEU GLY ARG ASN HIS VAL GLU LYS ASN LEU ARG SEQRES 28 A 722 ASP VAL ARG ASP ILE ALA MET THR PHE ALA GLY ILE ASP SEQRES 29 A 722 PRO ALA ASP SER GLU GLU GLN THR LYS ASP ASN MET GLN SEQRES 30 A 722 GLY MET PRO ALA ASN GLU PRO GLU TYR GLY GLN ALA MET SEQRES 31 A 722 ALA LYS GLN LYS GLY TRP ILE PRO ILE LYS PRO MET GLN SEQRES 32 A 722 HIS TYR SER MET GLY GLY VAL ARG THR ASN PRO LYS GLY SEQRES 33 A 722 GLU THR HIS LEU LYS GLY LEU PHE CYS ALA GLY GLU ALA SEQRES 34 A 722 ALA CYS TRP ASP LEU HIS GLY PHE ASN ARG LEU GLY GLY SEQRES 35 A 722 ASN SER VAL SER GLU ALA VAL VAL ALA GLY MET ILE ILE SEQRES 36 A 722 GLY ASP TYR PHE ALA SER HIS CYS LEU GLU ALA GLN ILE SEQRES 37 A 722 GLU ILE ASN THR GLN LYS VAL GLU ALA PHE ILE LYS GLU SEQRES 38 A 722 SER GLN ASP TYR MET HIS PHE LEU LEU HIS ASN GLU GLY SEQRES 39 A 722 LYS GLU ASP VAL TYR GLU ILE ARG GLU ARG MET LYS GLU SEQRES 40 A 722 VAL MET ASP GLU LYS VAL GLY VAL PHE ARG GLU GLY LYS SEQRES 41 A 722 LYS LEU GLU GLU ALA LEU LYS GLU LEU GLN GLU LEU TYR SEQRES 42 A 722 ALA ARG SER LYS ASN ILE CYS VAL LYS ASN LYS VAL LEU SEQRES 43 A 722 HIS ASN ASN PRO GLU LEU GLU ASP ALA TYR ARG THR LYS SEQRES 44 A 722 LYS MET LEU LYS LEU ALA LEU CYS ILE THR GLN GLY ALA SEQRES 45 A 722 LEU LEU ARG THR GLU SER ARG GLY ALA HIS THR ARG ILE SEQRES 46 A 722 ASP TYR PRO LYS ARG ASP ASP GLU LYS TRP LEU ASN ARG SEQRES 47 A 722 THR LEU ALA SER TRP PRO SER THR GLU GLN ASP MET PRO SEQRES 48 A 722 THR ILE GLU TYR GLU GLU LEU ASP VAL MET LYS MET GLU SEQRES 49 A 722 ILE SER PRO ASP PHE ARG GLY TYR GLY LYS LYS GLY ASN SEQRES 50 A 722 PHE ILE PRO HIS PRO LYS LYS GLU GLU ARG ASP ALA GLU SEQRES 51 A 722 ILE LEU LYS THR ILE LEU GLU LEU GLU LYS LEU GLY LYS SEQRES 52 A 722 ASP ARG ILE GLU VAL GLN HIS ALA LEU MET PRO PHE GLU SEQRES 53 A 722 LEU GLN GLU LYS TYR LYS ALA ARG ASN MET ARG LEU GLU SEQRES 54 A 722 ASP GLU GLU VAL ARG ALA ARG GLY GLU HIS LEU TYR SER SEQRES 55 A 722 PHE ASN VAL HIS ASP LEU LEU ASP GLN HIS ASN ALA ASN SEQRES 56 A 722 LEU LYS GLY GLU HIS HIS GLU FORMUL 2 HOH *214(H2 O) HELIX 1 AA1 GLY A 14 LYS A 27 1 14 HELIX 2 AA2 ASN A 65 SER A 77 1 13 HELIX 3 AA3 ASP A 82 TRP A 103 1 22 HELIX 4 AA4 MET A 160 HIS A 171 1 12 HELIX 5 AA5 TYR A 219 TYR A 223 5 5 HELIX 6 AA6 GLY A 234 THR A 243 1 10 HELIX 7 AA7 PHE A 287 GLU A 292 1 6 HELIX 8 AA8 LYS A 295 ALA A 299 5 5 HELIX 9 AA9 SER A 300 LYS A 314 1 15 HELIX 10 AB1 ILE A 330 LEU A 333 5 4 HELIX 11 AB2 GLY A 334 LEU A 342 1 9 HELIX 12 AB3 LEU A 342 ALA A 353 1 12 HELIX 13 AB4 LYS A 365 GLN A 369 5 5 HELIX 14 AB5 GLU A 375 GLY A 379 5 5 HELIX 15 AB6 LEU A 432 SER A 436 5 5 HELIX 16 AB7 SER A 438 GLU A 457 1 20 HELIX 17 AB8 ASN A 463 HIS A 483 1 21 HELIX 18 AB9 ASP A 489 VAL A 505 1 17 HELIX 19 AC1 GLU A 510 LYS A 529 1 20 HELIX 20 AC2 ASN A 541 ARG A 567 1 27 HELIX 21 AC3 ASP A 611 MET A 615 5 5 HELIX 22 AC4 LYS A 635 LEU A 653 1 19 HELIX 23 AC5 ASP A 656 MET A 665 1 10 HELIX 24 AC6 GLN A 670 ALA A 675 1 6 HELIX 25 AC7 GLU A 681 ARG A 688 1 8 HELIX 26 AC8 LEU A 692 VAL A 697 1 6 HELIX 27 AC9 HIS A 698 ASN A 707 1 10 SHEET 1 AA1 6 ASP A 174 GLN A 176 0 SHEET 2 AA1 6 THR A 31 LEU A 34 1 N VAL A 33 O GLN A 176 SHEET 3 AA1 6 ILE A 3 ILE A 11 1 N ILE A 10 O LEU A 34 SHEET 4 AA1 6 ILE A 204 LEU A 214 1 O VAL A 208 N THR A 4 SHEET 5 AA1 6 LYS A 190 ASP A 198 -1 N VAL A 196 O SER A 205 SHEET 6 AA1 6 LYS A 179 HIS A 187 -1 N ASP A 180 O ARG A 197 SHEET 1 AA2 5 ASP A 174 GLN A 176 0 SHEET 2 AA2 5 THR A 31 LEU A 34 1 N VAL A 33 O GLN A 176 SHEET 3 AA2 5 ILE A 3 ILE A 11 1 N ILE A 10 O LEU A 34 SHEET 4 AA2 5 ILE A 204 LEU A 214 1 O VAL A 208 N THR A 4 SHEET 5 AA2 5 LEU A 415 CYS A 417 1 O PHE A 416 N THR A 212 SHEET 1 AA3 5 ALA A 422 CYS A 423 0 SHEET 2 AA3 5 GLY A 401 ARG A 403 1 N VAL A 402 O CYS A 423 SHEET 3 AA3 5 LEU A 248 GLY A 249 -1 N GLY A 249 O GLY A 401 SHEET 4 AA3 5 ASN A 589 SER A 594 -1 O ALA A 593 N LEU A 248 SHEET 5 AA3 5 THR A 604 GLU A 609 -1 O GLU A 606 N LEU A 592 SHEET 1 AA4 4 VAL A 254 LEU A 261 0 SHEET 2 AA4 4 ILE A 389 SER A 398 -1 O HIS A 396 N GLN A 255 SHEET 3 AA4 4 VAL A 326 ASP A 329 -1 N VAL A 326 O ILE A 391 SHEET 4 AA4 4 VAL A 278 ARG A 280 -1 N VAL A 278 O ASP A 329 SHEET 1 AA5 2 GLU A 362 THR A 364 0 SHEET 2 AA5 2 LYS A 384 GLN A 385 -1 O LYS A 384 N GLN A 363 SHEET 1 AA6 2 ARG A 582 ASP A 583 0 SHEET 2 AA6 2 PHE A 630 ILE A 631 1 O ILE A 631 N ARG A 582 CISPEP 1 VAL A 262 PRO A 263 0 -0.96 CISPEP 2 TRP A 424 ASP A 425 0 10.68 CRYST1 63.890 63.890 354.530 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002821 0.00000