data_6N5P # _entry.id 6N5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6N5P pdb_00006n5p 10.2210/pdb6n5p/pdb WWPDB D_1000238226 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6N5K unspecified PDB . 6N5L unspecified PDB . 6N5N unspecified PDB . 6N5O unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6N5P _pdbx_database_status.recvd_initial_deposition_date 2018-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shoffner, G.M.' 1 0000-0001-5479-4203 'Peng, Z.' 2 0000-0001-7666-1276 'Guo, F.' 3 0000-0002-6245-1486 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shoffner, G.M.' 1 0000-0001-5479-4203 primary 'Peng, Z.' 2 0000-0001-7666-1276 primary 'Guo, F.' 3 0000-0002-6245-1486 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6N5P _cell.details ? _cell.formula_units_Z ? _cell.length_a 114.800 _cell.length_a_esd ? _cell.length_b 114.800 _cell.length_b_esd ? _cell.length_c 115.570 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (127-MER)' 41183.305 1 ? ? ? ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCAUGUCGUUUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAU ACCUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCAUGUCGUUUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCU UCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 A n 1 15 U n 1 16 G n 1 17 U n 1 18 C n 1 19 G n 1 20 U n 1 21 U n 1 22 U n 1 23 G n 1 24 G n 1 25 U n 1 26 A n 1 27 C n 1 28 G n 1 29 G n 1 30 A n 1 31 G n 1 32 G n 1 33 A n 1 34 A n 1 35 C n 1 36 C n 1 37 G n 1 38 C n 1 39 U n 1 40 U n 1 41 U n 1 42 U n 1 43 U n 1 44 G n 1 45 G n 1 46 G n 1 47 G n 1 48 U n 1 49 U n 1 50 A n 1 51 A n 1 52 U n 1 53 C n 1 54 U n 1 55 G n 1 56 C n 1 57 A n 1 58 G n 1 59 U n 1 60 G n 1 61 A n 1 62 A n 1 63 G n 1 64 C n 1 65 U n 1 66 G n 1 67 C n 1 68 A n 1 69 G n 1 70 U n 1 71 A n 1 72 G n 1 73 G n 1 74 G n 1 75 A n 1 76 U n 1 77 A n 1 78 C n 1 79 C n 1 80 U n 1 81 U n 1 82 C n 1 83 U n 1 84 G n 1 85 U n 1 86 C n 1 87 C n 1 88 C n 1 89 G n 1 90 C n 1 91 A n 1 92 C n 1 93 C n 1 94 C n 1 95 G n 1 96 A n 1 97 C n 1 98 A n 1 99 G n 1 100 C n 1 101 U n 1 102 A n 1 103 A n 1 104 C n 1 105 U n 1 106 C n 1 107 C n 1 108 G n 1 109 G n 1 110 A n 1 111 G n 1 112 G n 1 113 C n 1 114 A n 1 115 A n 1 116 U n 1 117 A n 1 118 A n 1 119 A n 1 120 G n 1 121 G n 1 122 A n 1 123 A n 1 124 G n 1 125 G n 1 126 A n 1 127 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 127 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6N5P _struct_ref.pdbx_db_accession 6N5P _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6N5P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6N5P _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 127 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6N5P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details 'Room Temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.89 M (NH4)2SO4, 0.214 M Li2SO4, and 0.1 M HEPES pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Water-cooled flat double Si(111) Khozu monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.116 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.116 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6N5P _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.991 _reflns.d_resolution_low 75.369 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18192 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 38.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.101 _reflns.pdbx_Rpim_I_all 0.016 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.991 _reflns_shell.d_res_low 3.10 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1819 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 35.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.02 _reflns_shell.pdbx_Rpim_I_all 0.324 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.848 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 401.540 _refine.B_iso_mean 113.5714 _refine.B_iso_min 24.290 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6N5P _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9910 _refine.ls_d_res_low 75.3690 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18192 _refine.ls_number_reflns_R_free 1818 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8700 _refine.ls_percent_reflns_R_free 9.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1543 _refine.ls_R_factor_R_free 0.1806 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1514 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4QK8 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.9100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.9910 _refine_hist.d_res_low 75.3690 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2824 _refine_hist.pdbx_number_residues_total 127 _refine_hist.pdbx_B_iso_mean_ligand 70.46 _refine_hist.pdbx_B_iso_mean_solvent 54.63 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2722 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 3148 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.059 ? 4905 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.046 ? 650 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 131 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.034 ? 1565 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9910 3.0719 1395 . 140 1255 100.0000 . . . 0.4112 0.0000 0.3841 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.0719 3.1623 1354 . 135 1219 100.0000 . . . 0.2723 0.0000 0.2835 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.1623 3.2644 1397 . 140 1257 100.0000 . . . 0.2577 0.0000 0.2200 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.2644 3.3811 1390 . 138 1252 100.0000 . . . 0.2505 0.0000 0.1873 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.3811 3.5164 1338 . 134 1204 100.0000 . . . 0.2185 0.0000 0.1744 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.5164 3.6765 1397 . 140 1257 100.0000 . . . 0.2015 0.0000 0.1746 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.6765 3.8703 1388 . 139 1249 100.0000 . . . 0.1669 0.0000 0.1558 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.8703 4.1128 1395 . 139 1256 100.0000 . . . 0.1990 0.0000 0.1462 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.1128 4.4303 1400 . 140 1260 100.0000 . . . 0.1519 0.0000 0.1314 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.4303 4.8760 1386 . 139 1247 100.0000 . . . 0.1601 0.0000 0.1294 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.8760 5.5814 1420 . 142 1278 100.0000 . . . 0.1625 0.0000 0.1288 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 5.5814 7.0312 1427 . 143 1284 100.0000 . . . 0.1761 0.0000 0.1390 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 7.0312 75.3929 1505 . 149 1356 100.0000 . . . 0.1523 0.0000 0.1335 . . . . . . 13 . . . # _struct.entry_id 6N5P _struct.title 'Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6N5P _struct_keywords.text 'microRNA, RNA processing, Protein-RNA interaction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 5 ? J N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.559 ? ? metalc1 metalc ? ? A A 30 OP1 ? ? ? 1_555 E MG . MG ? ? A A 30 A MG 204 1_555 ? ? ? ? ? ? ? 2.944 ? ? metalc2 metalc ? ? A G 32 OP2 ? ? ? 1_555 D MG . MG ? ? A G 32 A MG 203 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc3 metalc ? ? A A 75 OP1 ? ? ? 1_555 H MG . MG ? ? A A 75 A MG 207 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc4 metalc ? ? A G 99 OP1 ? ? ? 1_555 D MG . MG ? ? A G 99 A MG 203 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc5 metalc ? ? A G 99 OP2 ? ? ? 1_555 G MG . MG ? ? A G 99 A MG 206 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc6 metalc ? ? A C 100 OP2 ? ? ? 1_555 D MG . MG ? ? A C 100 A MG 203 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc7 metalc ? ? A U 101 O4 ? ? ? 1_555 D MG . MG ? ? A U 101 A MG 203 1_555 ? ? ? ? ? ? ? 2.108 ? ? hydrog1 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 114 N1 ? ? A U 4 A A 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 114 N6 ? ? A U 4 A A 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 113 N3 ? ? A G 5 A C 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 113 O2 ? ? A G 5 A C 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 113 N4 ? ? A G 5 A C 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 112 N1 ? ? A C 6 A G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 112 O6 ? ? A C 6 A G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 112 N2 ? ? A C 6 A G 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 111 N1 ? ? A C 7 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 111 O6 ? ? A C 7 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 111 N2 ? ? A C 7 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 110 N7 ? ? A G 8 A A 110 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 110 N6 ? ? A G 8 A A 110 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 108 N2 ? ? A A 9 A G 108 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 25 O2 ? ? A U 11 A U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 25 N3 ? ? A U 11 A U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 12 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 12 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 12 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 13 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 13 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 13 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 14 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 14 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 15 N3 ? ? ? 1_555 A U 21 O4 ? ? A U 15 A U 21 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog26 hydrog ? ? A U 15 O2 ? ? ? 1_555 A U 21 N3 ? ? A U 15 A U 21 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog27 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 109 N3 ? ? A A 26 A G 109 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A A 26 N7 ? ? ? 1_555 A G 109 N2 ? ? A A 26 A G 109 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 108 N1 ? ? A C 27 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 108 O6 ? ? A C 27 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 108 N2 ? ? A C 27 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 107 N3 ? ? A G 28 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 107 O2 ? ? A G 28 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 107 N4 ? ? A G 28 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 106 N3 ? ? A G 29 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 106 O2 ? ? A G 29 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 106 N4 ? ? A G 29 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 105 N3 ? ? A A 30 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 105 O4 ? ? A A 30 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 31 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 31 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 31 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 32 N2 ? ? ? 1_555 A A 103 N7 ? ? A G 32 A A 103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A G 32 N3 ? ? ? 1_555 A A 103 N6 ? ? A G 32 A A 103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A C 35 N4 ? ? ? 1_555 A C 100 O2 ? ? A C 35 A C 100 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog46 hydrog ? ? A C 36 N3 ? ? ? 1_555 A G 99 N1 ? ? A C 36 A G 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 36 N4 ? ? ? 1_555 A G 99 O6 ? ? A C 36 A G 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 36 O2 ? ? ? 1_555 A G 99 N2 ? ? A C 36 A G 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 96 N1 ? ? A U 42 A A 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 96 N6 ? ? A U 42 A A 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 44 O6 ? ? ? 1_555 A G 95 N2 ? ? A G 44 A G 95 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 97 N3 ? ? A G 44 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 97 O2 ? ? A G 44 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 97 N4 ? ? A G 44 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 94 N3 ? ? A G 45 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 94 O2 ? ? A G 45 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 45 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 45 N2 ? ? ? 1_555 A A 98 N1 ? ? A G 45 A A 98 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 46 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 46 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 46 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 46 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 47 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 47 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 47 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 48 N3 ? ? ? 1_555 A A 91 N1 ? ? A U 48 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 48 O4 ? ? ? 1_555 A A 91 N6 ? ? A U 48 A A 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 49 O2 ? ? ? 1_555 A C 90 N4 ? ? A U 49 A C 90 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog68 hydrog ? ? A A 50 N3 ? ? ? 1_555 A G 72 N2 ? ? A A 50 A G 72 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A U 52 N3 ? ? ? 1_555 A U 70 O2 ? ? A U 52 A U 70 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog70 hydrog ? ? A U 52 O4 ? ? ? 1_555 A U 70 N3 ? ? A U 52 A U 70 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog71 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 53 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 53 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 53 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 54 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 54 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 54 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 54 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 55 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 55 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 55 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 55 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 55 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 55 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 56 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 56 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 56 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 57 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 57 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 64 O2 ? ? A G 58 A C 64 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog85 hydrog ? ? A U 59 O2 ? ? ? 1_555 A C 64 N4 ? ? A U 59 A C 64 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog86 hydrog ? ? A A 71 N6 ? ? ? 1_555 A G 89 N3 ? ? A A 71 A G 89 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog87 hydrog ? ? A A 71 N7 ? ? ? 1_555 A G 89 N2 ? ? A A 71 A G 89 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog88 hydrog ? ? A G 72 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 72 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 72 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 72 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 72 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 72 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 73 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 73 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 73 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 74 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 74 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 74 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 74 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 74 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 74 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 75 N1 ? ? ? 1_555 A U 85 N3 ? ? A A 75 A U 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A A 75 N6 ? ? ? 1_555 A U 85 O4 ? ? A A 75 A U 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A U 76 N3 ? ? ? 1_555 A G 84 O6 ? ? A U 76 A G 84 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog100 hydrog ? ? A U 76 O2 ? ? ? 1_555 A G 84 N1 ? ? A U 76 A G 84 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog101 hydrog ? ? A C 78 N3 ? ? ? 1_555 A G 125 N1 ? ? A C 78 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 78 N4 ? ? ? 1_555 A G 125 O6 ? ? A C 78 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 78 O2 ? ? ? 1_555 A G 125 N2 ? ? A C 78 A G 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 79 N3 ? ? ? 1_555 A G 124 N1 ? ? A C 79 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 79 N4 ? ? ? 1_555 A G 124 O6 ? ? A C 79 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A C 79 O2 ? ? ? 1_555 A G 124 N2 ? ? A C 79 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A U 80 N3 ? ? ? 1_555 A A 123 N1 ? ? A U 80 A A 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A U 80 O4 ? ? ? 1_555 A A 123 N6 ? ? A U 80 A A 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A U 81 N3 ? ? ? 1_555 A A 122 N1 ? ? A U 81 A A 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A U 81 O4 ? ? ? 1_555 A A 122 N6 ? ? A U 81 A A 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 82 N3 ? ? ? 1_555 A G 121 N1 ? ? A C 82 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 82 N4 ? ? ? 1_555 A G 121 O6 ? ? A C 82 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 82 O2 ? ? ? 1_555 A G 121 N2 ? ? A C 82 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A U 83 N3 ? ? ? 1_555 A G 120 O6 ? ? A U 83 A G 120 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog115 hydrog ? ? A U 83 O2 ? ? ? 1_555 A G 120 N1 ? ? A U 83 A G 120 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog116 hydrog ? ? A G 84 N2 ? ? ? 1_555 A A 118 N3 ? ? A G 84 A A 118 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog117 hydrog ? ? A C 94 O2 ? ? ? 1_555 A A 98 N6 ? ? A C 94 A A 98 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog118 hydrog ? ? A G 95 N3 ? ? ? 1_555 A C 97 N4 ? ? A G 95 A C 97 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BA 201 ? 15 'binding site for residue 2BA A 201' AC2 Software A 2BA 202 ? 14 'binding site for residue 2BA A 202' AC3 Software A MG 203 ? 5 'binding site for residue MG A 203' AC4 Software A MG 204 ? 2 'binding site for residue MG A 204' AC5 Software A K 205 ? 1 'binding site for residue K A 205' AC6 Software A MG 206 ? 1 'binding site for residue MG A 206' AC7 Software A MG 207 ? 4 'binding site for residue MG A 207' AC8 Software A SO4 208 ? 3 'binding site for residue SO4 A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 15 C A 6 ? C A 6 . ? 1_555 ? 3 AC1 15 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 15 G A 8 ? G A 8 . ? 1_555 ? 5 AC1 15 A A 50 ? A A 50 . ? 1_555 ? 6 AC1 15 G A 73 ? G A 73 . ? 1_555 ? 7 AC1 15 G A 74 ? G A 74 . ? 1_555 ? 8 AC1 15 A A 75 ? A A 75 . ? 1_555 ? 9 AC1 15 U A 76 ? U A 76 . ? 1_555 ? 10 AC1 15 A A 77 ? A A 77 . ? 1_555 ? 11 AC1 15 C A 87 ? C A 87 . ? 1_555 ? 12 AC1 15 C A 88 ? C A 88 . ? 1_555 ? 13 AC1 15 G A 112 ? G A 112 . ? 1_555 ? 14 AC1 15 C A 113 ? C A 113 . ? 1_555 ? 15 AC1 15 A A 114 ? A A 114 . ? 1_555 ? 16 AC2 14 A A 9 ? A A 9 . ? 1_555 ? 17 AC2 14 G A 28 ? G A 28 . ? 1_555 ? 18 AC2 14 G A 29 ? G A 29 . ? 1_555 ? 19 AC2 14 A A 30 ? A A 30 . ? 1_555 ? 20 AC2 14 G A 31 ? G A 31 . ? 1_555 ? 21 AC2 14 G A 46 ? G A 46 . ? 1_555 ? 22 AC2 14 G A 47 ? G A 47 . ? 1_555 ? 23 AC2 14 U A 48 ? U A 48 . ? 1_555 ? 24 AC2 14 U A 49 ? U A 49 . ? 1_555 ? 25 AC2 14 C A 93 ? C A 93 . ? 1_555 ? 26 AC2 14 C A 94 ? C A 94 . ? 1_555 ? 27 AC2 14 A A 98 ? A A 98 . ? 1_555 ? 28 AC2 14 C A 107 ? C A 107 . ? 1_555 ? 29 AC2 14 G A 108 ? G A 108 . ? 1_555 ? 30 AC3 5 G A 32 ? G A 32 . ? 1_555 ? 31 AC3 5 A A 98 ? A A 98 . ? 1_555 ? 32 AC3 5 G A 99 ? G A 99 . ? 1_555 ? 33 AC3 5 C A 100 ? C A 100 . ? 1_555 ? 34 AC3 5 U A 101 ? U A 101 . ? 1_555 ? 35 AC4 2 A A 30 ? A A 30 . ? 1_555 ? 36 AC4 2 U A 48 ? U A 48 . ? 1_555 ? 37 AC5 1 GTP A 1 ? GTP A 1 . ? 1_555 ? 38 AC6 1 G A 99 ? G A 99 . ? 1_555 ? 39 AC7 4 C A 7 ? C A 7 . ? 1_555 ? 40 AC7 4 G A 8 ? G A 8 . ? 1_555 ? 41 AC7 4 G A 74 ? G A 74 . ? 1_555 ? 42 AC7 4 A A 75 ? A A 75 . ? 1_555 ? 43 AC8 3 A A 34 ? A A 34 . ? 1_555 ? 44 AC8 3 C A 100 ? C A 100 . ? 1_555 ? 45 AC8 3 U A 101 ? U A 101 . ? 1_555 ? # _atom_sites.entry_id 6N5P _atom_sites.fract_transf_matrix[1][1] 0.008711 _atom_sites.fract_transf_matrix[1][2] 0.005029 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010058 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008653 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 C 38 38 38 C C A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 U 42 42 42 U U A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 G 47 47 47 G G A . n A 1 48 U 48 48 48 U U A . n A 1 49 U 49 49 49 U U A . n A 1 50 A 50 50 50 A A A . n A 1 51 A 51 51 51 A A A . n A 1 52 U 52 52 52 U U A . n A 1 53 C 53 53 53 C C A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 C 56 56 56 C C A . n A 1 57 A 57 57 57 A A A . n A 1 58 G 58 58 58 G G A . n A 1 59 U 59 59 59 U U A . n A 1 60 G 60 60 60 G G A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 U 65 65 65 U U A . n A 1 66 G 66 66 66 G G A . n A 1 67 C 67 67 67 C C A . n A 1 68 A 68 68 68 A A A . n A 1 69 G 69 69 69 G G A . n A 1 70 U 70 70 70 U U A . n A 1 71 A 71 71 71 A A A . n A 1 72 G 72 72 72 G G A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 U 76 76 76 U U A . n A 1 77 A 77 77 77 A A A . n A 1 78 C 78 78 78 C C A . n A 1 79 C 79 79 79 C C A . n A 1 80 U 80 80 80 U U A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n A 1 83 U 83 83 83 U U A . n A 1 84 G 84 84 84 G G A . n A 1 85 U 85 85 85 U U A . n A 1 86 C 86 86 86 C C A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 G 89 89 89 G G A . n A 1 90 C 90 90 90 C C A . n A 1 91 A 91 91 91 A A A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 C 94 94 94 C C A . n A 1 95 G 95 95 95 G G A . n A 1 96 A 96 96 96 A A A . n A 1 97 C 97 97 97 C C A . n A 1 98 A 98 98 98 A A A . n A 1 99 G 99 99 99 G G A . n A 1 100 C 100 100 100 C C A . n A 1 101 U 101 101 101 U U A . n A 1 102 A 102 102 102 A A A . n A 1 103 A 103 103 103 A A A . n A 1 104 C 104 104 104 C C A . n A 1 105 U 105 105 105 U U A . n A 1 106 C 106 106 106 C C A . n A 1 107 C 107 107 107 C C A . n A 1 108 G 108 108 108 G G A . n A 1 109 G 109 109 109 G G A . n A 1 110 A 110 110 110 A A A . n A 1 111 G 111 111 111 G G A . n A 1 112 G 112 112 112 G G A . n A 1 113 C 113 113 113 C C A . n A 1 114 A 114 114 114 A A A . n A 1 115 A 115 115 115 A A A . n A 1 116 U 116 116 116 U U A . n A 1 117 A 117 117 117 A A A . n A 1 118 A 118 118 118 A A A . n A 1 119 A 119 119 119 A A A . n A 1 120 G 120 120 120 G G A . n A 1 121 G 121 121 121 G G A . n A 1 122 A 122 122 122 A A A . n A 1 123 A 123 123 123 A A A . n A 1 124 G 124 124 124 G G A . n A 1 125 G 125 125 125 G G A . n A 1 126 A 126 126 126 A A A . n A 1 127 G 127 127 127 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA 1 201 201 2BA 2BA A . C 2 2BA 1 202 202 2BA 2BA A . D 3 MG 1 203 203 MG MG A . E 3 MG 1 204 204 MG MG A . F 4 K 1 205 205 K K A . G 3 MG 1 206 206 MG MG A . H 3 MG 1 207 207 MG MG A . I 5 SO4 1 208 208 SO4 SO4 A . J 6 HOH 1 301 403 HOH HOH A . J 6 HOH 2 302 401 HOH HOH A . J 6 HOH 3 303 402 HOH HOH A . J 6 HOH 4 304 404 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 32 ? A G 32 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A G 99 ? A G 99 ? 1_555 78.0 ? 2 OP2 ? A G 32 ? A G 32 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 100 ? A C 100 ? 1_555 152.5 ? 3 OP1 ? A G 99 ? A G 99 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 100 ? A C 100 ? 1_555 75.0 ? 4 OP2 ? A G 32 ? A G 32 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 101 ? A U 101 ? 1_555 84.5 ? 5 OP1 ? A G 99 ? A G 99 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 101 ? A U 101 ? 1_555 79.4 ? 6 OP2 ? A C 100 ? A C 100 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 101 ? A U 101 ? 1_555 85.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -59.6137 13.5613 -32.5030 0.8217 0.6295 0.7219 -0.0255 0.0452 0.0332 1.9914 1.5762 3.8165 0.5158 1.2926 1.2302 0.2526 -0.1100 -0.1056 -0.1331 0.1377 -0.1576 -0.5406 -0.1271 -0.3346 'X-RAY DIFFRACTION' 2 ? refined -76.0386 19.6658 -16.0081 1.5821 1.9454 2.3376 0.5560 0.1147 -0.1187 5.8249 8.5380 6.9119 -1.2248 2.4441 -3.6746 -1.4478 0.9634 0.4663 -0.5512 1.9668 2.9451 1.0722 -2.9511 -2.6336 'X-RAY DIFFRACTION' 3 ? refined -39.8737 17.8003 -13.0148 0.6615 0.7706 0.8881 -0.1172 0.1240 -0.0805 1.8204 3.4544 2.5073 1.2494 -0.7072 -0.8317 0.1725 -0.0639 -0.1108 -0.0504 0.1763 -0.6483 0.1445 -0.0883 0.7515 'X-RAY DIFFRACTION' 4 ? refined -33.8694 34.4344 -31.8114 2.0290 1.4338 1.7415 -0.6697 -0.0262 -0.0120 4.4118 3.4722 1.6668 -0.3987 0.1011 0.3722 -0.1259 -0.2050 0.2886 -0.3439 1.6424 -1.4725 -0.4284 -2.2895 1.4911 'X-RAY DIFFRACTION' 5 ? refined -48.8563 14.2289 -31.3687 0.6055 0.6067 0.7087 -0.0013 0.1067 0.0268 0.7182 1.9181 2.3911 -0.4177 -0.0725 0.3189 0.1919 -0.2740 0.0799 0.1788 0.1205 -0.1650 -0.3528 -0.1202 0.2375 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 11 ;chain 'A' and (resid 2 through 11 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 12 A 24 ;chain 'A' and (resid 12 through 24 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 25 A 54 ;chain 'A' and (resid 25 through 54 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 55 A 74 ;chain 'A' and (resid 55 through 74 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 75 A 126 ;chain 'A' and (resid 75 through 126 ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A GTP 1 ? ? "O3'" A GTP 1 ? ? P A G 2 ? ? 112.22 119.70 -7.48 1.20 Y 2 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 117.69 110.50 7.19 1.10 Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BA P P N R 1 2BA O1P O N N 2 2BA O2P O N N 3 2BA "O5'" O N N 4 2BA "C5'" C N N 5 2BA "C4'" C N R 6 2BA "O4'" O N N 7 2BA "C3'" C N S 8 2BA "O3'" O N N 9 2BA "C2'" C N R 10 2BA "O2'" O N N 11 2BA "C1'" C N R 12 2BA N9 N Y N 13 2BA C8 C Y N 14 2BA N7 N Y N 15 2BA C5 C Y N 16 2BA C6 C Y N 17 2BA N6 N N N 18 2BA N1 N Y N 19 2BA C2 C Y N 20 2BA N3 N Y N 21 2BA C4 C Y N 22 2BA P1 P N R 23 2BA O1P1 O N N 24 2BA O2P1 O N N 25 2BA "O5'1" O N N 26 2BA "C5'1" C N N 27 2BA "C4'1" C N R 28 2BA "O4'1" O N N 29 2BA "C3'1" C N S 30 2BA "O3'1" O N N 31 2BA "C2'1" C N R 32 2BA "O2'1" O N N 33 2BA "C1'1" C N R 34 2BA N91 N Y N 35 2BA C81 C Y N 36 2BA N71 N Y N 37 2BA C51 C Y N 38 2BA C61 C Y N 39 2BA N61 N N N 40 2BA N11 N Y N 41 2BA C21 C Y N 42 2BA N31 N Y N 43 2BA C41 C Y N 44 2BA "H5'" H N N 45 2BA "H5'A" H N N 46 2BA "H4'" H N N 47 2BA "H3'" H N N 48 2BA "H2'" H N N 49 2BA "HO2'" H N N 50 2BA "H1'" H N N 51 2BA H8 H N N 52 2BA HN6 H N N 53 2BA HN6A H N N 54 2BA H2 H N N 55 2BA "HC5'" H N N 56 2BA HC5A H N N 57 2BA "HC4'" H N N 58 2BA "HC3'" H N N 59 2BA "HC2'" H N N 60 2BA HO2A H N N 61 2BA "HC1'" H N N 62 2BA HC8 H N N 63 2BA H1N6 H N N 64 2BA H1NA H N N 65 2BA HC2 H N N 66 2BA H2P H N N 67 2BA H2OP H N N 68 A OP3 O N N 69 A P P N N 70 A OP1 O N N 71 A OP2 O N N 72 A "O5'" O N N 73 A "C5'" C N N 74 A "C4'" C N R 75 A "O4'" O N N 76 A "C3'" C N S 77 A "O3'" O N N 78 A "C2'" C N R 79 A "O2'" O N N 80 A "C1'" C N R 81 A N9 N Y N 82 A C8 C Y N 83 A N7 N Y N 84 A C5 C Y N 85 A C6 C Y N 86 A N6 N N N 87 A N1 N Y N 88 A C2 C Y N 89 A N3 N Y N 90 A C4 C Y N 91 A HOP3 H N N 92 A HOP2 H N N 93 A "H5'" H N N 94 A "H5''" H N N 95 A "H4'" H N N 96 A "H3'" H N N 97 A "HO3'" H N N 98 A "H2'" H N N 99 A "HO2'" H N N 100 A "H1'" H N N 101 A H8 H N N 102 A H61 H N N 103 A H62 H N N 104 A H2 H N N 105 C OP3 O N N 106 C P P N N 107 C OP1 O N N 108 C OP2 O N N 109 C "O5'" O N N 110 C "C5'" C N N 111 C "C4'" C N R 112 C "O4'" O N N 113 C "C3'" C N S 114 C "O3'" O N N 115 C "C2'" C N R 116 C "O2'" O N N 117 C "C1'" C N R 118 C N1 N N N 119 C C2 C N N 120 C O2 O N N 121 C N3 N N N 122 C C4 C N N 123 C N4 N N N 124 C C5 C N N 125 C C6 C N N 126 C HOP3 H N N 127 C HOP2 H N N 128 C "H5'" H N N 129 C "H5''" H N N 130 C "H4'" H N N 131 C "H3'" H N N 132 C "HO3'" H N N 133 C "H2'" H N N 134 C "HO2'" H N N 135 C "H1'" H N N 136 C H41 H N N 137 C H42 H N N 138 C H5 H N N 139 C H6 H N N 140 G OP3 O N N 141 G P P N N 142 G OP1 O N N 143 G OP2 O N N 144 G "O5'" O N N 145 G "C5'" C N N 146 G "C4'" C N R 147 G "O4'" O N N 148 G "C3'" C N S 149 G "O3'" O N N 150 G "C2'" C N R 151 G "O2'" O N N 152 G "C1'" C N R 153 G N9 N Y N 154 G C8 C Y N 155 G N7 N Y N 156 G C5 C Y N 157 G C6 C N N 158 G O6 O N N 159 G N1 N N N 160 G C2 C N N 161 G N2 N N N 162 G N3 N N N 163 G C4 C Y N 164 G HOP3 H N N 165 G HOP2 H N N 166 G "H5'" H N N 167 G "H5''" H N N 168 G "H4'" H N N 169 G "H3'" H N N 170 G "HO3'" H N N 171 G "H2'" H N N 172 G "HO2'" H N N 173 G "H1'" H N N 174 G H8 H N N 175 G H1 H N N 176 G H21 H N N 177 G H22 H N N 178 GTP PG P N N 179 GTP O1G O N N 180 GTP O2G O N N 181 GTP O3G O N N 182 GTP O3B O N N 183 GTP PB P N N 184 GTP O1B O N N 185 GTP O2B O N N 186 GTP O3A O N N 187 GTP PA P N N 188 GTP O1A O N N 189 GTP O2A O N N 190 GTP "O5'" O N N 191 GTP "C5'" C N N 192 GTP "C4'" C N R 193 GTP "O4'" O N N 194 GTP "C3'" C N S 195 GTP "O3'" O N N 196 GTP "C2'" C N R 197 GTP "O2'" O N N 198 GTP "C1'" C N R 199 GTP N9 N Y N 200 GTP C8 C Y N 201 GTP N7 N Y N 202 GTP C5 C Y N 203 GTP C6 C N N 204 GTP O6 O N N 205 GTP N1 N N N 206 GTP C2 C N N 207 GTP N2 N N N 208 GTP N3 N N N 209 GTP C4 C Y N 210 GTP HOG2 H N N 211 GTP HOG3 H N N 212 GTP HOB2 H N N 213 GTP HOA2 H N N 214 GTP "H5'" H N N 215 GTP "H5''" H N N 216 GTP "H4'" H N N 217 GTP "H3'" H N N 218 GTP "HO3'" H N N 219 GTP "H2'" H N N 220 GTP "HO2'" H N N 221 GTP "H1'" H N N 222 GTP H8 H N N 223 GTP HN1 H N N 224 GTP HN21 H N N 225 GTP HN22 H N N 226 HOH O O N N 227 HOH H1 H N N 228 HOH H2 H N N 229 K K K N N 230 MG MG MG N N 231 SO4 S S N N 232 SO4 O1 O N N 233 SO4 O2 O N N 234 SO4 O3 O N N 235 SO4 O4 O N N 236 U OP3 O N N 237 U P P N N 238 U OP1 O N N 239 U OP2 O N N 240 U "O5'" O N N 241 U "C5'" C N N 242 U "C4'" C N R 243 U "O4'" O N N 244 U "C3'" C N S 245 U "O3'" O N N 246 U "C2'" C N R 247 U "O2'" O N N 248 U "C1'" C N R 249 U N1 N N N 250 U C2 C N N 251 U O2 O N N 252 U N3 N N N 253 U C4 C N N 254 U O4 O N N 255 U C5 C N N 256 U C6 C N N 257 U HOP3 H N N 258 U HOP2 H N N 259 U "H5'" H N N 260 U "H5''" H N N 261 U "H4'" H N N 262 U "H3'" H N N 263 U "HO3'" H N N 264 U "H2'" H N N 265 U "HO2'" H N N 266 U "H1'" H N N 267 U H3 H N N 268 U H5 H N N 269 U H6 H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BA P O1P doub N N 1 2BA P O2P sing N N 2 2BA P "O5'" sing N N 3 2BA P "O3'1" sing N N 4 2BA "O5'" "C5'" sing N N 5 2BA "C5'" "C4'" sing N N 6 2BA "C4'" "O4'" sing N N 7 2BA "C4'" "C3'" sing N N 8 2BA "O4'" "C1'" sing N N 9 2BA "C3'" "O3'" sing N N 10 2BA "C3'" "C2'" sing N N 11 2BA "O3'" P1 sing N N 12 2BA "C2'" "O2'" sing N N 13 2BA "C2'" "C1'" sing N N 14 2BA "C1'" N9 sing N N 15 2BA N9 C8 sing Y N 16 2BA N9 C4 sing Y N 17 2BA C8 N7 doub Y N 18 2BA N7 C5 sing Y N 19 2BA C5 C6 doub Y N 20 2BA C5 C4 sing Y N 21 2BA C6 N6 sing N N 22 2BA C6 N1 sing Y N 23 2BA N1 C2 doub Y N 24 2BA C2 N3 sing Y N 25 2BA N3 C4 doub Y N 26 2BA P1 O1P1 doub N N 27 2BA P1 O2P1 sing N N 28 2BA P1 "O5'1" sing N N 29 2BA "O5'1" "C5'1" sing N N 30 2BA "C5'1" "C4'1" sing N N 31 2BA "C4'1" "O4'1" sing N N 32 2BA "C4'1" "C3'1" sing N N 33 2BA "O4'1" "C1'1" sing N N 34 2BA "C3'1" "O3'1" sing N N 35 2BA "C3'1" "C2'1" sing N N 36 2BA "C2'1" "O2'1" sing N N 37 2BA "C2'1" "C1'1" sing N N 38 2BA "C1'1" N91 sing N N 39 2BA N91 C81 sing Y N 40 2BA N91 C41 sing Y N 41 2BA C81 N71 doub Y N 42 2BA N71 C51 sing Y N 43 2BA C51 C61 doub Y N 44 2BA C51 C41 sing Y N 45 2BA C61 N61 sing N N 46 2BA C61 N11 sing Y N 47 2BA N11 C21 doub Y N 48 2BA C21 N31 sing Y N 49 2BA N31 C41 doub Y N 50 2BA "C5'" "H5'" sing N N 51 2BA "C5'" "H5'A" sing N N 52 2BA "C4'" "H4'" sing N N 53 2BA "C3'" "H3'" sing N N 54 2BA "C2'" "H2'" sing N N 55 2BA "O2'" "HO2'" sing N N 56 2BA "C1'" "H1'" sing N N 57 2BA C8 H8 sing N N 58 2BA N6 HN6 sing N N 59 2BA N6 HN6A sing N N 60 2BA C2 H2 sing N N 61 2BA "C5'1" "HC5'" sing N N 62 2BA "C5'1" HC5A sing N N 63 2BA "C4'1" "HC4'" sing N N 64 2BA "C3'1" "HC3'" sing N N 65 2BA "C2'1" "HC2'" sing N N 66 2BA "O2'1" HO2A sing N N 67 2BA "C1'1" "HC1'" sing N N 68 2BA C81 HC8 sing N N 69 2BA N61 H1N6 sing N N 70 2BA N61 H1NA sing N N 71 2BA C21 HC2 sing N N 72 2BA O2P H2P sing N N 73 2BA O2P1 H2OP sing N N 74 A OP3 P sing N N 75 A OP3 HOP3 sing N N 76 A P OP1 doub N N 77 A P OP2 sing N N 78 A P "O5'" sing N N 79 A OP2 HOP2 sing N N 80 A "O5'" "C5'" sing N N 81 A "C5'" "C4'" sing N N 82 A "C5'" "H5'" sing N N 83 A "C5'" "H5''" sing N N 84 A "C4'" "O4'" sing N N 85 A "C4'" "C3'" sing N N 86 A "C4'" "H4'" sing N N 87 A "O4'" "C1'" sing N N 88 A "C3'" "O3'" sing N N 89 A "C3'" "C2'" sing N N 90 A "C3'" "H3'" sing N N 91 A "O3'" "HO3'" sing N N 92 A "C2'" "O2'" sing N N 93 A "C2'" "C1'" sing N N 94 A "C2'" "H2'" sing N N 95 A "O2'" "HO2'" sing N N 96 A "C1'" N9 sing N N 97 A "C1'" "H1'" sing N N 98 A N9 C8 sing Y N 99 A N9 C4 sing Y N 100 A C8 N7 doub Y N 101 A C8 H8 sing N N 102 A N7 C5 sing Y N 103 A C5 C6 sing Y N 104 A C5 C4 doub Y N 105 A C6 N6 sing N N 106 A C6 N1 doub Y N 107 A N6 H61 sing N N 108 A N6 H62 sing N N 109 A N1 C2 sing Y N 110 A C2 N3 doub Y N 111 A C2 H2 sing N N 112 A N3 C4 sing Y N 113 C OP3 P sing N N 114 C OP3 HOP3 sing N N 115 C P OP1 doub N N 116 C P OP2 sing N N 117 C P "O5'" sing N N 118 C OP2 HOP2 sing N N 119 C "O5'" "C5'" sing N N 120 C "C5'" "C4'" sing N N 121 C "C5'" "H5'" sing N N 122 C "C5'" "H5''" sing N N 123 C "C4'" "O4'" sing N N 124 C "C4'" "C3'" sing N N 125 C "C4'" "H4'" sing N N 126 C "O4'" "C1'" sing N N 127 C "C3'" "O3'" sing N N 128 C "C3'" "C2'" sing N N 129 C "C3'" "H3'" sing N N 130 C "O3'" "HO3'" sing N N 131 C "C2'" "O2'" sing N N 132 C "C2'" "C1'" sing N N 133 C "C2'" "H2'" sing N N 134 C "O2'" "HO2'" sing N N 135 C "C1'" N1 sing N N 136 C "C1'" "H1'" sing N N 137 C N1 C2 sing N N 138 C N1 C6 sing N N 139 C C2 O2 doub N N 140 C C2 N3 sing N N 141 C N3 C4 doub N N 142 C C4 N4 sing N N 143 C C4 C5 sing N N 144 C N4 H41 sing N N 145 C N4 H42 sing N N 146 C C5 C6 doub N N 147 C C5 H5 sing N N 148 C C6 H6 sing N N 149 G OP3 P sing N N 150 G OP3 HOP3 sing N N 151 G P OP1 doub N N 152 G P OP2 sing N N 153 G P "O5'" sing N N 154 G OP2 HOP2 sing N N 155 G "O5'" "C5'" sing N N 156 G "C5'" "C4'" sing N N 157 G "C5'" "H5'" sing N N 158 G "C5'" "H5''" sing N N 159 G "C4'" "O4'" sing N N 160 G "C4'" "C3'" sing N N 161 G "C4'" "H4'" sing N N 162 G "O4'" "C1'" sing N N 163 G "C3'" "O3'" sing N N 164 G "C3'" "C2'" sing N N 165 G "C3'" "H3'" sing N N 166 G "O3'" "HO3'" sing N N 167 G "C2'" "O2'" sing N N 168 G "C2'" "C1'" sing N N 169 G "C2'" "H2'" sing N N 170 G "O2'" "HO2'" sing N N 171 G "C1'" N9 sing N N 172 G "C1'" "H1'" sing N N 173 G N9 C8 sing Y N 174 G N9 C4 sing Y N 175 G C8 N7 doub Y N 176 G C8 H8 sing N N 177 G N7 C5 sing Y N 178 G C5 C6 sing N N 179 G C5 C4 doub Y N 180 G C6 O6 doub N N 181 G C6 N1 sing N N 182 G N1 C2 sing N N 183 G N1 H1 sing N N 184 G C2 N2 sing N N 185 G C2 N3 doub N N 186 G N2 H21 sing N N 187 G N2 H22 sing N N 188 G N3 C4 sing N N 189 GTP PG O1G doub N N 190 GTP PG O2G sing N N 191 GTP PG O3G sing N N 192 GTP PG O3B sing N N 193 GTP O2G HOG2 sing N N 194 GTP O3G HOG3 sing N N 195 GTP O3B PB sing N N 196 GTP PB O1B doub N N 197 GTP PB O2B sing N N 198 GTP PB O3A sing N N 199 GTP O2B HOB2 sing N N 200 GTP O3A PA sing N N 201 GTP PA O1A doub N N 202 GTP PA O2A sing N N 203 GTP PA "O5'" sing N N 204 GTP O2A HOA2 sing N N 205 GTP "O5'" "C5'" sing N N 206 GTP "C5'" "C4'" sing N N 207 GTP "C5'" "H5'" sing N N 208 GTP "C5'" "H5''" sing N N 209 GTP "C4'" "O4'" sing N N 210 GTP "C4'" "C3'" sing N N 211 GTP "C4'" "H4'" sing N N 212 GTP "O4'" "C1'" sing N N 213 GTP "C3'" "O3'" sing N N 214 GTP "C3'" "C2'" sing N N 215 GTP "C3'" "H3'" sing N N 216 GTP "O3'" "HO3'" sing N N 217 GTP "C2'" "O2'" sing N N 218 GTP "C2'" "C1'" sing N N 219 GTP "C2'" "H2'" sing N N 220 GTP "O2'" "HO2'" sing N N 221 GTP "C1'" N9 sing N N 222 GTP "C1'" "H1'" sing N N 223 GTP N9 C8 sing Y N 224 GTP N9 C4 sing Y N 225 GTP C8 N7 doub Y N 226 GTP C8 H8 sing N N 227 GTP N7 C5 sing Y N 228 GTP C5 C6 sing N N 229 GTP C5 C4 doub Y N 230 GTP C6 O6 doub N N 231 GTP C6 N1 sing N N 232 GTP N1 C2 sing N N 233 GTP N1 HN1 sing N N 234 GTP C2 N2 sing N N 235 GTP C2 N3 doub N N 236 GTP N2 HN21 sing N N 237 GTP N2 HN22 sing N N 238 GTP N3 C4 sing N N 239 HOH O H1 sing N N 240 HOH O H2 sing N N 241 SO4 S O1 doub N N 242 SO4 S O2 doub N N 243 SO4 S O3 sing N N 244 SO4 S O4 sing N N 245 U OP3 P sing N N 246 U OP3 HOP3 sing N N 247 U P OP1 doub N N 248 U P OP2 sing N N 249 U P "O5'" sing N N 250 U OP2 HOP2 sing N N 251 U "O5'" "C5'" sing N N 252 U "C5'" "C4'" sing N N 253 U "C5'" "H5'" sing N N 254 U "C5'" "H5''" sing N N 255 U "C4'" "O4'" sing N N 256 U "C4'" "C3'" sing N N 257 U "C4'" "H4'" sing N N 258 U "O4'" "C1'" sing N N 259 U "C3'" "O3'" sing N N 260 U "C3'" "C2'" sing N N 261 U "C3'" "H3'" sing N N 262 U "O3'" "HO3'" sing N N 263 U "C2'" "O2'" sing N N 264 U "C2'" "C1'" sing N N 265 U "C2'" "H2'" sing N N 266 U "O2'" "HO2'" sing N N 267 U "C1'" N1 sing N N 268 U "C1'" "H1'" sing N N 269 U N1 C2 sing N N 270 U N1 C6 sing N N 271 U C2 O2 doub N N 272 U C2 N3 sing N N 273 U N3 C4 sing N N 274 U N3 H3 sing N N 275 U C4 O4 doub N N 276 U C4 C5 sing N N 277 U C5 C6 doub N N 278 U C5 H5 sing N N 279 U C6 H6 sing N N 280 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6N5P 'double helix' 6N5P 'a-form double helix' 6N5P 'hairpin loop' 6N5P 'mismatched base pair' 6N5P 'internal loop' 6N5P 'quadruple helix' 6N5P 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 4 1_555 A A 114 1_555 -0.574 -0.276 -0.010 11.861 -9.192 -0.145 1 A_U4:A114_A A 4 ? A 114 ? 20 1 1 A G 5 1_555 A C 113 1_555 -0.278 -0.229 0.150 0.897 -12.628 3.925 2 A_G5:C113_A A 5 ? A 113 ? 19 1 1 A C 6 1_555 A G 112 1_555 0.570 -0.207 -0.193 1.619 -5.710 3.298 3 A_C6:G112_A A 6 ? A 112 ? 19 1 1 A C 7 1_555 A G 111 1_555 0.066 -0.148 -0.258 15.084 7.999 -0.313 4 A_C7:G111_A A 7 ? A 111 ? 19 1 1 A G 8 1_555 A A 110 1_555 6.670 -3.950 0.352 31.174 6.481 -3.683 5 A_G8:A110_A A 8 ? A 110 ? 11 10 1 A U 21 1_555 A U 15 1_555 -2.471 -1.255 0.352 8.436 -19.088 15.088 6 A_U21:U15_A A 21 ? A 15 ? 16 1 1 A U 22 1_555 A A 14 1_555 -0.097 -0.197 0.390 -2.877 -11.850 6.668 7 A_U22:A14_A A 22 ? A 14 ? 20 1 1 A G 23 1_555 A C 13 1_555 0.332 -0.319 -0.485 -4.649 -2.921 0.226 8 A_G23:C13_A A 23 ? A 13 ? 19 1 1 A G 24 1_555 A C 12 1_555 0.451 -0.113 0.018 -0.600 -4.375 -0.464 9 A_G24:C12_A A 24 ? A 12 ? 19 1 1 A U 25 1_555 A U 11 1_555 2.514 -2.082 -0.174 0.816 -6.750 16.354 10 A_U25:U11_A A 25 ? A 11 ? 16 1 1 A A 26 1_555 A G 109 1_555 -6.937 -4.729 0.462 3.489 -16.750 -8.170 11 A_A26:G109_A A 26 ? A 109 ? 11 10 1 A C 27 1_555 A G 108 1_555 -0.199 -0.337 -0.057 4.481 -4.356 0.122 12 A_C27:G108_A A 27 ? A 108 ? 19 1 1 A G 28 1_555 A C 107 1_555 -0.192 -0.263 -0.554 -8.818 -7.671 3.535 13 A_G28:C107_A A 28 ? A 107 ? 19 1 1 A G 29 1_555 A C 106 1_555 -0.162 -0.213 -0.139 -3.754 1.228 -0.728 14 A_G29:C106_A A 29 ? A 106 ? 19 1 1 A A 30 1_555 A U 105 1_555 -0.242 -0.201 0.175 3.497 2.061 1.812 15 A_A30:U105_A A 30 ? A 105 ? 20 1 1 A G 31 1_555 A C 104 1_555 -0.071 -0.354 -0.035 -1.604 -11.516 -0.117 16 A_G31:C104_A A 31 ? A 104 ? 19 1 1 A G 32 1_555 A A 103 1_555 6.818 -3.977 -0.146 -7.418 -15.921 -6.714 17 A_G32:A103_A A 32 ? A 103 ? 11 10 1 A C 35 1_555 A C 100 1_555 -4.046 -1.888 0.318 -1.950 -11.729 3.283 18 A_C35:C100_A A 35 ? A 100 ? ? 1 1 A C 36 1_555 A G 99 1_555 -0.217 -0.091 0.183 6.326 -5.565 -0.290 19 A_C36:G99_A A 36 ? A 99 ? 19 1 1 A C 90 1_555 A U 49 1_555 -6.869 -4.901 0.857 -29.135 8.493 -11.788 20 A_C90:U49_A A 90 ? A 49 ? ? 4 1 A A 91 1_555 A U 48 1_555 0.342 -0.028 -0.194 -10.705 13.951 0.098 21 A_A91:U48_A A 91 ? A 48 ? 20 1 1 A C 92 1_555 A G 47 1_555 -0.173 -0.368 -0.354 6.370 1.345 -3.614 22 A_C92:G47_A A 92 ? A 47 ? 19 1 1 A C 93 1_555 A G 46 1_555 0.418 -0.307 -0.380 6.043 -3.906 1.130 23 A_C93:G46_A A 93 ? A 46 ? 19 1 1 A C 94 1_555 A G 45 1_555 0.374 -0.404 0.030 -2.174 5.816 -1.765 24 A_C94:G45_A A 94 ? A 45 ? 19 1 1 A C 97 1_555 A G 44 1_555 -0.052 -0.358 -0.241 -0.103 -4.082 -2.738 25 A_C97:G44_A A 97 ? A 44 ? 19 1 1 A A 96 1_555 A U 42 1_555 -0.024 -0.294 0.203 6.429 -3.326 1.788 26 A_A96:U42_A A 96 ? A 42 ? 20 1 1 A C 64 1_555 A G 58 1_555 1.976 -0.312 0.000 20.175 30.282 -6.258 27 A_C64:G58_A A 64 ? A 58 ? ? 1 1 A U 65 1_555 A A 57 1_555 0.934 0.158 -0.562 5.188 -19.100 -0.375 28 A_U65:A57_A A 65 ? A 57 ? 20 1 1 A G 66 1_555 A C 56 1_555 -0.862 -0.154 -0.607 -4.103 6.999 11.476 29 A_G66:C56_A A 66 ? A 56 ? 19 1 1 A C 67 1_555 A G 55 1_555 0.355 -0.586 -0.527 5.066 -18.460 -7.641 30 A_C67:G55_A A 67 ? A 55 ? 19 1 1 A A 68 1_555 A U 54 1_555 0.519 -0.164 0.389 -2.458 -5.530 1.866 31 A_A68:U54_A A 68 ? A 54 ? 20 1 1 A G 69 1_555 A C 53 1_555 -0.327 -0.324 -0.185 -4.576 -12.485 3.854 32 A_G69:C53_A A 69 ? A 53 ? 19 1 1 A U 70 1_555 A U 52 1_555 2.274 -1.784 0.090 2.884 -15.705 17.497 33 A_U70:U52_A A 70 ? A 52 ? 16 1 1 A A 71 1_555 A G 89 1_555 -6.926 -4.424 -0.001 -1.461 -9.276 -7.773 34 A_A71:G89_A A 71 ? A 89 ? 11 10 1 A G 72 1_555 A C 88 1_555 -0.125 -0.402 -0.180 -0.110 -5.358 0.527 35 A_G72:C88_A A 72 ? A 88 ? 19 1 1 A G 73 1_555 A C 87 1_555 -0.203 -0.340 -0.027 -2.599 -4.885 3.322 36 A_G73:C87_A A 73 ? A 87 ? 19 1 1 A G 74 1_555 A C 86 1_555 -0.228 -0.200 0.049 -0.617 -2.110 -0.669 37 A_G74:C86_A A 74 ? A 86 ? 19 1 1 A A 75 1_555 A U 85 1_555 -0.131 -0.024 0.069 4.093 -5.040 -0.434 38 A_A75:U85_A A 75 ? A 85 ? 20 1 1 A U 76 1_555 A G 84 1_555 2.353 -0.789 -0.209 13.879 -5.483 -0.836 39 A_U76:G84_A A 76 ? A 84 ? 28 1 1 A G 120 1_555 A U 83 1_555 -2.362 -0.832 -0.228 1.356 -6.984 -3.565 40 A_G120:U83_A A 120 ? A 83 ? 28 1 1 A G 121 1_555 A C 82 1_555 -0.026 -0.118 -0.154 -7.402 -10.618 2.379 41 A_G121:C82_A A 121 ? A 82 ? 19 1 1 A A 122 1_555 A U 81 1_555 -0.304 -0.111 0.085 -5.182 -12.642 3.141 42 A_A122:U81_A A 122 ? A 81 ? 20 1 1 A A 123 1_555 A U 80 1_555 -0.046 -0.210 0.452 -0.975 -3.140 -5.925 43 A_A123:U80_A A 123 ? A 80 ? 20 1 1 A G 124 1_555 A C 79 1_555 0.050 -0.348 0.136 0.294 -7.866 -2.772 44 A_G124:C79_A A 124 ? A 79 ? 19 1 1 A G 125 1_555 A C 78 1_555 -0.217 -0.297 -0.294 -10.568 -17.896 -2.020 45 A_G125:C78_A A 125 ? A 78 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 4 1_555 A A 114 1_555 A G 5 1_555 A C 113 1_555 0.660 -1.573 3.485 -3.052 5.103 36.084 -3.230 -1.484 3.176 8.169 4.886 36.554 1 AA_U4G5:C113A114_AA A 4 ? A 114 ? A 5 ? A 113 ? 1 A G 5 1_555 A C 113 1_555 A C 6 1_555 A G 112 1_555 -0.782 -2.305 3.170 -1.309 4.408 31.619 -4.928 1.202 2.860 8.037 2.386 31.943 2 AA_G5C6:G112C113_AA A 5 ? A 113 ? A 6 ? A 112 ? 1 A C 6 1_555 A G 112 1_555 A C 7 1_555 A G 111 1_555 -0.835 -2.193 3.223 -2.521 1.784 22.999 -6.052 1.228 3.119 4.449 6.287 23.202 3 AA_C6C7:G111G112_AA A 6 ? A 112 ? A 7 ? A 111 ? 1 A C 7 1_555 A G 111 1_555 A G 8 1_555 A A 110 1_555 -0.569 -0.972 3.030 -1.701 8.121 48.211 -1.734 0.570 2.858 9.857 2.064 48.878 4 AA_C7G8:A110G111_AA A 7 ? A 111 ? A 8 ? A 110 ? 1 A U 21 1_555 A U 15 1_555 A U 22 1_555 A A 14 1_555 -0.403 -1.095 3.563 -2.080 7.800 41.533 -2.367 0.333 3.329 10.875 2.900 42.276 5 AA_U21U22:A14U15_AA A 21 ? A 15 ? A 22 ? A 14 ? 1 A U 22 1_555 A A 14 1_555 A G 23 1_555 A C 13 1_555 -0.872 -1.499 3.200 4.801 9.987 29.756 -4.375 2.380 2.417 18.653 -8.967 31.709 6 AA_U22G23:C13A14_AA A 22 ? A 14 ? A 23 ? A 13 ? 1 A G 23 1_555 A C 13 1_555 A G 24 1_555 A C 12 1_555 0.501 -2.574 3.369 -6.523 -0.301 27.060 -5.280 -2.633 3.191 -0.632 13.689 27.822 7 AA_G23G24:C12C13_AA A 23 ? A 13 ? A 24 ? A 12 ? 1 A G 24 1_555 A C 12 1_555 A U 25 1_555 A U 11 1_555 0.516 -1.722 3.326 1.071 4.099 37.895 -3.150 -0.656 3.143 6.288 -1.643 38.122 8 AA_G24U25:U11C12_AA A 24 ? A 12 ? A 25 ? A 11 ? 1 A U 25 1_555 A U 11 1_555 A A 26 1_555 A G 109 1_555 0.564 0.084 3.172 0.073 2.235 21.364 -0.650 -1.486 3.166 6.008 -0.197 21.479 9 AA_U25A26:G109U11_AA A 25 ? A 11 ? A 26 ? A 109 ? 1 A A 26 1_555 A G 109 1_555 A C 27 1_555 A G 108 1_555 1.546 -0.938 3.269 0.461 8.356 61.906 -1.279 -1.471 3.142 8.084 -0.446 62.413 10 AA_A26C27:G108G109_AA A 26 ? A 109 ? A 27 ? A 108 ? 1 A C 27 1_555 A G 108 1_555 A G 28 1_555 A C 107 1_555 1.178 -2.400 3.721 6.480 6.079 27.863 -6.213 -0.783 3.319 12.236 -13.043 29.219 11 AA_C27G28:C107G108_AA A 27 ? A 108 ? A 28 ? A 107 ? 1 A G 28 1_555 A C 107 1_555 A G 29 1_555 A C 106 1_555 -0.873 -2.419 3.094 -4.142 2.748 27.293 -5.663 0.892 2.939 5.763 8.686 27.734 12 AA_G28G29:C106C107_AA A 28 ? A 107 ? A 29 ? A 106 ? 1 A G 29 1_555 A C 106 1_555 A A 30 1_555 A U 105 1_555 0.145 -2.159 3.102 -2.766 0.061 28.191 -4.425 -0.902 3.069 0.125 5.661 28.323 13 AA_G29A30:U105C106_AA A 29 ? A 106 ? A 30 ? A 105 ? 1 A A 30 1_555 A U 105 1_555 A G 31 1_555 A C 104 1_555 0.170 -2.001 3.565 3.880 -1.203 32.661 -3.306 0.431 3.629 -2.129 -6.866 32.906 14 AA_A30G31:C104U105_AA A 30 ? A 105 ? A 31 ? A 104 ? 1 A G 31 1_555 A C 104 1_555 A G 32 1_555 A A 103 1_555 -0.904 -0.910 3.672 2.782 6.693 60.670 -1.248 1.037 3.523 6.601 -2.744 61.060 15 AA_G31G32:A103C104_AA A 31 ? A 104 ? A 32 ? A 103 ? 1 A C 35 1_555 A C 100 1_555 A C 36 1_555 A G 99 1_555 0.089 -0.894 3.094 -0.442 3.011 47.182 -1.344 -0.144 3.034 3.757 0.551 47.274 16 AA_C35C36:G99C100_AA A 35 ? A 100 ? A 36 ? A 99 ? 1 A C 90 1_555 A U 49 1_555 A A 91 1_555 A U 48 1_555 0.972 -0.985 2.859 0.692 10.511 55.174 -1.558 -1.000 2.657 11.234 -0.740 56.093 17 AA_C90A91:U48U49_AA A 90 ? A 49 ? A 91 ? A 48 ? 1 A A 91 1_555 A U 48 1_555 A C 92 1_555 A G 47 1_555 0.135 -2.110 3.058 2.746 1.005 24.070 -5.318 0.482 2.965 2.398 -6.554 24.244 18 AA_A91C92:G47U48_AA A 91 ? A 48 ? A 92 ? A 47 ? 1 A C 92 1_555 A G 47 1_555 A C 93 1_555 A G 46 1_555 0.942 -2.167 3.456 1.374 -1.335 31.005 -3.770 -1.475 3.581 -2.494 -2.568 31.062 19 AA_C92C93:G46G47_AA A 92 ? A 47 ? A 93 ? A 46 ? 1 A C 93 1_555 A G 46 1_555 A C 94 1_555 A G 45 1_555 -0.832 -2.412 3.606 -2.687 3.073 28.018 -5.696 1.033 3.390 6.305 5.514 28.308 20 AA_C93C94:G45G46_AA A 93 ? A 46 ? A 94 ? A 45 ? 1 A C 94 1_555 A G 45 1_555 A C 97 1_555 A G 44 1_555 -2.879 -1.438 3.056 -0.024 0.452 47.237 -1.829 3.591 3.044 0.564 0.030 47.239 21 AA_C94C97:G44G45_AA A 94 ? A 45 ? A 97 ? A 44 ? 1 A C 97 1_555 A G 44 1_555 A A 96 1_555 A U 42 1_555 0.525 -3.771 3.277 1.659 1.793 -8.901 19.095 7.279 3.798 -11.275 10.436 -9.229 22 AA_C97A96:U42G44_AA A 97 ? A 44 ? A 96 ? A 42 ? 1 A C 64 1_555 A G 58 1_555 A U 65 1_555 A A 57 1_555 0.871 -2.319 3.506 15.404 23.717 26.704 -6.116 0.386 1.388 39.826 -25.867 38.707 23 AA_C64U65:A57G58_AA A 64 ? A 58 ? A 65 ? A 57 ? 1 A U 65 1_555 A A 57 1_555 A G 66 1_555 A C 56 1_555 0.482 -1.495 3.274 -6.657 22.965 25.471 -5.389 -1.644 1.353 42.111 12.208 34.800 24 AA_U65G66:C56A57_AA A 65 ? A 57 ? A 66 ? A 56 ? 1 A G 66 1_555 A C 56 1_555 A C 67 1_555 A G 55 1_555 -0.712 -1.526 3.151 0.002 4.263 37.032 -2.917 1.115 2.963 6.685 -0.003 37.269 25 AA_G66C67:G55C56_AA A 66 ? A 56 ? A 67 ? A 55 ? 1 A C 67 1_555 A G 55 1_555 A A 68 1_555 A U 54 1_555 0.222 -1.442 3.444 -6.838 12.049 30.978 -4.358 -1.449 2.614 21.275 12.074 33.865 26 AA_C67A68:U54G55_AA A 67 ? A 55 ? A 68 ? A 54 ? 1 A A 68 1_555 A U 54 1_555 A G 69 1_555 A C 53 1_555 0.776 -2.519 3.297 5.265 4.740 18.996 -9.201 0.063 2.709 13.759 -15.282 20.262 27 AA_A68G69:C53U54_AA A 68 ? A 54 ? A 69 ? A 53 ? 1 A G 69 1_555 A C 53 1_555 A U 70 1_555 A U 52 1_555 0.586 -0.752 3.110 -1.802 2.293 43.475 -1.221 -0.953 3.043 3.092 2.430 43.568 28 AA_G69U70:U52C53_AA A 69 ? A 53 ? A 70 ? A 52 ? 1 A U 70 1_555 A U 52 1_555 A A 71 1_555 A G 89 1_555 0.485 -0.009 3.486 -5.453 0.827 26.316 -0.243 -2.517 3.318 1.791 11.811 26.878 29 AA_U70A71:G89U52_AA A 70 ? A 52 ? A 71 ? A 89 ? 1 A A 71 1_555 A G 89 1_555 A G 72 1_555 A C 88 1_555 1.078 -0.858 3.373 -0.557 4.875 58.446 -1.134 -1.130 3.288 4.983 0.569 58.633 30 AA_A71G72:C88G89_AA A 71 ? A 89 ? A 72 ? A 88 ? 1 A G 72 1_555 A C 88 1_555 A G 73 1_555 A C 87 1_555 0.909 -2.155 3.284 0.660 3.139 28.927 -4.957 -1.669 3.058 6.259 -1.315 29.101 31 AA_G72G73:C87C88_AA A 72 ? A 88 ? A 73 ? A 87 ? 1 A G 73 1_555 A C 87 1_555 A G 74 1_555 A C 86 1_555 -1.093 -2.516 3.130 -1.362 4.708 26.253 -6.551 2.049 2.697 10.251 2.966 26.699 32 AA_G73G74:C86C87_AA A 73 ? A 87 ? A 74 ? A 86 ? 1 A G 74 1_555 A C 86 1_555 A A 75 1_555 A U 85 1_555 -0.174 -1.780 3.168 -2.447 5.352 33.727 -3.808 -0.063 2.866 9.138 4.178 34.222 33 AA_G74A75:U85C86_AA A 74 ? A 86 ? A 75 ? A 85 ? 1 A A 75 1_555 A U 85 1_555 A U 76 1_555 A G 84 1_555 0.022 -1.513 3.026 1.555 3.889 38.411 -2.719 0.139 2.864 5.890 -2.354 38.630 34 AA_A75U76:G84U85_AA A 75 ? A 85 ? A 76 ? A 84 ? 1 A U 76 1_555 A G 84 1_555 A G 120 1_555 A U 83 1_555 -2.964 -1.039 3.171 -10.429 11.202 32.903 -3.339 3.219 3.408 18.577 17.295 36.200 35 AA_U76G120:U83G84_AA A 76 ? A 84 ? A 120 ? A 83 ? 1 A G 120 1_555 A U 83 1_555 A G 121 1_555 A C 82 1_555 0.071 -1.351 3.623 -0.891 2.520 43.461 -2.087 -0.191 3.541 3.400 1.203 43.539 36 AA_G120G121:C82U83_AA A 120 ? A 83 ? A 121 ? A 82 ? 1 A G 121 1_555 A C 82 1_555 A A 122 1_555 A U 81 1_555 0.145 -1.423 3.119 -0.546 6.305 30.272 -3.782 -0.368 2.770 11.909 1.032 30.911 37 AA_G121A122:U81C82_AA A 121 ? A 82 ? A 122 ? A 81 ? 1 A A 122 1_555 A U 81 1_555 A A 123 1_555 A U 80 1_555 -0.492 -1.445 3.072 -1.590 6.835 34.671 -3.288 0.599 2.765 11.325 2.635 35.352 38 AA_A122A123:U80U81_AA A 122 ? A 81 ? A 123 ? A 80 ? 1 A A 123 1_555 A U 80 1_555 A G 124 1_555 A C 79 1_555 0.448 -1.237 3.270 3.379 11.541 33.610 -3.610 -0.267 2.742 19.210 -5.625 35.638 39 AA_A123G124:C79U80_AA A 123 ? A 80 ? A 124 ? A 79 ? 1 A G 124 1_555 A C 79 1_555 A G 125 1_555 A C 78 1_555 0.638 -2.235 3.410 3.914 10.429 29.396 -5.978 -0.487 2.550 19.682 -7.387 31.393 40 AA_G124G125:C78C79_AA A 124 ? A 79 ? A 125 ? A 78 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1616265 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QK8 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #