data_6N5S # _entry.id 6N5S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6N5S pdb_00006n5s 10.2210/pdb6n5s/pdb WWPDB D_1000238232 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2023-10-11 3 'Structure model' 2 0 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' Advisory 7 3 'Structure model' 'Atomic model' 8 3 'Structure model' 'Data collection' 9 3 'Structure model' 'Derived calculations' 10 3 'Structure model' 'Non-polymer description' 11 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_initial_refinement_model 8 3 'Structure model' atom_site 9 3 'Structure model' atom_site_anisotrop 10 3 'Structure model' chem_comp 11 3 'Structure model' chem_comp_atom 12 3 'Structure model' chem_comp_bond 13 3 'Structure model' pdbx_entity_nonpoly 14 3 'Structure model' pdbx_entry_details 15 3 'Structure model' pdbx_nonpoly_scheme 16 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.label_atom_id' 9 3 'Structure model' '_atom_site.label_comp_id' 10 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 11 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 12 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 13 3 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 14 3 'Structure model' '_chem_comp.formula' 15 3 'Structure model' '_chem_comp.formula_weight' 16 3 'Structure model' '_chem_comp.id' 17 3 'Structure model' '_chem_comp.mon_nstd_flag' 18 3 'Structure model' '_chem_comp.name' 19 3 'Structure model' '_chem_comp.type' 20 3 'Structure model' '_pdbx_entity_nonpoly.comp_id' 21 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 22 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 23 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_atom_id' 24 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_comp_id' 25 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_atom_id' 26 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_comp_id' 27 3 'Structure model' '_struct_site.details' 28 3 'Structure model' '_struct_site.pdbx_auth_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6N5S _pdbx_database_status.recvd_initial_deposition_date 2018-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6N5K unspecified PDB . 6N5L unspecified PDB . 6N5N unspecified PDB . 6N5O unspecified PDB . 6N5P unspecified PDB . 6N5Q unspecified PDB . 6N5R unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shoffner, G.M.' 1 0000-0001-5479-4203 'Peng, Z.' 2 0000-0001-7666-1276 'Guo, F.' 3 0000-0002-6245-1486 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shoffner, G.M.' 1 0000-0001-5479-4203 primary 'Peng, Z.' 2 0000-0001-7666-1276 primary 'Guo, F.' 3 0000-0002-6245-1486 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (123-MER)' 39927.621 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 3 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 7 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCAAAGUUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACC UUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCAAAGUUGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUCU GUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 4 'MAGNESIUM ION' MG 5 'POTASSIUM ION' K 6 'SULFATE ION' SO4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 A n 1 15 A n 1 16 A n 1 17 G n 1 18 U n 1 19 U n 1 20 G n 1 21 G n 1 22 U n 1 23 A n 1 24 C n 1 25 G n 1 26 G n 1 27 A n 1 28 G n 1 29 G n 1 30 A n 1 31 A n 1 32 C n 1 33 C n 1 34 G n 1 35 C n 1 36 U n 1 37 U n 1 38 U n 1 39 U n 1 40 U n 1 41 G n 1 42 G n 1 43 G n 1 44 G n 1 45 U n 1 46 U n 1 47 A n 1 48 A n 1 49 U n 1 50 C n 1 51 U n 1 52 G n 1 53 C n 1 54 A n 1 55 G n 1 56 U n 1 57 G n 1 58 A n 1 59 A n 1 60 G n 1 61 C n 1 62 U n 1 63 G n 1 64 C n 1 65 A n 1 66 G n 1 67 U n 1 68 A n 1 69 G n 1 70 G n 1 71 G n 1 72 A n 1 73 U n 1 74 A n 1 75 C n 1 76 C n 1 77 U n 1 78 U n 1 79 C n 1 80 U n 1 81 G n 1 82 U n 1 83 C n 1 84 C n 1 85 C n 1 86 G n 1 87 C n 1 88 A n 1 89 C n 1 90 C n 1 91 C n 1 92 G n 1 93 A n 1 94 C n 1 95 A n 1 96 G n 1 97 C n 1 98 U n 1 99 A n 1 100 A n 1 101 C n 1 102 U n 1 103 C n 1 104 C n 1 105 G n 1 106 G n 1 107 A n 1 108 G n 1 109 G n 1 110 C n 1 111 A n 1 112 A n 1 113 U n 1 114 A n 1 115 A n 1 116 A n 1 117 G n 1 118 G n 1 119 A n 1 120 A n 1 121 G n 1 122 G n 1 123 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 123 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 C 35 35 35 C C A . n A 1 36 U 36 36 36 U U A . n A 1 37 U 37 37 37 U U A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 U 46 46 46 U U A . n A 1 47 A 47 47 47 A A A . n A 1 48 A 48 48 48 A A A . n A 1 49 U 49 49 49 U U A . n A 1 50 C 50 50 50 C C A . n A 1 51 U 51 51 51 U U A . n A 1 52 G 52 52 52 G G A . n A 1 53 C 53 53 53 C C A . n A 1 54 A 54 54 54 A A A . n A 1 55 G 55 55 55 G G A . n A 1 56 U 56 56 56 U U A . n A 1 57 G 57 57 57 G G A . n A 1 58 A 58 58 58 A A A . n A 1 59 A 59 59 59 A A A . n A 1 60 G 60 60 60 G G A . n A 1 61 C 61 61 61 C C A . n A 1 62 U 62 62 62 U U A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 A 65 65 65 A A A . n A 1 66 G 66 66 66 G G A . n A 1 67 U 67 67 67 U U A . n A 1 68 A 68 68 68 A A A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 G 71 71 71 G G A . n A 1 72 A 72 72 72 A A A . n A 1 73 U 73 73 73 U U A . n A 1 74 A 74 74 74 A A A . n A 1 75 C 75 75 75 C C A . n A 1 76 C 76 76 76 C C A . n A 1 77 U 77 77 77 U U A . n A 1 78 U 78 78 78 U U A . n A 1 79 C 79 79 79 C C A . n A 1 80 U 80 80 80 U U A . n A 1 81 G 81 81 81 G G A . n A 1 82 U 82 82 82 U U A . n A 1 83 C 83 83 83 C C A . n A 1 84 C 84 84 84 C C A . n A 1 85 C 85 85 85 C C A . n A 1 86 G 86 86 86 G G A . n A 1 87 C 87 87 87 C C A . n A 1 88 A 88 88 88 A A A . n A 1 89 C 89 89 89 C C A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 G 92 92 92 G G A . n A 1 93 A 93 93 93 A A A . n A 1 94 C 94 94 94 C C A . n A 1 95 A 95 95 95 A A A . n A 1 96 G 96 96 96 G G A . n A 1 97 C 97 97 97 C C A . n A 1 98 U 98 98 98 U U A . n A 1 99 A 99 99 99 A A A . n A 1 100 A 100 100 100 A A A . n A 1 101 C 101 101 101 C C A . n A 1 102 U 102 102 102 U U A . n A 1 103 C 103 103 103 C C A . n A 1 104 C 104 104 104 C C A . n A 1 105 G 105 105 105 G G A . n A 1 106 G 106 106 106 G G A . n A 1 107 A 107 107 107 A A A . n A 1 108 G 108 108 108 G G A . n A 1 109 G 109 109 109 G G A . n A 1 110 C 110 110 110 C C A . n A 1 111 A 111 111 111 A A A . n A 1 112 A 112 112 112 A A A . n A 1 113 U 113 113 113 U U A . n A 1 114 A 114 114 114 A A A . n A 1 115 A 115 115 115 A A A . n A 1 116 A 116 116 116 A A A . n A 1 117 G 117 117 117 G G A . n A 1 118 G 118 118 118 G G A . n A 1 119 A 119 119 119 A A A . n A 1 120 A 120 120 120 A A A . n A 1 121 G 121 121 121 G G A . n A 1 122 G 122 122 122 G G A . n A 1 123 A 123 123 123 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 201 124 5GP G A . C 3 2BA 1 202 201 2BA 2BA A . D 3 2BA 1 203 202 2BA 2BA A . E 4 MG 1 204 203 MG MG A . F 4 MG 1 205 204 MG MG A . G 5 K 1 206 205 K K A . H 4 MG 1 207 206 MG MG A . I 4 MG 1 208 207 MG MG A . J 6 SO4 1 209 208 SO4 SO4 A . K 4 MG 1 210 1 MG MG A . L 7 HOH 1 301 2 HOH HOH A . L 7 HOH 2 302 401 HOH HOH A . L 7 HOH 3 303 403 HOH HOH A . L 7 HOH 4 304 402 HOH HOH A . L 7 HOH 5 305 1 HOH HOH A . L 7 HOH 6 306 404 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G 5 1 N 1 A 5GP 201 ? O2P ? B 5GP 1 O2P # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6N5S _cell.details ? _cell.formula_units_Z ? _cell.length_a 114.560 _cell.length_a_esd ? _cell.length_b 114.560 _cell.length_b_esd ? _cell.length_c 115.060 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6N5S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 77.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details 'Room temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.9 M (NH4)2SO4, 0.2 M Li2SO4, and 0.1 M HEPES pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Cryo-Cooled double crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9202 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9202 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6N5S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.80 _reflns.d_resolution_low 75.1370 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21893 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.92 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.062 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.87 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.95 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.73 _reflns_shell.pdbx_Rpim_I_all 0.499 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.709 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 457.690 _refine.B_iso_mean 122.0111 _refine.B_iso_min 47.010 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6N5S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.8020 _refine.ls_d_res_low 75.1370 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21828 _refine.ls_number_reflns_R_free 2184 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8400 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1789 _refine.ls_R_factor_R_free 0.2008 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1765 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4QK8 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.0400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.8020 _refine_hist.d_res_low 75.1370 _refine_hist.pdbx_number_atoms_ligand 122 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2768 _refine_hist.pdbx_number_residues_total 123 _refine_hist.pdbx_B_iso_mean_ligand 89.34 _refine_hist.pdbx_B_iso_mean_solvent 78.86 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2640 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.8025 2.8634 1338 . 134 1204 99.0000 . . . 0.4165 0.0000 0.4645 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.8634 2.9300 1332 . 133 1199 100.0000 . . . 0.3697 0.0000 0.3768 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.9300 3.0033 1349 . 135 1214 100.0000 . . . 0.3908 0.0000 0.3433 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.0033 3.0845 1344 . 135 1209 100.0000 . . . 0.3109 0.0000 0.2734 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.0845 3.1753 1352 . 135 1217 100.0000 . . . 0.2709 0.0000 0.2547 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.1753 3.2777 1348 . 135 1213 100.0000 . . . 0.3008 0.0000 0.2534 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.2777 3.3949 1337 . 133 1204 100.0000 . . . 0.2493 0.0000 0.2289 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.3949 3.5308 1368 . 137 1231 100.0000 . . . 0.2354 0.0000 0.2106 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.5308 3.6915 1357 . 136 1221 100.0000 . . . 0.2191 0.0000 0.2079 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.6915 3.8861 1340 . 134 1206 100.0000 . . . 0.1943 0.0000 0.1823 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.8861 4.1296 1364 . 136 1228 100.0000 . . . 0.2142 0.0000 0.1728 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.1296 4.4484 1361 . 137 1224 100.0000 . . . 0.1758 0.0000 0.1510 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.4484 4.8960 1380 . 138 1242 100.0000 . . . 0.1546 0.0000 0.1464 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.8960 5.6042 1396 . 139 1257 100.0000 . . . 0.1566 0.0000 0.1357 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 5.6042 7.0599 1397 . 140 1257 100.0000 . . . 0.1572 0.0000 0.1479 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 7.0599 75.1639 1465 . 147 1318 100.0000 . . . 0.2027 0.0000 0.1578 . . . . . . 16 . . . # _struct.entry_id 6N5S _struct.title 'Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6N5S _struct_keywords.text 'microRNA, RNA processing, Protein-RNA interaction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 4 ? I N N 4 ? J N N 6 ? K N N 4 ? L N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6N5S _struct_ref.pdbx_db_accession 6N5S _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6N5S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6N5S _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 123 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 123 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.562 ? ? metalc1 metalc ? ? A GTP 1 "O2'" ? ? ? 1_555 G K . K ? ? A GTP 1 A K 206 1_555 ? ? ? ? ? ? ? 3.484 ? ? metalc2 metalc ? ? A G 8 OP2 ? ? ? 1_555 I MG . MG ? ? A G 8 A MG 208 1_555 ? ? ? ? ? ? ? 2.967 ? ? metalc3 metalc ? ? A A 27 OP1 ? ? ? 1_555 F MG . MG ? ? A A 27 A MG 205 1_555 ? ? ? ? ? ? ? 2.948 ? ? metalc4 metalc ? ? A G 29 OP2 ? ? ? 1_555 E MG . MG ? ? A G 29 A MG 204 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc5 metalc ? ? A G 96 OP1 ? ? ? 1_555 E MG . MG ? ? A G 96 A MG 204 1_555 ? ? ? ? ? ? ? 2.531 ? ? metalc6 metalc ? ? A G 96 OP2 ? ? ? 1_555 H MG . MG ? ? A G 96 A MG 207 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc7 metalc ? ? A C 97 OP2 ? ? ? 1_555 E MG . MG ? ? A C 97 A MG 204 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc8 metalc ? ? A U 98 O4 ? ? ? 1_555 E MG . MG ? ? A U 98 A MG 204 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc9 metalc ? ? K MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 210 A HOH 302 1_555 ? ? ? ? ? ? ? 2.540 ? ? hydrog1 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 111 N1 ? ? A U 4 A A 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 111 N6 ? ? A U 4 A A 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 110 N3 ? ? A G 5 A C 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 110 O2 ? ? A G 5 A C 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 110 N4 ? ? A G 5 A C 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 109 N1 ? ? A C 6 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 109 O6 ? ? A C 6 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 109 N2 ? ? A C 6 A G 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 108 N1 ? ? A C 7 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 108 O6 ? ? A C 7 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 108 N2 ? ? A C 7 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 107 N7 ? ? A G 8 A A 107 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 107 N6 ? ? A G 8 A A 107 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 105 N2 ? ? A A 9 A G 105 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 22 O2 ? ? A U 11 A U 22 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 22 N3 ? ? A U 11 A U 22 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 12 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 12 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 12 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 13 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 13 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 13 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 19 N3 ? ? A A 14 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 14 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 23 N6 ? ? ? 1_555 A G 106 N3 ? ? A A 23 A G 106 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog26 hydrog ? ? A A 23 N7 ? ? ? 1_555 A G 106 N2 ? ? A A 23 A G 106 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 105 N1 ? ? A C 24 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 105 O6 ? ? A C 24 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 105 N2 ? ? A C 24 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 25 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 25 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 25 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 103 N3 ? ? A G 26 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 103 O2 ? ? A G 26 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 103 N4 ? ? A G 26 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 27 N1 ? ? ? 1_555 A U 102 N3 ? ? A A 27 A U 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 27 N6 ? ? ? 1_555 A U 102 O4 ? ? A A 27 A U 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 101 N3 ? ? A G 28 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 101 O2 ? ? A G 28 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 101 N4 ? ? A G 28 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 100 N7 ? ? A G 29 A A 100 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 100 N6 ? ? A G 29 A A 100 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? A C 32 N4 ? ? ? 1_555 A C 97 O2 ? ? A C 32 A C 97 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog44 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 96 N1 ? ? A C 33 A G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 96 O6 ? ? A C 33 A G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 96 N2 ? ? A C 33 A G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 39 N3 ? ? ? 1_555 A A 93 N1 ? ? A U 39 A A 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 39 O4 ? ? ? 1_555 A A 93 N6 ? ? A U 39 A A 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 41 O6 ? ? ? 1_555 A G 92 N2 ? ? A G 41 A G 92 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 94 N3 ? ? A G 41 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 94 O2 ? ? A G 41 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 41 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 42 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 42 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 42 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 42 N2 ? ? ? 1_555 A A 95 N1 ? ? A G 42 A A 95 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog57 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 43 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 43 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 43 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 89 N3 ? ? A G 44 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 89 O2 ? ? A G 44 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 89 N4 ? ? A G 44 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 45 N3 ? ? ? 1_555 A A 88 N1 ? ? A U 45 A A 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 45 O4 ? ? ? 1_555 A A 88 N6 ? ? A U 45 A A 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 46 O2 ? ? ? 1_555 A C 87 N4 ? ? A U 46 A C 87 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog66 hydrog ? ? A A 47 N3 ? ? ? 1_555 A G 69 N2 ? ? A A 47 A G 69 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog67 hydrog ? ? A U 49 N3 ? ? ? 1_555 A U 67 O2 ? ? A U 49 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog68 hydrog ? ? A U 49 O4 ? ? ? 1_555 A U 67 N3 ? ? A U 49 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog69 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 50 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 50 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 50 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 65 N1 ? ? A U 51 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 65 N6 ? ? A U 51 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog75 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 53 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 53 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 53 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 54 N1 ? ? ? 1_555 A U 62 N3 ? ? A A 54 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 54 N6 ? ? ? 1_555 A U 62 O4 ? ? A A 54 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 55 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 55 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 55 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 55 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 55 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 55 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 56 O2 ? ? ? 1_555 A A 59 N6 ? ? A U 56 A A 59 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog84 hydrog ? ? A A 68 N6 ? ? ? 1_555 A G 86 N3 ? ? A A 68 A G 86 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog85 hydrog ? ? A A 68 N7 ? ? ? 1_555 A G 86 N2 ? ? A A 68 A G 86 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog86 hydrog ? ? A G 69 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 69 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 69 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 69 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 69 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 69 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 70 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 70 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 70 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 70 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 70 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 70 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 71 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 71 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 71 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 71 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 71 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 71 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A A 72 N1 ? ? ? 1_555 A U 82 N3 ? ? A A 72 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A A 72 N6 ? ? ? 1_555 A U 82 O4 ? ? A A 72 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A U 73 N3 ? ? ? 1_555 A G 81 O6 ? ? A U 73 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog98 hydrog ? ? A U 73 O2 ? ? ? 1_555 A G 81 N1 ? ? A U 73 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog99 hydrog ? ? A C 75 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 75 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 75 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 75 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 75 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 75 A G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 121 N1 ? ? A C 76 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 121 O6 ? ? A C 76 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 121 N2 ? ? A C 76 A G 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A U 77 N3 ? ? ? 1_555 A A 120 N1 ? ? A U 77 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A U 77 O4 ? ? ? 1_555 A A 120 N6 ? ? A U 77 A A 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A U 78 N3 ? ? ? 1_555 A A 119 N1 ? ? A U 78 A A 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A U 78 O4 ? ? ? 1_555 A A 119 N6 ? ? A U 78 A A 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 79 N3 ? ? ? 1_555 A G 118 N1 ? ? A C 79 A G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 79 N4 ? ? ? 1_555 A G 118 O6 ? ? A C 79 A G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 79 O2 ? ? ? 1_555 A G 118 N2 ? ? A C 79 A G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A U 80 N3 ? ? ? 1_555 A G 117 O6 ? ? A U 80 A G 117 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog113 hydrog ? ? A U 80 O2 ? ? ? 1_555 A G 117 N1 ? ? A U 80 A G 117 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog114 hydrog ? ? A G 81 N2 ? ? ? 1_555 A A 115 N3 ? ? A G 81 A A 115 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog115 hydrog ? ? A C 91 O2 ? ? ? 1_555 A A 95 N6 ? ? A C 91 A A 95 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog116 hydrog ? ? A G 92 N3 ? ? ? 1_555 A C 94 N4 ? ? A G 92 A C 94 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 29 ? A G 29 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP1 ? A G 96 ? A G 96 ? 1_555 81.0 ? 2 OP2 ? A G 29 ? A G 29 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP2 ? A C 97 ? A C 97 ? 1_555 157.8 ? 3 OP1 ? A G 96 ? A G 96 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP2 ? A C 97 ? A C 97 ? 1_555 77.3 ? 4 OP2 ? A G 29 ? A G 29 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O4 ? A U 98 ? A U 98 ? 1_555 85.2 ? 5 OP1 ? A G 96 ? A G 96 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O4 ? A U 98 ? A U 98 ? 1_555 85.2 ? 6 OP2 ? A C 97 ? A C 97 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 O4 ? A U 98 ? A U 98 ? 1_555 88.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5GP 201 ? 1 'binding site for residue 5GP A 201' AC2 Software A 2BA 202 ? 15 'binding site for residue 2BA A 202' AC3 Software A 2BA 203 ? 14 'binding site for residue 2BA A 203' AC4 Software A MG 204 ? 5 'binding site for residue MG A 204' AC5 Software A MG 205 ? 2 'binding site for residue MG A 205' AC6 Software A K 206 ? 1 'binding site for residue K A 206' AC7 Software A MG 207 ? 1 'binding site for residue MG A 207' AC8 Software A MG 208 ? 4 'binding site for residue MG A 208' AC9 Software A SO4 209 ? 3 'binding site for residue SO4 A 209' AD1 Software A MG 210 ? 4 'binding site for residue MG A 210' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 A A 123 ? A A 123 . ? 1_555 ? 2 AC2 15 G A 5 ? G A 5 . ? 1_555 ? 3 AC2 15 C A 6 ? C A 6 . ? 1_555 ? 4 AC2 15 C A 7 ? C A 7 . ? 1_555 ? 5 AC2 15 G A 8 ? G A 8 . ? 1_555 ? 6 AC2 15 A A 47 ? A A 47 . ? 1_555 ? 7 AC2 15 G A 70 ? G A 70 . ? 1_555 ? 8 AC2 15 G A 71 ? G A 71 . ? 1_555 ? 9 AC2 15 A A 72 ? A A 72 . ? 1_555 ? 10 AC2 15 U A 73 ? U A 73 . ? 1_555 ? 11 AC2 15 A A 74 ? A A 74 . ? 1_555 ? 12 AC2 15 C A 84 ? C A 84 . ? 1_555 ? 13 AC2 15 C A 85 ? C A 85 . ? 1_555 ? 14 AC2 15 G A 109 ? G A 109 . ? 1_555 ? 15 AC2 15 C A 110 ? C A 110 . ? 1_555 ? 16 AC2 15 A A 111 ? A A 111 . ? 1_555 ? 17 AC3 14 A A 9 ? A A 9 . ? 1_555 ? 18 AC3 14 G A 25 ? G A 25 . ? 1_555 ? 19 AC3 14 G A 26 ? G A 26 . ? 1_555 ? 20 AC3 14 A A 27 ? A A 27 . ? 1_555 ? 21 AC3 14 G A 28 ? G A 28 . ? 1_555 ? 22 AC3 14 G A 43 ? G A 43 . ? 1_555 ? 23 AC3 14 G A 44 ? G A 44 . ? 1_555 ? 24 AC3 14 U A 45 ? U A 45 . ? 1_555 ? 25 AC3 14 U A 46 ? U A 46 . ? 1_555 ? 26 AC3 14 C A 90 ? C A 90 . ? 1_555 ? 27 AC3 14 C A 91 ? C A 91 . ? 1_555 ? 28 AC3 14 A A 95 ? A A 95 . ? 1_555 ? 29 AC3 14 C A 104 ? C A 104 . ? 1_555 ? 30 AC3 14 G A 105 ? G A 105 . ? 1_555 ? 31 AC4 5 G A 29 ? G A 29 . ? 1_555 ? 32 AC4 5 A A 95 ? A A 95 . ? 1_555 ? 33 AC4 5 G A 96 ? G A 96 . ? 1_555 ? 34 AC4 5 C A 97 ? C A 97 . ? 1_555 ? 35 AC4 5 U A 98 ? U A 98 . ? 1_555 ? 36 AC5 2 A A 27 ? A A 27 . ? 1_555 ? 37 AC5 2 U A 45 ? U A 45 . ? 1_555 ? 38 AC6 1 GTP A 1 ? GTP A 1 . ? 1_555 ? 39 AC7 1 G A 96 ? G A 96 . ? 1_555 ? 40 AC8 4 C A 7 ? C A 7 . ? 1_555 ? 41 AC8 4 G A 8 ? G A 8 . ? 1_555 ? 42 AC8 4 G A 71 ? G A 71 . ? 1_555 ? 43 AC8 4 A A 72 ? A A 72 . ? 1_555 ? 44 AC9 3 A A 31 ? A A 31 . ? 1_555 ? 45 AC9 3 C A 97 ? C A 97 . ? 1_555 ? 46 AC9 3 U A 98 ? U A 98 . ? 1_555 ? 47 AD1 4 G A 2 ? G A 2 . ? 1_555 ? 48 AD1 4 C A 7 ? C A 7 . ? 1_555 ? 49 AD1 4 G A 8 ? G A 8 . ? 1_555 ? 50 AD1 4 HOH L . ? HOH A 302 . ? 1_555 ? # _pdbx_entry_details.entry_id 6N5S _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A GTP 1 ? ? "O3'" A GTP 1 ? ? P A G 2 ? ? 106.64 119.70 -13.06 1.20 Y 2 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 117.37 110.50 6.87 1.10 Y # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -78.0159 _pdbx_refine_tls.origin_y 18.6980 _pdbx_refine_tls.origin_z -13.9445 _pdbx_refine_tls.T[1][1] 1.5093 _pdbx_refine_tls.T[2][2] 2.9648 _pdbx_refine_tls.T[3][3] 3.8091 _pdbx_refine_tls.T[1][2] 0.6780 _pdbx_refine_tls.T[1][3] 0.3333 _pdbx_refine_tls.T[2][3] -1.0105 _pdbx_refine_tls.L[1][1] 0.8484 _pdbx_refine_tls.L[2][2] 5.5632 _pdbx_refine_tls.L[3][3] 5.4475 _pdbx_refine_tls.L[1][2] 2.3753 _pdbx_refine_tls.L[1][3] -2.1500 _pdbx_refine_tls.L[2][3] -5.4182 _pdbx_refine_tls.S[1][1] -1.9332 _pdbx_refine_tls.S[2][2] 1.2322 _pdbx_refine_tls.S[3][3] 1.1681 _pdbx_refine_tls.S[1][2] -2.6433 _pdbx_refine_tls.S[1][3] 4.5095 _pdbx_refine_tls.S[2][3] 4.1862 _pdbx_refine_tls.S[2][1] 0.2047 _pdbx_refine_tls.S[3][1] -2.3619 _pdbx_refine_tls.S[3][2] -4.4511 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id . _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id . _pdbx_refine_tls_group.end_auth_seq_id 0 _pdbx_refine_tls_group.selection_details 'resid 14:19' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BA P P N R 1 2BA O1P O N N 2 2BA O2P O N N 3 2BA "O5'" O N N 4 2BA "C5'" C N N 5 2BA "C4'" C N R 6 2BA "O4'" O N N 7 2BA "C3'" C N S 8 2BA "O3'" O N N 9 2BA "C2'" C N R 10 2BA "O2'" O N N 11 2BA "C1'" C N R 12 2BA N9 N Y N 13 2BA C8 C Y N 14 2BA N7 N Y N 15 2BA C5 C Y N 16 2BA C6 C Y N 17 2BA N6 N N N 18 2BA N1 N Y N 19 2BA C2 C Y N 20 2BA N3 N Y N 21 2BA C4 C Y N 22 2BA P1 P N R 23 2BA O1P1 O N N 24 2BA O2P1 O N N 25 2BA "O5'1" O N N 26 2BA "C5'1" C N N 27 2BA "C4'1" C N R 28 2BA "O4'1" O N N 29 2BA "C3'1" C N S 30 2BA "O3'1" O N N 31 2BA "C2'1" C N R 32 2BA "O2'1" O N N 33 2BA "C1'1" C N R 34 2BA N91 N Y N 35 2BA C81 C Y N 36 2BA N71 N Y N 37 2BA C51 C Y N 38 2BA C61 C Y N 39 2BA N61 N N N 40 2BA N11 N Y N 41 2BA C21 C Y N 42 2BA N31 N Y N 43 2BA C41 C Y N 44 2BA "H5'" H N N 45 2BA "H5'A" H N N 46 2BA "H4'" H N N 47 2BA "H3'" H N N 48 2BA "H2'" H N N 49 2BA "HO2'" H N N 50 2BA "H1'" H N N 51 2BA H8 H N N 52 2BA HN6 H N N 53 2BA HN6A H N N 54 2BA H2 H N N 55 2BA "HC5'" H N N 56 2BA HC5A H N N 57 2BA "HC4'" H N N 58 2BA "HC3'" H N N 59 2BA "HC2'" H N N 60 2BA HO2A H N N 61 2BA "HC1'" H N N 62 2BA HC8 H N N 63 2BA H1N6 H N N 64 2BA H1NA H N N 65 2BA HC2 H N N 66 2BA H2P H N N 67 2BA H2OP H N N 68 5GP P P N N 69 5GP O1P O N N 70 5GP O2P O N N 71 5GP O3P O N N 72 5GP "O5'" O N N 73 5GP "C5'" C N N 74 5GP "C4'" C N R 75 5GP "O4'" O N N 76 5GP "C3'" C N S 77 5GP "O3'" O N N 78 5GP "C2'" C N R 79 5GP "O2'" O N N 80 5GP "C1'" C N R 81 5GP N9 N Y N 82 5GP C8 C Y N 83 5GP N7 N Y N 84 5GP C5 C Y N 85 5GP C6 C N N 86 5GP O6 O N N 87 5GP N1 N N N 88 5GP C2 C N N 89 5GP N2 N N N 90 5GP N3 N N N 91 5GP C4 C Y N 92 5GP HOP2 H N N 93 5GP HOP3 H N N 94 5GP "H5'1" H N N 95 5GP "H5'2" H N N 96 5GP "H4'" H N N 97 5GP "H3'" H N N 98 5GP "HO3'" H N N 99 5GP "H2'" H N N 100 5GP "HO2'" H N N 101 5GP "H1'" H N N 102 5GP H8 H N N 103 5GP HN1 H N N 104 5GP HN21 H N N 105 5GP HN22 H N N 106 A OP3 O N N 107 A P P N N 108 A OP1 O N N 109 A OP2 O N N 110 A "O5'" O N N 111 A "C5'" C N N 112 A "C4'" C N R 113 A "O4'" O N N 114 A "C3'" C N S 115 A "O3'" O N N 116 A "C2'" C N R 117 A "O2'" O N N 118 A "C1'" C N R 119 A N9 N Y N 120 A C8 C Y N 121 A N7 N Y N 122 A C5 C Y N 123 A C6 C Y N 124 A N6 N N N 125 A N1 N Y N 126 A C2 C Y N 127 A N3 N Y N 128 A C4 C Y N 129 A HOP3 H N N 130 A HOP2 H N N 131 A "H5'" H N N 132 A "H5''" H N N 133 A "H4'" H N N 134 A "H3'" H N N 135 A "HO3'" H N N 136 A "H2'" H N N 137 A "HO2'" H N N 138 A "H1'" H N N 139 A H8 H N N 140 A H61 H N N 141 A H62 H N N 142 A H2 H N N 143 C OP3 O N N 144 C P P N N 145 C OP1 O N N 146 C OP2 O N N 147 C "O5'" O N N 148 C "C5'" C N N 149 C "C4'" C N R 150 C "O4'" O N N 151 C "C3'" C N S 152 C "O3'" O N N 153 C "C2'" C N R 154 C "O2'" O N N 155 C "C1'" C N R 156 C N1 N N N 157 C C2 C N N 158 C O2 O N N 159 C N3 N N N 160 C C4 C N N 161 C N4 N N N 162 C C5 C N N 163 C C6 C N N 164 C HOP3 H N N 165 C HOP2 H N N 166 C "H5'" H N N 167 C "H5''" H N N 168 C "H4'" H N N 169 C "H3'" H N N 170 C "HO3'" H N N 171 C "H2'" H N N 172 C "HO2'" H N N 173 C "H1'" H N N 174 C H41 H N N 175 C H42 H N N 176 C H5 H N N 177 C H6 H N N 178 G OP3 O N N 179 G P P N N 180 G OP1 O N N 181 G OP2 O N N 182 G "O5'" O N N 183 G "C5'" C N N 184 G "C4'" C N R 185 G "O4'" O N N 186 G "C3'" C N S 187 G "O3'" O N N 188 G "C2'" C N R 189 G "O2'" O N N 190 G "C1'" C N R 191 G N9 N Y N 192 G C8 C Y N 193 G N7 N Y N 194 G C5 C Y N 195 G C6 C N N 196 G O6 O N N 197 G N1 N N N 198 G C2 C N N 199 G N2 N N N 200 G N3 N N N 201 G C4 C Y N 202 G HOP3 H N N 203 G HOP2 H N N 204 G "H5'" H N N 205 G "H5''" H N N 206 G "H4'" H N N 207 G "H3'" H N N 208 G "HO3'" H N N 209 G "H2'" H N N 210 G "HO2'" H N N 211 G "H1'" H N N 212 G H8 H N N 213 G H1 H N N 214 G H21 H N N 215 G H22 H N N 216 GTP PG P N N 217 GTP O1G O N N 218 GTP O2G O N N 219 GTP O3G O N N 220 GTP O3B O N N 221 GTP PB P N N 222 GTP O1B O N N 223 GTP O2B O N N 224 GTP O3A O N N 225 GTP PA P N N 226 GTP O1A O N N 227 GTP O2A O N N 228 GTP "O5'" O N N 229 GTP "C5'" C N N 230 GTP "C4'" C N R 231 GTP "O4'" O N N 232 GTP "C3'" C N S 233 GTP "O3'" O N N 234 GTP "C2'" C N R 235 GTP "O2'" O N N 236 GTP "C1'" C N R 237 GTP N9 N Y N 238 GTP C8 C Y N 239 GTP N7 N Y N 240 GTP C5 C Y N 241 GTP C6 C N N 242 GTP O6 O N N 243 GTP N1 N N N 244 GTP C2 C N N 245 GTP N2 N N N 246 GTP N3 N N N 247 GTP C4 C Y N 248 GTP HOG2 H N N 249 GTP HOG3 H N N 250 GTP HOB2 H N N 251 GTP HOA2 H N N 252 GTP "H5'" H N N 253 GTP "H5''" H N N 254 GTP "H4'" H N N 255 GTP "H3'" H N N 256 GTP "HO3'" H N N 257 GTP "H2'" H N N 258 GTP "HO2'" H N N 259 GTP "H1'" H N N 260 GTP H8 H N N 261 GTP HN1 H N N 262 GTP HN21 H N N 263 GTP HN22 H N N 264 HOH O O N N 265 HOH H1 H N N 266 HOH H2 H N N 267 K K K N N 268 MG MG MG N N 269 SO4 S S N N 270 SO4 O1 O N N 271 SO4 O2 O N N 272 SO4 O3 O N N 273 SO4 O4 O N N 274 U OP3 O N N 275 U P P N N 276 U OP1 O N N 277 U OP2 O N N 278 U "O5'" O N N 279 U "C5'" C N N 280 U "C4'" C N R 281 U "O4'" O N N 282 U "C3'" C N S 283 U "O3'" O N N 284 U "C2'" C N R 285 U "O2'" O N N 286 U "C1'" C N R 287 U N1 N N N 288 U C2 C N N 289 U O2 O N N 290 U N3 N N N 291 U C4 C N N 292 U O4 O N N 293 U C5 C N N 294 U C6 C N N 295 U HOP3 H N N 296 U HOP2 H N N 297 U "H5'" H N N 298 U "H5''" H N N 299 U "H4'" H N N 300 U "H3'" H N N 301 U "HO3'" H N N 302 U "H2'" H N N 303 U "HO2'" H N N 304 U "H1'" H N N 305 U H3 H N N 306 U H5 H N N 307 U H6 H N N 308 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BA P O1P doub N N 1 2BA P O2P sing N N 2 2BA P "O5'" sing N N 3 2BA P "O3'1" sing N N 4 2BA "O5'" "C5'" sing N N 5 2BA "C5'" "C4'" sing N N 6 2BA "C4'" "O4'" sing N N 7 2BA "C4'" "C3'" sing N N 8 2BA "O4'" "C1'" sing N N 9 2BA "C3'" "O3'" sing N N 10 2BA "C3'" "C2'" sing N N 11 2BA "O3'" P1 sing N N 12 2BA "C2'" "O2'" sing N N 13 2BA "C2'" "C1'" sing N N 14 2BA "C1'" N9 sing N N 15 2BA N9 C8 sing Y N 16 2BA N9 C4 sing Y N 17 2BA C8 N7 doub Y N 18 2BA N7 C5 sing Y N 19 2BA C5 C6 doub Y N 20 2BA C5 C4 sing Y N 21 2BA C6 N6 sing N N 22 2BA C6 N1 sing Y N 23 2BA N1 C2 doub Y N 24 2BA C2 N3 sing Y N 25 2BA N3 C4 doub Y N 26 2BA P1 O1P1 doub N N 27 2BA P1 O2P1 sing N N 28 2BA P1 "O5'1" sing N N 29 2BA "O5'1" "C5'1" sing N N 30 2BA "C5'1" "C4'1" sing N N 31 2BA "C4'1" "O4'1" sing N N 32 2BA "C4'1" "C3'1" sing N N 33 2BA "O4'1" "C1'1" sing N N 34 2BA "C3'1" "O3'1" sing N N 35 2BA "C3'1" "C2'1" sing N N 36 2BA "C2'1" "O2'1" sing N N 37 2BA "C2'1" "C1'1" sing N N 38 2BA "C1'1" N91 sing N N 39 2BA N91 C81 sing Y N 40 2BA N91 C41 sing Y N 41 2BA C81 N71 doub Y N 42 2BA N71 C51 sing Y N 43 2BA C51 C61 doub Y N 44 2BA C51 C41 sing Y N 45 2BA C61 N61 sing N N 46 2BA C61 N11 sing Y N 47 2BA N11 C21 doub Y N 48 2BA C21 N31 sing Y N 49 2BA N31 C41 doub Y N 50 2BA "C5'" "H5'" sing N N 51 2BA "C5'" "H5'A" sing N N 52 2BA "C4'" "H4'" sing N N 53 2BA "C3'" "H3'" sing N N 54 2BA "C2'" "H2'" sing N N 55 2BA "O2'" "HO2'" sing N N 56 2BA "C1'" "H1'" sing N N 57 2BA C8 H8 sing N N 58 2BA N6 HN6 sing N N 59 2BA N6 HN6A sing N N 60 2BA C2 H2 sing N N 61 2BA "C5'1" "HC5'" sing N N 62 2BA "C5'1" HC5A sing N N 63 2BA "C4'1" "HC4'" sing N N 64 2BA "C3'1" "HC3'" sing N N 65 2BA "C2'1" "HC2'" sing N N 66 2BA "O2'1" HO2A sing N N 67 2BA "C1'1" "HC1'" sing N N 68 2BA C81 HC8 sing N N 69 2BA N61 H1N6 sing N N 70 2BA N61 H1NA sing N N 71 2BA C21 HC2 sing N N 72 2BA O2P H2P sing N N 73 2BA O2P1 H2OP sing N N 74 5GP P O1P doub N N 75 5GP P O2P sing N N 76 5GP P O3P sing N N 77 5GP P "O5'" sing N N 78 5GP O2P HOP2 sing N N 79 5GP O3P HOP3 sing N N 80 5GP "O5'" "C5'" sing N N 81 5GP "C5'" "C4'" sing N N 82 5GP "C5'" "H5'1" sing N N 83 5GP "C5'" "H5'2" sing N N 84 5GP "C4'" "O4'" sing N N 85 5GP "C4'" "C3'" sing N N 86 5GP "C4'" "H4'" sing N N 87 5GP "O4'" "C1'" sing N N 88 5GP "C3'" "O3'" sing N N 89 5GP "C3'" "C2'" sing N N 90 5GP "C3'" "H3'" sing N N 91 5GP "O3'" "HO3'" sing N N 92 5GP "C2'" "O2'" sing N N 93 5GP "C2'" "C1'" sing N N 94 5GP "C2'" "H2'" sing N N 95 5GP "O2'" "HO2'" sing N N 96 5GP "C1'" N9 sing N N 97 5GP "C1'" "H1'" sing N N 98 5GP N9 C8 sing Y N 99 5GP N9 C4 sing Y N 100 5GP C8 N7 doub Y N 101 5GP C8 H8 sing N N 102 5GP N7 C5 sing Y N 103 5GP C5 C6 sing N N 104 5GP C5 C4 doub Y N 105 5GP C6 O6 doub N N 106 5GP C6 N1 sing N N 107 5GP N1 C2 sing N N 108 5GP N1 HN1 sing N N 109 5GP C2 N2 sing N N 110 5GP C2 N3 doub N N 111 5GP N2 HN21 sing N N 112 5GP N2 HN22 sing N N 113 5GP N3 C4 sing N N 114 A OP3 P sing N N 115 A OP3 HOP3 sing N N 116 A P OP1 doub N N 117 A P OP2 sing N N 118 A P "O5'" sing N N 119 A OP2 HOP2 sing N N 120 A "O5'" "C5'" sing N N 121 A "C5'" "C4'" sing N N 122 A "C5'" "H5'" sing N N 123 A "C5'" "H5''" sing N N 124 A "C4'" "O4'" sing N N 125 A "C4'" "C3'" sing N N 126 A "C4'" "H4'" sing N N 127 A "O4'" "C1'" sing N N 128 A "C3'" "O3'" sing N N 129 A "C3'" "C2'" sing N N 130 A "C3'" "H3'" sing N N 131 A "O3'" "HO3'" sing N N 132 A "C2'" "O2'" sing N N 133 A "C2'" "C1'" sing N N 134 A "C2'" "H2'" sing N N 135 A "O2'" "HO2'" sing N N 136 A "C1'" N9 sing N N 137 A "C1'" "H1'" sing N N 138 A N9 C8 sing Y N 139 A N9 C4 sing Y N 140 A C8 N7 doub Y N 141 A C8 H8 sing N N 142 A N7 C5 sing Y N 143 A C5 C6 sing Y N 144 A C5 C4 doub Y N 145 A C6 N6 sing N N 146 A C6 N1 doub Y N 147 A N6 H61 sing N N 148 A N6 H62 sing N N 149 A N1 C2 sing Y N 150 A C2 N3 doub Y N 151 A C2 H2 sing N N 152 A N3 C4 sing Y N 153 C OP3 P sing N N 154 C OP3 HOP3 sing N N 155 C P OP1 doub N N 156 C P OP2 sing N N 157 C P "O5'" sing N N 158 C OP2 HOP2 sing N N 159 C "O5'" "C5'" sing N N 160 C "C5'" "C4'" sing N N 161 C "C5'" "H5'" sing N N 162 C "C5'" "H5''" sing N N 163 C "C4'" "O4'" sing N N 164 C "C4'" "C3'" sing N N 165 C "C4'" "H4'" sing N N 166 C "O4'" "C1'" sing N N 167 C "C3'" "O3'" sing N N 168 C "C3'" "C2'" sing N N 169 C "C3'" "H3'" sing N N 170 C "O3'" "HO3'" sing N N 171 C "C2'" "O2'" sing N N 172 C "C2'" "C1'" sing N N 173 C "C2'" "H2'" sing N N 174 C "O2'" "HO2'" sing N N 175 C "C1'" N1 sing N N 176 C "C1'" "H1'" sing N N 177 C N1 C2 sing N N 178 C N1 C6 sing N N 179 C C2 O2 doub N N 180 C C2 N3 sing N N 181 C N3 C4 doub N N 182 C C4 N4 sing N N 183 C C4 C5 sing N N 184 C N4 H41 sing N N 185 C N4 H42 sing N N 186 C C5 C6 doub N N 187 C C5 H5 sing N N 188 C C6 H6 sing N N 189 G OP3 P sing N N 190 G OP3 HOP3 sing N N 191 G P OP1 doub N N 192 G P OP2 sing N N 193 G P "O5'" sing N N 194 G OP2 HOP2 sing N N 195 G "O5'" "C5'" sing N N 196 G "C5'" "C4'" sing N N 197 G "C5'" "H5'" sing N N 198 G "C5'" "H5''" sing N N 199 G "C4'" "O4'" sing N N 200 G "C4'" "C3'" sing N N 201 G "C4'" "H4'" sing N N 202 G "O4'" "C1'" sing N N 203 G "C3'" "O3'" sing N N 204 G "C3'" "C2'" sing N N 205 G "C3'" "H3'" sing N N 206 G "O3'" "HO3'" sing N N 207 G "C2'" "O2'" sing N N 208 G "C2'" "C1'" sing N N 209 G "C2'" "H2'" sing N N 210 G "O2'" "HO2'" sing N N 211 G "C1'" N9 sing N N 212 G "C1'" "H1'" sing N N 213 G N9 C8 sing Y N 214 G N9 C4 sing Y N 215 G C8 N7 doub Y N 216 G C8 H8 sing N N 217 G N7 C5 sing Y N 218 G C5 C6 sing N N 219 G C5 C4 doub Y N 220 G C6 O6 doub N N 221 G C6 N1 sing N N 222 G N1 C2 sing N N 223 G N1 H1 sing N N 224 G C2 N2 sing N N 225 G C2 N3 doub N N 226 G N2 H21 sing N N 227 G N2 H22 sing N N 228 G N3 C4 sing N N 229 GTP PG O1G doub N N 230 GTP PG O2G sing N N 231 GTP PG O3G sing N N 232 GTP PG O3B sing N N 233 GTP O2G HOG2 sing N N 234 GTP O3G HOG3 sing N N 235 GTP O3B PB sing N N 236 GTP PB O1B doub N N 237 GTP PB O2B sing N N 238 GTP PB O3A sing N N 239 GTP O2B HOB2 sing N N 240 GTP O3A PA sing N N 241 GTP PA O1A doub N N 242 GTP PA O2A sing N N 243 GTP PA "O5'" sing N N 244 GTP O2A HOA2 sing N N 245 GTP "O5'" "C5'" sing N N 246 GTP "C5'" "C4'" sing N N 247 GTP "C5'" "H5'" sing N N 248 GTP "C5'" "H5''" sing N N 249 GTP "C4'" "O4'" sing N N 250 GTP "C4'" "C3'" sing N N 251 GTP "C4'" "H4'" sing N N 252 GTP "O4'" "C1'" sing N N 253 GTP "C3'" "O3'" sing N N 254 GTP "C3'" "C2'" sing N N 255 GTP "C3'" "H3'" sing N N 256 GTP "O3'" "HO3'" sing N N 257 GTP "C2'" "O2'" sing N N 258 GTP "C2'" "C1'" sing N N 259 GTP "C2'" "H2'" sing N N 260 GTP "O2'" "HO2'" sing N N 261 GTP "C1'" N9 sing N N 262 GTP "C1'" "H1'" sing N N 263 GTP N9 C8 sing Y N 264 GTP N9 C4 sing Y N 265 GTP C8 N7 doub Y N 266 GTP C8 H8 sing N N 267 GTP N7 C5 sing Y N 268 GTP C5 C6 sing N N 269 GTP C5 C4 doub Y N 270 GTP C6 O6 doub N N 271 GTP C6 N1 sing N N 272 GTP N1 C2 sing N N 273 GTP N1 HN1 sing N N 274 GTP C2 N2 sing N N 275 GTP C2 N3 doub N N 276 GTP N2 HN21 sing N N 277 GTP N2 HN22 sing N N 278 GTP N3 C4 sing N N 279 HOH O H1 sing N N 280 HOH O H2 sing N N 281 SO4 S O1 doub N N 282 SO4 S O2 doub N N 283 SO4 S O3 sing N N 284 SO4 S O4 sing N N 285 U OP3 P sing N N 286 U OP3 HOP3 sing N N 287 U P OP1 doub N N 288 U P OP2 sing N N 289 U P "O5'" sing N N 290 U OP2 HOP2 sing N N 291 U "O5'" "C5'" sing N N 292 U "C5'" "C4'" sing N N 293 U "C5'" "H5'" sing N N 294 U "C5'" "H5''" sing N N 295 U "C4'" "O4'" sing N N 296 U "C4'" "C3'" sing N N 297 U "C4'" "H4'" sing N N 298 U "O4'" "C1'" sing N N 299 U "C3'" "O3'" sing N N 300 U "C3'" "C2'" sing N N 301 U "C3'" "H3'" sing N N 302 U "O3'" "HO3'" sing N N 303 U "C2'" "O2'" sing N N 304 U "C2'" "C1'" sing N N 305 U "C2'" "H2'" sing N N 306 U "O2'" "HO2'" sing N N 307 U "C1'" N1 sing N N 308 U "C1'" "H1'" sing N N 309 U N1 C2 sing N N 310 U N1 C6 sing N N 311 U C2 O2 doub N N 312 U C2 N3 sing N N 313 U N3 C4 sing N N 314 U N3 H3 sing N N 315 U C4 O4 doub N N 316 U C4 C5 sing N N 317 U C5 C6 doub N N 318 U C5 H5 sing N N 319 U C6 H6 sing N N 320 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6N5S 'double helix' 6N5S 'a-form double helix' 6N5S 'hairpin loop' 6N5S 'mismatched base pair' 6N5S 'internal loop' 6N5S 'quadruple helix' 6N5S 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 4 1_555 A A 111 1_555 -0.328 -0.125 0.039 9.771 -14.496 -2.644 1 A_U4:A111_A A 4 ? A 111 ? 20 1 1 A G 5 1_555 A C 110 1_555 -0.030 -0.032 -0.210 -6.541 -12.584 2.026 2 A_G5:C110_A A 5 ? A 110 ? 19 1 1 A C 6 1_555 A G 109 1_555 0.582 -0.073 -0.254 4.992 -3.200 6.320 3 A_C6:G109_A A 6 ? A 109 ? 19 1 1 A C 7 1_555 A G 108 1_555 0.454 -0.211 -0.373 13.333 7.578 -1.010 4 A_C7:G108_A A 7 ? A 108 ? 19 1 1 A G 8 1_555 A A 107 1_555 6.640 -4.022 0.361 30.977 6.398 -1.824 5 A_G8:A107_A A 8 ? A 107 ? 11 9 1 A U 19 1_555 A A 14 1_555 -0.275 -0.526 0.346 -1.717 -6.506 -3.670 6 A_U19:A14_A A 19 ? A 14 ? 20 1 1 A G 20 1_555 A C 13 1_555 -0.553 -0.566 -0.299 -2.625 -3.691 -0.996 7 A_G20:C13_A A 20 ? A 13 ? 19 1 1 A G 21 1_555 A C 12 1_555 0.554 -0.274 -0.669 -4.589 -7.907 -3.453 8 A_G21:C12_A A 21 ? A 12 ? 19 1 1 A U 22 1_555 A U 11 1_555 2.391 -2.119 -0.215 -2.193 -6.454 13.377 9 A_U22:U11_A A 22 ? A 11 ? 16 1 1 A A 23 1_555 A G 106 1_555 -6.994 -4.783 -0.015 1.952 -11.887 -13.094 10 A_A23:G106_A A 23 ? A 106 ? 11 10 1 A C 24 1_555 A G 105 1_555 -0.171 -0.187 -0.134 4.584 -7.453 0.720 11 A_C24:G105_A A 24 ? A 105 ? 19 1 1 A G 25 1_555 A C 104 1_555 0.110 -0.176 -0.587 -10.980 -5.018 2.581 12 A_G25:C104_A A 25 ? A 104 ? 19 1 1 A G 26 1_555 A C 103 1_555 -0.155 -0.102 -0.266 -4.700 3.883 -0.700 13 A_G26:C103_A A 26 ? A 103 ? 19 1 1 A A 27 1_555 A U 102 1_555 -0.113 -0.054 -0.086 -0.780 1.108 0.756 14 A_A27:U102_A A 27 ? A 102 ? 20 1 1 A G 28 1_555 A C 101 1_555 -0.097 -0.211 -0.219 -5.191 -9.840 1.088 15 A_G28:C101_A A 28 ? A 101 ? 19 1 1 A G 29 1_555 A A 100 1_555 6.851 -4.154 -0.089 -7.018 -8.023 -7.578 16 A_G29:A100_A A 29 ? A 100 ? 11 10 1 A C 32 1_555 A C 97 1_555 -3.846 -1.789 0.237 2.568 -12.732 4.970 17 A_C32:C97_A A 32 ? A 97 ? ? 1 1 A C 33 1_555 A G 96 1_555 0.265 -0.106 0.053 9.254 -8.161 1.650 18 A_C33:G96_A A 33 ? A 96 ? 19 1 1 A C 87 1_555 A U 46 1_555 -7.018 -4.772 0.831 -26.639 9.028 -6.316 19 A_C87:U46_A A 87 ? A 46 ? ? ? 1 A A 88 1_555 A U 45 1_555 0.027 -0.010 -0.337 -11.997 13.667 -1.084 20 A_A88:U45_A A 88 ? A 45 ? 20 1 1 A C 89 1_555 A G 44 1_555 -0.028 -0.295 -0.283 6.426 4.791 -1.123 21 A_C89:G44_A A 89 ? A 44 ? 19 1 1 A C 90 1_555 A G 43 1_555 0.340 -0.161 -0.624 9.785 -8.466 4.616 22 A_C90:G43_A A 90 ? A 43 ? 19 1 1 A C 91 1_555 A G 42 1_555 0.324 -0.079 -0.162 0.678 6.153 2.271 23 A_C91:G42_A A 91 ? A 42 ? 19 1 1 A C 94 1_555 A G 41 1_555 0.123 -0.235 -0.078 -2.973 0.434 -1.723 24 A_C94:G41_A A 94 ? A 41 ? 19 1 1 A A 93 1_555 A U 39 1_555 -0.004 -0.194 0.112 6.584 -2.381 -2.380 25 A_A93:U39_A A 93 ? A 39 ? 20 1 1 A A 59 1_555 A U 56 1_555 -5.387 -2.757 0.874 -29.842 48.064 -62.425 26 A_A59:U56_A A 59 ? A 56 ? ? ? 1 A C 61 1_555 A G 55 1_555 0.348 -0.495 1.186 11.685 2.404 1.361 27 A_C61:G55_A A 61 ? A 55 ? 19 1 1 A U 62 1_555 A A 54 1_555 -1.154 0.137 0.199 11.183 -10.057 7.893 28 A_U62:A54_A A 62 ? A 54 ? 20 1 1 A G 63 1_555 A C 53 1_555 -0.926 0.075 -0.707 -4.927 6.881 12.410 29 A_G63:C53_A A 63 ? A 53 ? 19 1 1 A C 64 1_555 A G 52 1_555 0.434 -0.196 -0.802 -0.301 -15.955 -16.353 30 A_C64:G52_A A 64 ? A 52 ? ? 1 1 A A 65 1_555 A U 51 1_555 0.712 -0.259 0.117 -8.121 -10.156 -2.494 31 A_A65:U51_A A 65 ? A 51 ? 20 1 1 A G 66 1_555 A C 50 1_555 0.115 -0.201 -0.646 -11.445 -15.852 2.402 32 A_G66:C50_A A 66 ? A 50 ? 19 1 1 A U 67 1_555 A U 49 1_555 2.418 -1.823 -0.071 1.998 -16.938 15.390 33 A_U67:U49_A A 67 ? A 49 ? 16 1 1 A A 68 1_555 A G 86 1_555 -6.930 -4.404 -0.083 -4.707 -5.072 -10.244 34 A_A68:G86_A A 68 ? A 86 ? 11 10 1 A G 69 1_555 A C 85 1_555 -0.220 -0.319 -0.201 2.016 -3.498 2.537 35 A_G69:C85_A A 69 ? A 85 ? 19 1 1 A G 70 1_555 A C 84 1_555 -0.134 -0.225 -0.397 -8.261 -9.082 2.762 36 A_G70:C84_A A 70 ? A 84 ? 19 1 1 A G 71 1_555 A C 83 1_555 0.228 -0.032 -0.109 -2.620 -0.407 -1.469 37 A_G71:C83_A A 71 ? A 83 ? 19 1 1 A A 72 1_555 A U 82 1_555 0.016 -0.043 -0.411 -0.391 -6.631 -1.366 38 A_A72:U82_A A 72 ? A 82 ? 20 1 1 A U 73 1_555 A G 81 1_555 2.181 -0.581 -0.588 15.776 -5.084 1.248 39 A_U73:G81_A A 73 ? A 81 ? 28 1 1 A G 117 1_555 A U 80 1_555 -2.368 -0.748 -0.189 0.721 -8.751 -3.845 40 A_G117:U80_A A 117 ? A 80 ? 28 1 1 A G 118 1_555 A C 79 1_555 -0.073 -0.106 -0.380 -6.894 -15.296 1.837 41 A_G118:C79_A A 118 ? A 79 ? 19 1 1 A A 119 1_555 A U 78 1_555 0.123 -0.019 -0.037 -6.306 -12.391 3.282 42 A_A119:U78_A A 119 ? A 78 ? 20 1 1 A A 120 1_555 A U 77 1_555 0.037 0.052 0.325 -4.600 -4.429 -4.357 43 A_A120:U77_A A 120 ? A 77 ? 20 1 1 A G 121 1_555 A C 76 1_555 -0.290 -0.222 0.144 -0.208 -10.326 -2.302 44 A_G121:C76_A A 121 ? A 76 ? 19 1 1 A G 122 1_555 A C 75 1_555 -0.126 -0.268 -0.448 -13.214 -19.255 2.083 45 A_G122:C75_A A 122 ? A 75 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 4 1_555 A A 111 1_555 A G 5 1_555 A C 110 1_555 0.578 -1.687 3.657 -1.271 7.374 37.049 -3.621 -1.068 3.253 11.462 1.975 37.772 1 AA_U4G5:C110A111_AA A 4 ? A 111 ? A 5 ? A 110 ? 1 A G 5 1_555 A C 110 1_555 A C 6 1_555 A G 109 1_555 -0.693 -2.182 3.009 -4.319 1.195 28.381 -4.645 0.502 2.987 2.418 8.740 28.726 2 AA_G5C6:G109C110_AA A 5 ? A 110 ? A 6 ? A 109 ? 1 A C 6 1_555 A G 109 1_555 A C 7 1_555 A G 108 1_555 -0.947 -2.090 3.308 -1.535 3.371 25.692 -5.565 1.695 3.063 7.531 3.429 25.953 3 AA_C6C7:G108G109_AA A 6 ? A 109 ? A 7 ? A 108 ? 1 A C 7 1_555 A G 108 1_555 A G 8 1_555 A A 107 1_555 -0.609 -0.834 3.028 -1.010 9.330 47.223 -1.687 0.675 2.835 11.513 1.246 48.094 4 AA_C7G8:A107G108_AA A 7 ? A 108 ? A 8 ? A 107 ? 1 A U 19 1_555 A A 14 1_555 A G 20 1_555 A C 13 1_555 -0.240 -1.424 3.011 3.308 12.060 32.218 -3.979 0.838 2.311 20.782 -5.700 34.500 5 AA_U19G20:C13A14_AA A 19 ? A 14 ? A 20 ? A 13 ? 1 A G 20 1_555 A C 13 1_555 A G 21 1_555 A C 12 1_555 0.256 -2.085 3.608 -1.295 4.771 31.337 -4.741 -0.720 3.250 8.764 2.379 31.714 6 AA_G20G21:C12C13_AA A 20 ? A 13 ? A 21 ? A 12 ? 1 A G 21 1_555 A C 12 1_555 A U 22 1_555 A U 11 1_555 0.357 -1.864 3.375 -5.230 3.097 36.868 -3.320 -1.249 3.136 4.857 8.201 37.349 7 AA_G21U22:U11C12_AA A 21 ? A 12 ? A 22 ? A 11 ? 1 A U 22 1_555 A U 11 1_555 A A 23 1_555 A G 106 1_555 0.280 0.097 3.168 -3.099 3.599 21.402 -1.093 -1.895 3.072 9.541 8.214 21.917 8 AA_U22A23:G106U11_AA A 22 ? A 11 ? A 23 ? A 106 ? 1 A A 23 1_555 A G 106 1_555 A C 24 1_555 A G 105 1_555 1.484 -0.951 3.359 -0.212 5.918 62.402 -1.186 -1.437 3.262 5.698 0.204 62.654 9 AA_A23C24:G105G106_AA A 23 ? A 106 ? A 24 ? A 105 ? 1 A C 24 1_555 A G 105 1_555 A G 25 1_555 A C 104 1_555 0.996 -2.500 3.824 6.184 6.309 29.714 -6.050 -0.523 3.369 11.974 -11.736 30.971 10 AA_C24G25:C104G105_AA A 24 ? A 105 ? A 25 ? A 104 ? 1 A G 25 1_555 A C 104 1_555 A G 26 1_555 A C 103 1_555 -0.934 -2.402 3.115 -4.321 2.959 25.379 -6.125 0.965 2.936 6.644 9.703 25.905 11 AA_G25G26:C103C104_AA A 25 ? A 104 ? A 26 ? A 103 ? 1 A G 26 1_555 A C 103 1_555 A A 27 1_555 A U 102 1_555 0.031 -2.021 3.285 -2.509 0.179 29.222 -4.031 -0.602 3.259 0.353 4.961 29.328 12 AA_G26A27:U102C103_AA A 26 ? A 103 ? A 27 ? A 102 ? 1 A A 27 1_555 A U 102 1_555 A G 28 1_555 A C 101 1_555 0.149 -1.966 3.543 2.968 0.107 31.825 -3.592 0.312 3.536 0.194 -5.397 31.959 13 AA_A27G28:C101U102_AA A 27 ? A 102 ? A 28 ? A 101 ? 1 A G 28 1_555 A C 101 1_555 A G 29 1_555 A A 100 1_555 -1.086 -0.944 3.492 1.426 7.445 61.251 -1.285 1.129 3.345 7.277 -1.394 61.673 14 AA_G28G29:A100C101_AA A 28 ? A 101 ? A 29 ? A 100 ? 1 A C 32 1_555 A C 97 1_555 A C 33 1_555 A G 96 1_555 0.110 -0.778 3.184 -0.789 3.652 48.931 -1.203 -0.190 3.120 4.401 0.951 49.064 15 AA_C32C33:G96C97_AA A 32 ? A 97 ? A 33 ? A 96 ? 1 A C 87 1_555 A U 46 1_555 A A 88 1_555 A U 45 1_555 0.874 -0.874 2.994 -0.805 13.964 53.371 -1.679 -0.988 2.693 15.253 0.879 55.043 16 AA_C87A88:U45U46_AA A 87 ? A 46 ? A 88 ? A 45 ? 1 A A 88 1_555 A U 45 1_555 A C 89 1_555 A G 44 1_555 0.327 -2.027 3.016 1.104 0.045 26.360 -4.452 -0.445 3.024 0.098 -2.420 26.382 17 AA_A88C89:G44U45_AA A 88 ? A 45 ? A 89 ? A 44 ? 1 A C 89 1_555 A G 44 1_555 A C 90 1_555 A G 43 1_555 0.964 -2.084 3.369 5.174 -0.176 29.079 -4.050 -0.729 3.496 -0.347 -10.203 29.527 18 AA_C89C90:G43G44_AA A 89 ? A 44 ? A 90 ? A 43 ? 1 A C 90 1_555 A G 43 1_555 A C 91 1_555 A G 42 1_555 -0.742 -2.287 3.733 -4.351 3.459 28.429 -5.429 0.408 3.508 6.960 8.753 28.956 19 AA_C90C91:G42G43_AA A 90 ? A 43 ? A 91 ? A 42 ? 1 A C 91 1_555 A G 42 1_555 A C 94 1_555 A G 41 1_555 -2.932 -1.223 3.308 -2.589 0.210 49.159 -1.484 3.320 3.444 0.252 3.109 49.224 20 AA_C91C94:G41G42_AA A 91 ? A 42 ? A 94 ? A 41 ? 1 A C 94 1_555 A G 41 1_555 A A 93 1_555 A U 39 1_555 0.340 -3.859 3.153 3.669 -0.877 -9.928 22.153 7.289 2.514 4.842 20.265 -10.619 21 AA_C94A93:U39G41_AA A 94 ? A 41 ? A 93 ? A 39 ? 1 A A 59 1_555 A U 56 1_555 A C 61 1_555 A G 55 1_555 1.319 -3.676 4.607 0.906 27.871 56.599 -5.045 -1.221 2.721 27.625 -0.898 62.582 22 AA_A59C61:G55U56_AA A 59 ? A 56 ? A 61 ? A 55 ? 1 A C 61 1_555 A G 55 1_555 A U 62 1_555 A A 54 1_555 0.753 -1.905 3.037 8.669 8.840 27.108 -5.333 0.125 2.432 17.732 -17.389 29.753 23 AA_C61U62:A54G55_AA A 61 ? A 55 ? A 62 ? A 54 ? 1 A U 62 1_555 A A 54 1_555 A G 63 1_555 A C 53 1_555 0.052 -1.448 3.573 -3.328 21.183 32.069 -4.769 -0.482 2.218 34.013 5.343 38.420 24 AA_U62G63:C53A54_AA A 62 ? A 54 ? A 63 ? A 53 ? 1 A G 63 1_555 A C 53 1_555 A C 64 1_555 A G 52 1_555 -1.211 -2.116 3.327 -0.567 9.098 36.425 -4.415 1.813 2.755 14.281 0.891 37.510 25 AA_G63C64:G52C53_AA A 63 ? A 53 ? A 64 ? A 52 ? 1 A C 64 1_555 A G 52 1_555 A A 65 1_555 A U 51 1_555 0.468 -0.954 3.533 -7.177 17.400 34.302 -3.549 -1.576 2.625 27.122 11.188 38.990 26 AA_C64A65:U51G52_AA A 64 ? A 52 ? A 65 ? A 51 ? 1 A A 65 1_555 A U 51 1_555 A G 66 1_555 A C 50 1_555 0.509 -2.543 3.550 4.476 5.039 18.569 -9.834 0.662 2.812 14.991 -13.315 19.744 27 AA_A65G66:C50U51_AA A 65 ? A 51 ? A 66 ? A 50 ? 1 A G 66 1_555 A C 50 1_555 A U 67 1_555 A U 49 1_555 0.473 -0.789 3.012 -5.827 0.622 43.858 -1.101 -1.124 2.918 0.828 7.759 44.229 28 AA_G66U67:U49C50_AA A 66 ? A 50 ? A 67 ? A 49 ? 1 A U 67 1_555 A U 49 1_555 A A 68 1_555 A G 86 1_555 0.405 0.043 3.574 -8.897 1.219 24.513 -0.263 -3.506 3.228 2.756 20.111 26.082 29 AA_U67A68:G86U49_AA A 67 ? A 49 ? A 68 ? A 86 ? 1 A A 68 1_555 A G 86 1_555 A G 69 1_555 A C 85 1_555 1.006 -0.965 3.246 -0.405 3.481 57.014 -1.197 -1.074 3.181 3.643 0.424 57.112 30 AA_A68G69:C85G86_AA A 68 ? A 86 ? A 69 ? A 85 ? 1 A G 69 1_555 A C 85 1_555 A G 70 1_555 A C 84 1_555 0.666 -2.160 3.527 3.176 5.080 30.891 -4.969 -0.613 3.191 9.426 -5.892 31.452 31 AA_G69G70:C84C85_AA A 69 ? A 85 ? A 70 ? A 84 ? 1 A G 70 1_555 A C 84 1_555 A G 71 1_555 A C 83 1_555 -1.398 -2.343 3.074 -5.633 4.767 27.518 -5.771 1.653 2.859 9.799 11.580 28.472 32 AA_G70G71:C83C84_AA A 70 ? A 84 ? A 71 ? A 83 ? 1 A G 71 1_555 A C 83 1_555 A A 72 1_555 A U 82 1_555 -0.344 -1.784 3.300 -0.203 4.786 31.366 -4.117 0.593 3.003 8.788 0.374 31.721 33 AA_G71A72:U82C83_AA A 71 ? A 83 ? A 72 ? A 82 ? 1 A A 72 1_555 A U 82 1_555 A U 73 1_555 A G 81 1_555 0.183 -1.421 2.924 1.069 3.479 36.352 -2.688 -0.163 2.785 5.558 -1.709 36.528 34 AA_A72U73:G81U82_AA A 72 ? A 82 ? A 73 ? A 81 ? 1 A U 73 1_555 A G 81 1_555 A G 117 1_555 A U 80 1_555 -2.918 -0.895 3.369 -10.859 12.477 34.193 -3.174 2.933 3.577 19.846 17.273 37.875 35 AA_U73G117:U80G81_AA A 73 ? A 81 ? A 117 ? A 80 ? 1 A G 117 1_555 A U 80 1_555 A G 118 1_555 A C 79 1_555 0.011 -1.282 3.601 0.513 5.372 42.639 -2.324 0.039 3.422 7.352 -0.702 42.963 36 AA_G117G118:C79U80_AA A 117 ? A 80 ? A 118 ? A 79 ? 1 A G 118 1_555 A C 79 1_555 A A 119 1_555 A U 78 1_555 0.126 -1.368 3.185 -1.611 7.182 33.047 -3.428 -0.458 2.824 12.435 2.789 33.834 37 AA_G118A119:U78C79_AA A 118 ? A 79 ? A 119 ? A 78 ? 1 A A 119 1_555 A U 78 1_555 A A 120 1_555 A U 77 1_555 -0.584 -1.331 3.141 -1.995 9.241 33.077 -3.571 0.704 2.711 15.833 3.418 34.365 38 AA_A119A120:U77U78_AA A 119 ? A 78 ? A 120 ? A 77 ? 1 A A 120 1_555 A U 77 1_555 A G 121 1_555 A C 76 1_555 0.401 -1.270 3.237 1.718 11.206 30.672 -4.062 -0.437 2.641 20.332 -3.117 32.653 39 AA_A120G121:C76U77_AA A 120 ? A 77 ? A 121 ? A 76 ? 1 A G 121 1_555 A C 76 1_555 A G 122 1_555 A C 75 1_555 0.896 -2.054 3.637 5.417 8.709 31.088 -5.236 -0.605 3.074 15.721 -9.779 32.696 40 AA_G121G122:C75C76_AA A 121 ? A 76 ? A 122 ? A 75 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1616265 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QK8 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6N5S _atom_sites.fract_transf_matrix[1][1] 0.008729 _atom_sites.fract_transf_matrix[1][2] 0.005040 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010079 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008691 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P S # loop_