HEADER RNA 22-NOV-18 6N5S TITLE STRUCTURE OF HUMAN PIR-MIRNA-320B-2 APICAL LOOP AND ONE-BASE-PAIR STEM TITLE 2 FUSED TO THE YDAO RIBOSWITCH SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (123-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 905932 KEYWDS MICRORNA, RNA PROCESSING, PROTEIN-RNA INTERACTION, RNA EXPDTA X-RAY DIFFRACTION AUTHOR G.M.SHOFFNER,Z.PENG,F.GUO REVDAT 3 16-OCT-24 6N5S 1 REMARK HET HETNAM FORMUL REVDAT 3 2 1 ATOM REVDAT 2 11-OCT-23 6N5S 1 COMPND HETNAM REVDAT 1 27-NOV-19 6N5S 0 JRNL AUTH G.M.SHOFFNER,Z.PENG,F.GUO JRNL TITL THREE-DIMENSIONAL STRUCTURES OF PRI-MIRNA APICAL JUNCTIONS JRNL TITL 2 AND LOOPS REVEALED BY SCAFFOLD-DIRECTED CRYSTALLOGRAPHY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.1639 - 7.0599 1.00 1318 147 0.1578 0.2027 REMARK 3 2 7.0599 - 5.6042 1.00 1257 140 0.1479 0.1572 REMARK 3 3 5.6042 - 4.8960 1.00 1257 139 0.1357 0.1566 REMARK 3 4 4.8960 - 4.4484 1.00 1242 138 0.1464 0.1546 REMARK 3 5 4.4484 - 4.1296 1.00 1224 137 0.1510 0.1758 REMARK 3 6 4.1296 - 3.8861 1.00 1228 136 0.1728 0.2142 REMARK 3 7 3.8861 - 3.6915 1.00 1206 134 0.1823 0.1943 REMARK 3 8 3.6915 - 3.5308 1.00 1221 136 0.2079 0.2191 REMARK 3 9 3.5308 - 3.3949 1.00 1231 137 0.2106 0.2354 REMARK 3 10 3.3949 - 3.2777 1.00 1204 133 0.2289 0.2493 REMARK 3 11 3.2777 - 3.1753 1.00 1213 135 0.2534 0.3008 REMARK 3 12 3.1753 - 3.0845 1.00 1217 135 0.2547 0.2709 REMARK 3 13 3.0845 - 3.0033 1.00 1209 135 0.2734 0.3109 REMARK 3 14 3.0033 - 2.9300 1.00 1214 135 0.3433 0.3908 REMARK 3 15 2.9300 - 2.8634 1.00 1199 133 0.3768 0.3697 REMARK 3 16 2.8634 - 2.8025 0.99 1204 134 0.4645 0.4165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: RESID 14:19 REMARK 3 ORIGIN FOR THE GROUP (A): -78.0159 18.6980 -13.9445 REMARK 3 T TENSOR REMARK 3 T11: 1.5093 T22: 2.9648 REMARK 3 T33: 3.8091 T12: 0.6780 REMARK 3 T13: 0.3333 T23: -1.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.8484 L22: 5.5632 REMARK 3 L33: 5.4475 L12: 2.3753 REMARK 3 L13: -2.1500 L23: -5.4182 REMARK 3 S TENSOR REMARK 3 S11: -1.9332 S12: -2.6433 S13: 4.5095 REMARK 3 S21: 0.2047 S22: 1.2322 S23: 4.1862 REMARK 3 S31: -2.3619 S32: -4.4511 S33: 1.1681 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 75.137 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.920 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.95 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4QK8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M (NH4)2SO4, 0.2 M LI2SO4, AND 0.1 REMARK 280 M HEPES PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.70667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.70667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.35333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GTP A 1 PG O1G O2G O3G REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A 1 C3' - O3' - P ANGL. DEV. = -13.1 DEGREES REMARK 500 G A 2 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 5GP A 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 29 OP2 REMARK 620 2 G A 96 OP1 81.0 REMARK 620 3 C A 97 OP2 157.8 77.3 REMARK 620 4 U A 98 O4 85.2 85.2 88.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2BA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2BA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6N5K RELATED DB: PDB REMARK 900 RELATED ID: 6N5L RELATED DB: PDB REMARK 900 RELATED ID: 6N5N RELATED DB: PDB REMARK 900 RELATED ID: 6N5O RELATED DB: PDB REMARK 900 RELATED ID: 6N5P RELATED DB: PDB REMARK 900 RELATED ID: 6N5Q RELATED DB: PDB REMARK 900 RELATED ID: 6N5R RELATED DB: PDB DBREF 6N5S A 1 123 PDB 6N5S 6N5S 1 123 SEQRES 1 A 123 GTP G U U G C C G A A U C C SEQRES 2 A 123 A A A G U U G G U A C G G SEQRES 3 A 123 A G G A A C C G C U U U U SEQRES 4 A 123 U G G G G U U A A U C U G SEQRES 5 A 123 C A G U G A A G C U G C A SEQRES 6 A 123 G U A G G G A U A C C U U SEQRES 7 A 123 C U G U C C C G C A C C C SEQRES 8 A 123 G A C A G C U A A C U C C SEQRES 9 A 123 G G A G G C A A U A A A G SEQRES 10 A 123 G A A G G A HET GTP A 1 28 HET 5GP A 201 23 HET 2BA A 202 44 HET 2BA A 203 44 HET MG A 204 1 HET MG A 205 1 HET K A 206 1 HET MG A 207 1 HET MG A 208 1 HET SO4 A 209 5 HET MG A 210 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM 2BA (2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-2,9-BIS(6- HETNAM 2 2BA AMINO-9H-PURIN-9-YL)OCTAHYDRO-2H,7H-DIFURO[3,2-D:3', HETNAM 3 2BA 2'-J][1,3,7,9,2,8 ]TETRAOXADIPHOSPHACYCLODODECINE-3,5, HETNAM 4 2BA 10,12-TETROL 5,12-DIOXIDE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM SO4 SULFATE ION HETSYN 2BA BIS-(3',5')-CYCLIC-DIMERIC-ADENOSINE-MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 2 5GP C10 H14 N5 O8 P FORMUL 3 2BA 2(C20 H24 N10 O12 P2) FORMUL 5 MG 5(MG 2+) FORMUL 7 K K 1+ FORMUL 10 SO4 O4 S 2- FORMUL 12 HOH *6(H2 O) LINK O3' GTP A 1 P G A 2 1555 1555 1.56 LINK O2' GTP A 1 K K A 206 1555 1555 3.48 LINK OP2 G A 8 MG MG A 208 1555 1555 2.97 LINK OP1 A A 27 MG MG A 205 1555 1555 2.95 LINK OP2 G A 29 MG MG A 204 1555 1555 2.12 LINK OP1 G A 96 MG MG A 204 1555 1555 2.53 LINK OP2 G A 96 MG MG A 207 1555 1555 2.33 LINK OP2 C A 97 MG MG A 204 1555 1555 2.03 LINK O4 U A 98 MG MG A 204 1555 1555 2.32 LINK MG MG A 210 O HOH A 302 1555 1555 2.54 SITE 1 AC1 1 A A 123 SITE 1 AC2 15 G A 5 C A 6 C A 7 G A 8 SITE 2 AC2 15 A A 47 G A 70 G A 71 A A 72 SITE 3 AC2 15 U A 73 A A 74 C A 84 C A 85 SITE 4 AC2 15 G A 109 C A 110 A A 111 SITE 1 AC3 14 A A 9 G A 25 G A 26 A A 27 SITE 2 AC3 14 G A 28 G A 43 G A 44 U A 45 SITE 3 AC3 14 U A 46 C A 90 C A 91 A A 95 SITE 4 AC3 14 C A 104 G A 105 SITE 1 AC4 5 G A 29 A A 95 G A 96 C A 97 SITE 2 AC4 5 U A 98 SITE 1 AC5 2 A A 27 U A 45 SITE 1 AC6 1 GTP A 1 SITE 1 AC7 1 G A 96 SITE 1 AC8 4 C A 7 G A 8 G A 71 A A 72 SITE 1 AC9 3 A A 31 C A 97 U A 98 SITE 1 AD1 4 G A 2 C A 7 G A 8 HOH A 302 CRYST1 114.560 114.560 115.060 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008729 0.005040 0.000000 0.00000 SCALE2 0.000000 0.010079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000 HETATM 1 O3B GTP A 1 -56.313 1.919 -28.384 1.00139.41 O HETATM 2 PB GTP A 1 -57.368 3.100 -28.678 1.00138.37 P HETATM 3 O1B GTP A 1 -56.745 4.123 -29.599 1.00141.44 O HETATM 4 O2B GTP A 1 -57.822 3.726 -27.379 1.00142.04 O HETATM 5 O3A GTP A 1 -58.580 2.373 -29.453 1.00127.09 O HETATM 6 PA GTP A 1 -59.944 3.163 -29.792 1.00114.59 P HETATM 7 O1A GTP A 1 -59.755 3.945 -31.071 1.00117.35 O HETATM 8 O2A GTP A 1 -61.091 2.184 -29.909 1.00116.08 O HETATM 9 O5' GTP A 1 -60.169 4.180 -28.560 1.00104.64 O HETATM 10 C5' GTP A 1 -61.252 4.030 -27.666 1.00100.10 C HETATM 11 C4' GTP A 1 -61.650 5.376 -27.062 1.00 88.98 C HETATM 12 O4' GTP A 1 -60.504 6.170 -26.816 1.00 84.00 O HETATM 13 C3' GTP A 1 -62.540 6.222 -27.955 1.00 78.84 C HETATM 14 O3' GTP A 1 -63.906 5.916 -27.795 1.00 70.86 O HETATM 15 C2' GTP A 1 -62.226 7.628 -27.486 1.00 83.26 C HETATM 16 O2' GTP A 1 -63.058 7.988 -26.407 1.00 81.68 O HETATM 17 C1' GTP A 1 -60.790 7.544 -27.002 1.00 84.41 C HETATM 18 N9 GTP A 1 -59.940 8.077 -28.079 1.00 86.79 N HETATM 19 C8 GTP A 1 -58.997 7.375 -28.781 1.00 86.98 C HETATM 20 N7 GTP A 1 -58.429 8.202 -29.687 1.00 82.53 N HETATM 21 C5 GTP A 1 -58.988 9.425 -29.571 1.00 81.10 C HETATM 22 C6 GTP A 1 -58.769 10.619 -30.247 1.00 80.01 C HETATM 23 O6 GTP A 1 -57.927 10.683 -31.142 1.00 84.41 O HETATM 24 N1 GTP A 1 -59.506 11.734 -29.908 1.00 85.29 N HETATM 25 C2 GTP A 1 -60.450 11.658 -28.903 1.00 81.01 C HETATM 26 N2 GTP A 1 -61.162 12.733 -28.574 1.00 82.97 N HETATM 27 N3 GTP A 1 -60.659 10.466 -28.238 1.00 82.97 N HETATM 28 C4 GTP A 1 -59.941 9.364 -28.564 1.00 84.95 C