data_6N5T # _entry.id 6N5T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6N5T pdb_00006n5t 10.2210/pdb6n5t/pdb WWPDB D_1000238231 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6N5K unspecified PDB . 6N5L unspecified PDB . 6N5N unspecified PDB . 6N5O unspecified PDB . 6N5P unspecified PDB . 6N5Q unspecified PDB . 6N5R unspecified PDB . 6N5S unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6N5T _pdbx_database_status.recvd_initial_deposition_date 2018-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shoffner, G.M.' 1 0000-0001-5479-4203 'Peng, Z.' 2 0000-0001-7666-1276 'Guo, F.' 3 0000-0002-6245-1486 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Three-dimensional structures of pri-miRNA apical junctions and loops revealed by scaffold-directed crystallography' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shoffner, G.M.' 1 0000-0001-5479-4203 primary 'Peng, Z.' 2 0000-0001-7666-1276 primary 'Guo, F.' 3 0000-0002-6245-1486 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6N5T _cell.details ? _cell.formula_units_Z ? _cell.length_a 113.810 _cell.length_a_esd ? _cell.length_b 113.810 _cell.length_b_esd ? _cell.length_c 114.990 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6N5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (126-MER)' 40906.234 1 ? ? ? ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUUGCCGAAUCCCCUAGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUA CCUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUUGCCGAAUCCCCUAGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUU CUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 G n 1 19 A n 1 20 A n 1 21 A n 1 22 G n 1 23 G n 1 24 U n 1 25 A n 1 26 C n 1 27 G n 1 28 G n 1 29 A n 1 30 G n 1 31 G n 1 32 A n 1 33 A n 1 34 C n 1 35 C n 1 36 G n 1 37 C n 1 38 U n 1 39 U n 1 40 U n 1 41 U n 1 42 U n 1 43 G n 1 44 G n 1 45 G n 1 46 G n 1 47 U n 1 48 U n 1 49 A n 1 50 A n 1 51 U n 1 52 C n 1 53 U n 1 54 G n 1 55 C n 1 56 A n 1 57 G n 1 58 U n 1 59 G n 1 60 A n 1 61 A n 1 62 G n 1 63 C n 1 64 U n 1 65 G n 1 66 C n 1 67 A n 1 68 G n 1 69 U n 1 70 A n 1 71 G n 1 72 G n 1 73 G n 1 74 A n 1 75 U n 1 76 A n 1 77 C n 1 78 C n 1 79 U n 1 80 U n 1 81 C n 1 82 U n 1 83 G n 1 84 U n 1 85 C n 1 86 C n 1 87 C n 1 88 G n 1 89 C n 1 90 A n 1 91 C n 1 92 C n 1 93 C n 1 94 G n 1 95 A n 1 96 C n 1 97 A n 1 98 G n 1 99 C n 1 100 U n 1 101 A n 1 102 A n 1 103 C n 1 104 U n 1 105 C n 1 106 C n 1 107 G n 1 108 G n 1 109 A n 1 110 G n 1 111 G n 1 112 C n 1 113 A n 1 114 A n 1 115 U n 1 116 A n 1 117 A n 1 118 A n 1 119 G n 1 120 G n 1 121 A n 1 122 A n 1 123 G n 1 124 G n 1 125 A n 1 126 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 126 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6N5T _struct_ref.pdbx_db_accession 6N5T _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6N5T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6N5T _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6N5T _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details 'Room Temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.7 M (NH4)2SO4, 0.2 M Li2SO4, and 0.1 M HEPES pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Water-cooled flat double Si(111) Khozu monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.116 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.116 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6N5T _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.787 _reflns.d_resolution_low 74.8340 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21687 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.059 _reflns.pdbx_Rpim_I_all 0.014 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.79 _reflns_shell.d_res_low 2.89 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 88.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 17.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.4 _reflns_shell.pdbx_Rpim_I_all 0.327 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.848 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 313.690 _refine.B_iso_mean 110.1714 _refine.B_iso_min 54.030 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6N5T _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7870 _refine.ls_d_res_low 74.8340 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21687 _refine.ls_number_reflns_R_free 2170 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.9200 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1818 _refine.ls_R_factor_R_free 0.1963 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1801 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4QK8 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.1200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.7870 _refine_hist.d_res_low 74.8340 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2803 _refine_hist.pdbx_number_residues_total 126 _refine_hist.pdbx_B_iso_mean_ligand 70.56 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2705 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7872 2.8478 1158 . 116 1042 86.0000 . . . 0.4661 0.0000 0.4522 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.8478 2.9141 1334 . 133 1201 100.0000 . . . 0.4043 0.0000 0.3532 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.9141 2.9869 1357 . 136 1221 100.0000 . . . 0.3208 0.0000 0.3005 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.9869 3.0677 1359 . 136 1223 100.0000 . . . 0.2953 0.0000 0.2614 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.0677 3.1580 1359 . 136 1223 100.0000 . . . 0.2759 0.0000 0.2483 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.1580 3.2599 1336 . 134 1202 100.0000 . . . 0.2830 0.0000 0.2481 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.2599 3.3764 1357 . 136 1221 100.0000 . . . 0.2775 0.0000 0.2229 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.3764 3.5116 1347 . 136 1211 99.0000 . . . 0.2532 0.0000 0.2144 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.5116 3.6714 1367 . 136 1231 99.0000 . . . 0.2210 0.0000 0.2251 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.6714 3.8650 1342 . 134 1208 99.0000 . . . 0.2404 0.0000 0.2003 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.8650 4.1071 1360 . 136 1224 100.0000 . . . 0.1991 0.0000 0.1837 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.1071 4.4242 1358 . 135 1223 100.0000 . . . 0.1453 0.0000 0.1701 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.4242 4.8693 1383 . 138 1245 100.0000 . . . 0.1708 0.0000 0.1487 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.8693 5.5737 1405 . 141 1264 100.0000 . . . 0.1500 0.0000 0.1394 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 5.5737 7.0215 1394 . 139 1255 100.0000 . . . 0.1431 0.0000 0.1518 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 7.0215 74.8612 1471 . 148 1323 100.0000 . . . 0.1808 0.0000 0.1510 . . . . . . 16 . . . # _struct.entry_id 6N5T _struct.title 'Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6N5T _struct_keywords.text 'microRNA, RNA processing, Protein-RNA interaction, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.555 ? ? metalc1 metalc ? ? A C 7 OP1 ? ? ? 1_555 H MG . MG ? ? A C 7 A MG 207 1_555 ? ? ? ? ? ? ? 2.987 ? ? metalc2 metalc ? ? A A 29 OP1 ? ? ? 1_555 E MG . MG ? ? A A 29 A MG 204 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc3 metalc ? ? A G 31 OP2 ? ? ? 1_555 D MG . MG ? ? A G 31 A MG 203 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc4 metalc ? ? A U 47 OP1 ? ? ? 1_555 E MG . MG ? ? A U 47 A MG 204 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc5 metalc ? ? A A 74 OP1 ? ? ? 1_555 H MG . MG ? ? A A 74 A MG 207 1_555 ? ? ? ? ? ? ? 2.927 ? ? metalc6 metalc ? ? A G 98 OP1 ? ? ? 1_555 D MG . MG ? ? A G 98 A MG 203 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc7 metalc ? ? A G 98 OP2 ? ? ? 1_555 G MG . MG ? ? A G 98 A MG 206 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc8 metalc ? ? A C 99 OP2 ? ? ? 1_555 D MG . MG ? ? A C 99 A MG 203 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc9 metalc ? ? A U 100 O4 ? ? ? 1_555 D MG . MG ? ? A U 100 A MG 203 1_555 ? ? ? ? ? ? ? 2.399 ? ? hydrog1 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 113 N1 ? ? A U 4 A A 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 113 N6 ? ? A U 4 A A 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 112 N3 ? ? A G 5 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 112 O2 ? ? A G 5 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 112 N4 ? ? A G 5 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 111 N1 ? ? A C 6 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 111 O6 ? ? A C 6 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 111 N2 ? ? A C 6 A G 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 110 N1 ? ? A C 7 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 110 O6 ? ? A C 7 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 110 N2 ? ? A C 7 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 109 N7 ? ? A G 8 A A 109 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 109 N6 ? ? A G 8 A A 109 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A 9 N3 ? ? ? 1_555 A G 107 N2 ? ? A A 9 A G 107 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 24 O2 ? ? A U 11 A U 24 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A U 24 N3 ? ? A U 11 A U 24 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 12 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 12 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 12 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 O2 ? ? ? 1_555 A A 21 N6 ? ? A C 14 A A 21 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A C 15 O2 ? ? ? 1_555 A A 20 N6 ? ? A C 15 A A 20 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog25 hydrog ? ? A A 25 N6 ? ? ? 1_555 A G 108 N3 ? ? A A 25 A G 108 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog26 hydrog ? ? A A 25 N7 ? ? ? 1_555 A G 108 N2 ? ? A A 25 A G 108 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 107 N1 ? ? A C 26 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 107 O6 ? ? A C 26 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 107 N2 ? ? A C 26 A G 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 106 N3 ? ? A G 27 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 106 O2 ? ? A G 27 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 106 N4 ? ? A G 27 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 105 N3 ? ? A G 28 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 105 O2 ? ? A G 28 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 105 N4 ? ? A G 28 A C 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 29 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 29 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 103 N3 ? ? A G 30 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 103 O2 ? ? A G 30 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 103 N4 ? ? A G 30 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 31 N2 ? ? ? 1_555 A A 102 N7 ? ? A G 31 A A 102 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A G 31 N3 ? ? ? 1_555 A A 102 N6 ? ? A G 31 A A 102 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? A C 34 N4 ? ? ? 1_555 A C 99 O2 ? ? A C 34 A C 99 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog44 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 35 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 35 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 35 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 95 N1 ? ? A U 41 A A 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 95 N6 ? ? A U 41 A A 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 43 O6 ? ? ? 1_555 A G 94 N2 ? ? A G 43 A G 94 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 43 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 43 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 43 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 44 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 44 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 44 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 44 N2 ? ? ? 1_555 A A 97 N1 ? ? A G 44 A A 97 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog57 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 45 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 45 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 45 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 46 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 46 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 46 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 46 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 47 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 47 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 47 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 47 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 48 O2 ? ? ? 1_555 A C 89 N4 ? ? A U 48 A C 89 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog66 hydrog ? ? A A 49 N3 ? ? ? 1_555 A G 71 N2 ? ? A A 49 A G 71 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog67 hydrog ? ? A U 51 N3 ? ? ? 1_555 A U 69 O2 ? ? A U 51 A U 69 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog68 hydrog ? ? A U 51 O4 ? ? ? 1_555 A U 69 N3 ? ? A U 51 A U 69 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog69 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 52 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 52 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 52 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 53 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 53 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 53 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 53 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 54 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 54 A C 66 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog75 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 55 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 55 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 55 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 56 N1 ? ? ? 1_555 A U 64 N3 ? ? A A 56 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 56 N6 ? ? ? 1_555 A U 64 O4 ? ? A A 56 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 57 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 57 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 57 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 70 N6 ? ? ? 1_555 A G 88 N3 ? ? A A 70 A G 88 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog84 hydrog ? ? A A 70 N7 ? ? ? 1_555 A G 88 N2 ? ? A A 70 A G 88 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog85 hydrog ? ? A G 71 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 71 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 71 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 71 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 71 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 71 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 72 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 72 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 72 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 72 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 72 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 72 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 73 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 73 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 73 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A A 74 N1 ? ? ? 1_555 A U 84 N3 ? ? A A 74 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A A 74 N6 ? ? ? 1_555 A U 84 O4 ? ? A A 74 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A U 75 N3 ? ? ? 1_555 A G 83 O6 ? ? A U 75 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog97 hydrog ? ? A U 75 O2 ? ? ? 1_555 A G 83 N1 ? ? A U 75 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog98 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 124 N1 ? ? A C 77 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 124 O6 ? ? A C 77 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 124 N2 ? ? A C 77 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 78 N3 ? ? ? 1_555 A G 123 N1 ? ? A C 78 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 78 N4 ? ? ? 1_555 A G 123 O6 ? ? A C 78 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 78 O2 ? ? ? 1_555 A G 123 N2 ? ? A C 78 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A U 79 N3 ? ? ? 1_555 A A 122 N1 ? ? A U 79 A A 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A U 79 O4 ? ? ? 1_555 A A 122 N6 ? ? A U 79 A A 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A U 80 N3 ? ? ? 1_555 A A 121 N1 ? ? A U 80 A A 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A U 80 O4 ? ? ? 1_555 A A 121 N6 ? ? A U 80 A A 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 81 N3 ? ? ? 1_555 A G 120 N1 ? ? A C 81 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 81 N4 ? ? ? 1_555 A G 120 O6 ? ? A C 81 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 81 O2 ? ? ? 1_555 A G 120 N2 ? ? A C 81 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A U 82 N3 ? ? ? 1_555 A G 119 O6 ? ? A U 82 A G 119 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog112 hydrog ? ? A U 82 O2 ? ? ? 1_555 A G 119 N1 ? ? A U 82 A G 119 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog113 hydrog ? ? A G 83 N2 ? ? ? 1_555 A A 117 N3 ? ? A G 83 A A 117 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog114 hydrog ? ? A C 93 O2 ? ? ? 1_555 A A 97 N6 ? ? A C 93 A A 97 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog115 hydrog ? ? A G 94 N3 ? ? ? 1_555 A C 96 N4 ? ? A G 94 A C 96 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2BA 201 ? 15 'binding site for residue 2BA A 201' AC2 Software A 2BA 202 ? 14 'binding site for residue 2BA A 202' AC3 Software A MG 203 ? 5 'binding site for residue MG A 203' AC4 Software A MG 204 ? 2 'binding site for residue MG A 204' AC5 Software A K 205 ? 1 'binding site for residue K A 205' AC6 Software A MG 206 ? 1 'binding site for residue MG A 206' AC7 Software A MG 207 ? 4 'binding site for residue MG A 207' AC8 Software A SO4 208 ? 3 'binding site for residue SO4 A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 15 C A 6 ? C A 6 . ? 1_555 ? 3 AC1 15 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 15 G A 8 ? G A 8 . ? 1_555 ? 5 AC1 15 A A 49 ? A A 49 . ? 1_555 ? 6 AC1 15 G A 72 ? G A 72 . ? 1_555 ? 7 AC1 15 G A 73 ? G A 73 . ? 1_555 ? 8 AC1 15 A A 74 ? A A 74 . ? 1_555 ? 9 AC1 15 U A 75 ? U A 75 . ? 1_555 ? 10 AC1 15 A A 76 ? A A 76 . ? 1_555 ? 11 AC1 15 C A 86 ? C A 86 . ? 1_555 ? 12 AC1 15 C A 87 ? C A 87 . ? 1_555 ? 13 AC1 15 G A 111 ? G A 111 . ? 1_555 ? 14 AC1 15 C A 112 ? C A 112 . ? 1_555 ? 15 AC1 15 A A 113 ? A A 113 . ? 1_555 ? 16 AC2 14 A A 9 ? A A 9 . ? 1_555 ? 17 AC2 14 G A 27 ? G A 27 . ? 1_555 ? 18 AC2 14 G A 28 ? G A 28 . ? 1_555 ? 19 AC2 14 A A 29 ? A A 29 . ? 1_555 ? 20 AC2 14 G A 30 ? G A 30 . ? 1_555 ? 21 AC2 14 G A 45 ? G A 45 . ? 1_555 ? 22 AC2 14 G A 46 ? G A 46 . ? 1_555 ? 23 AC2 14 U A 47 ? U A 47 . ? 1_555 ? 24 AC2 14 U A 48 ? U A 48 . ? 1_555 ? 25 AC2 14 C A 92 ? C A 92 . ? 1_555 ? 26 AC2 14 C A 93 ? C A 93 . ? 1_555 ? 27 AC2 14 A A 97 ? A A 97 . ? 1_555 ? 28 AC2 14 C A 106 ? C A 106 . ? 1_555 ? 29 AC2 14 G A 107 ? G A 107 . ? 1_555 ? 30 AC3 5 G A 31 ? G A 31 . ? 1_555 ? 31 AC3 5 A A 97 ? A A 97 . ? 1_555 ? 32 AC3 5 G A 98 ? G A 98 . ? 1_555 ? 33 AC3 5 C A 99 ? C A 99 . ? 1_555 ? 34 AC3 5 U A 100 ? U A 100 . ? 1_555 ? 35 AC4 2 A A 29 ? A A 29 . ? 1_555 ? 36 AC4 2 U A 47 ? U A 47 . ? 1_555 ? 37 AC5 1 GTP A 1 ? GTP A 1 . ? 1_555 ? 38 AC6 1 G A 98 ? G A 98 . ? 1_555 ? 39 AC7 4 C A 7 ? C A 7 . ? 1_555 ? 40 AC7 4 G A 8 ? G A 8 . ? 1_555 ? 41 AC7 4 G A 73 ? G A 73 . ? 1_555 ? 42 AC7 4 A A 74 ? A A 74 . ? 1_555 ? 43 AC8 3 A A 33 ? A A 33 . ? 1_555 ? 44 AC8 3 C A 99 ? C A 99 . ? 1_555 ? 45 AC8 3 U A 100 ? U A 100 . ? 1_555 ? # _atom_sites.entry_id 6N5T _atom_sites.fract_transf_matrix[1][1] 0.008787 _atom_sites.fract_transf_matrix[1][2] 0.005073 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010146 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008696 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 G 31 31 31 G G A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 C 37 37 37 C C A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 U 42 42 42 U U A . n A 1 43 G 43 43 43 G G A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 U 48 48 48 U U A . n A 1 49 A 49 49 49 A A A . n A 1 50 A 50 50 50 A A A . n A 1 51 U 51 51 51 U U A . n A 1 52 C 52 52 52 C C A . n A 1 53 U 53 53 53 U U A . n A 1 54 G 54 54 54 G G A . n A 1 55 C 55 55 55 C C A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 U 58 58 58 U U A . n A 1 59 G 59 59 59 G G A . n A 1 60 A 60 60 60 A A A . n A 1 61 A 61 61 61 A A A . n A 1 62 G 62 62 62 G G A . n A 1 63 C 63 63 63 C C A . n A 1 64 U 64 64 64 U U A . n A 1 65 G 65 65 65 G G A . n A 1 66 C 66 66 66 C C A . n A 1 67 A 67 67 67 A A A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 A 70 70 70 A A A . n A 1 71 G 71 71 71 G G A . n A 1 72 G 72 72 72 G G A . n A 1 73 G 73 73 73 G G A . n A 1 74 A 74 74 74 A A A . n A 1 75 U 75 75 75 U U A . n A 1 76 A 76 76 76 A A A . n A 1 77 C 77 77 77 C C A . n A 1 78 C 78 78 78 C C A . n A 1 79 U 79 79 79 U U A . n A 1 80 U 80 80 80 U U A . n A 1 81 C 81 81 81 C C A . n A 1 82 U 82 82 82 U U A . n A 1 83 G 83 83 83 G G A . n A 1 84 U 84 84 84 U U A . n A 1 85 C 85 85 85 C C A . n A 1 86 C 86 86 86 C C A . n A 1 87 C 87 87 87 C C A . n A 1 88 G 88 88 88 G G A . n A 1 89 C 89 89 89 C C A . n A 1 90 A 90 90 90 A A A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 G 94 94 94 G G A . n A 1 95 A 95 95 95 A A A . n A 1 96 C 96 96 96 C C A . n A 1 97 A 97 97 97 A A A . n A 1 98 G 98 98 98 G G A . n A 1 99 C 99 99 99 C C A . n A 1 100 U 100 100 100 U U A . n A 1 101 A 101 101 101 A A A . n A 1 102 A 102 102 102 A A A . n A 1 103 C 103 103 103 C C A . n A 1 104 U 104 104 104 U U A . n A 1 105 C 105 105 105 C C A . n A 1 106 C 106 106 106 C C A . n A 1 107 G 107 107 107 G G A . n A 1 108 G 108 108 108 G G A . n A 1 109 A 109 109 109 A A A . n A 1 110 G 110 110 110 G G A . n A 1 111 G 111 111 111 G G A . n A 1 112 C 112 112 112 C C A . n A 1 113 A 113 113 113 A A A . n A 1 114 A 114 114 114 A A A . n A 1 115 U 115 115 115 U U A . n A 1 116 A 116 116 116 A A A . n A 1 117 A 117 117 117 A A A . n A 1 118 A 118 118 118 A A A . n A 1 119 G 119 119 119 G G A . n A 1 120 G 120 120 120 G G A . n A 1 121 A 121 121 121 A A A . n A 1 122 A 122 122 122 A A A . n A 1 123 G 123 123 123 G G A . n A 1 124 G 124 124 124 G G A . n A 1 125 A 125 125 125 A A A . n A 1 126 G 126 126 126 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA 1 201 201 2BA 2BA A . C 2 2BA 1 202 202 2BA 2BA A . D 3 MG 1 203 203 MG MG A . E 3 MG 1 204 204 MG MG A . F 4 K 1 205 205 K K A . G 3 MG 1 206 206 MG MG A . H 3 MG 1 207 207 MG MG A . I 5 SO4 1 208 208 SO4 SO4 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 7 ? A C 7 ? 1_555 MG ? H MG . ? A MG 207 ? 1_555 OP1 ? A A 74 ? A A 74 ? 1_555 57.1 ? 2 OP1 ? A A 29 ? A A 29 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP1 ? A U 47 ? A U 47 ? 1_555 65.6 ? 3 OP2 ? A G 31 ? A G 31 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A G 98 ? A G 98 ? 1_555 78.9 ? 4 OP2 ? A G 31 ? A G 31 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 99 ? A C 99 ? 1_555 155.6 ? 5 OP1 ? A G 98 ? A G 98 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 99 ? A C 99 ? 1_555 76.8 ? 6 OP2 ? A G 31 ? A G 31 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 100 ? A U 100 ? 1_555 82.3 ? 7 OP1 ? A G 98 ? A G 98 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 100 ? A U 100 ? 1_555 79.1 ? 8 OP2 ? A C 99 ? A C 99 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O4 ? A U 100 ? A U 100 ? 1_555 90.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity 6 2 'Structure model' pdbx_entity_nonpoly 7 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity.pdbx_description' 5 2 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A GTP 1 ? ? "O3'" A GTP 1 ? ? P A G 2 ? ? 111.15 119.70 -8.55 1.20 Y 2 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 123.26 110.50 12.76 1.10 Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BA P P N R 1 2BA O1P O N N 2 2BA O2P O N N 3 2BA "O5'" O N N 4 2BA "C5'" C N N 5 2BA "C4'" C N R 6 2BA "O4'" O N N 7 2BA "C3'" C N S 8 2BA "O3'" O N N 9 2BA "C2'" C N R 10 2BA "O2'" O N N 11 2BA "C1'" C N R 12 2BA N9 N Y N 13 2BA C8 C Y N 14 2BA N7 N Y N 15 2BA C5 C Y N 16 2BA C6 C Y N 17 2BA N6 N N N 18 2BA N1 N Y N 19 2BA C2 C Y N 20 2BA N3 N Y N 21 2BA C4 C Y N 22 2BA P1 P N R 23 2BA O1P1 O N N 24 2BA O2P1 O N N 25 2BA "O5'1" O N N 26 2BA "C5'1" C N N 27 2BA "C4'1" C N R 28 2BA "O4'1" O N N 29 2BA "C3'1" C N S 30 2BA "O3'1" O N N 31 2BA "C2'1" C N R 32 2BA "O2'1" O N N 33 2BA "C1'1" C N R 34 2BA N91 N Y N 35 2BA C81 C Y N 36 2BA N71 N Y N 37 2BA C51 C Y N 38 2BA C61 C Y N 39 2BA N61 N N N 40 2BA N11 N Y N 41 2BA C21 C Y N 42 2BA N31 N Y N 43 2BA C41 C Y N 44 2BA "H5'" H N N 45 2BA "H5'A" H N N 46 2BA "H4'" H N N 47 2BA "H3'" H N N 48 2BA "H2'" H N N 49 2BA "HO2'" H N N 50 2BA "H1'" H N N 51 2BA H8 H N N 52 2BA HN6 H N N 53 2BA HN6A H N N 54 2BA H2 H N N 55 2BA "HC5'" H N N 56 2BA HC5A H N N 57 2BA "HC4'" H N N 58 2BA "HC3'" H N N 59 2BA "HC2'" H N N 60 2BA HO2A H N N 61 2BA "HC1'" H N N 62 2BA HC8 H N N 63 2BA H1N6 H N N 64 2BA H1NA H N N 65 2BA HC2 H N N 66 2BA H2P H N N 67 2BA H2OP H N N 68 A OP3 O N N 69 A P P N N 70 A OP1 O N N 71 A OP2 O N N 72 A "O5'" O N N 73 A "C5'" C N N 74 A "C4'" C N R 75 A "O4'" O N N 76 A "C3'" C N S 77 A "O3'" O N N 78 A "C2'" C N R 79 A "O2'" O N N 80 A "C1'" C N R 81 A N9 N Y N 82 A C8 C Y N 83 A N7 N Y N 84 A C5 C Y N 85 A C6 C Y N 86 A N6 N N N 87 A N1 N Y N 88 A C2 C Y N 89 A N3 N Y N 90 A C4 C Y N 91 A HOP3 H N N 92 A HOP2 H N N 93 A "H5'" H N N 94 A "H5''" H N N 95 A "H4'" H N N 96 A "H3'" H N N 97 A "HO3'" H N N 98 A "H2'" H N N 99 A "HO2'" H N N 100 A "H1'" H N N 101 A H8 H N N 102 A H61 H N N 103 A H62 H N N 104 A H2 H N N 105 C OP3 O N N 106 C P P N N 107 C OP1 O N N 108 C OP2 O N N 109 C "O5'" O N N 110 C "C5'" C N N 111 C "C4'" C N R 112 C "O4'" O N N 113 C "C3'" C N S 114 C "O3'" O N N 115 C "C2'" C N R 116 C "O2'" O N N 117 C "C1'" C N R 118 C N1 N N N 119 C C2 C N N 120 C O2 O N N 121 C N3 N N N 122 C C4 C N N 123 C N4 N N N 124 C C5 C N N 125 C C6 C N N 126 C HOP3 H N N 127 C HOP2 H N N 128 C "H5'" H N N 129 C "H5''" H N N 130 C "H4'" H N N 131 C "H3'" H N N 132 C "HO3'" H N N 133 C "H2'" H N N 134 C "HO2'" H N N 135 C "H1'" H N N 136 C H41 H N N 137 C H42 H N N 138 C H5 H N N 139 C H6 H N N 140 G OP3 O N N 141 G P P N N 142 G OP1 O N N 143 G OP2 O N N 144 G "O5'" O N N 145 G "C5'" C N N 146 G "C4'" C N R 147 G "O4'" O N N 148 G "C3'" C N S 149 G "O3'" O N N 150 G "C2'" C N R 151 G "O2'" O N N 152 G "C1'" C N R 153 G N9 N Y N 154 G C8 C Y N 155 G N7 N Y N 156 G C5 C Y N 157 G C6 C N N 158 G O6 O N N 159 G N1 N N N 160 G C2 C N N 161 G N2 N N N 162 G N3 N N N 163 G C4 C Y N 164 G HOP3 H N N 165 G HOP2 H N N 166 G "H5'" H N N 167 G "H5''" H N N 168 G "H4'" H N N 169 G "H3'" H N N 170 G "HO3'" H N N 171 G "H2'" H N N 172 G "HO2'" H N N 173 G "H1'" H N N 174 G H8 H N N 175 G H1 H N N 176 G H21 H N N 177 G H22 H N N 178 GTP PG P N N 179 GTP O1G O N N 180 GTP O2G O N N 181 GTP O3G O N N 182 GTP O3B O N N 183 GTP PB P N N 184 GTP O1B O N N 185 GTP O2B O N N 186 GTP O3A O N N 187 GTP PA P N N 188 GTP O1A O N N 189 GTP O2A O N N 190 GTP "O5'" O N N 191 GTP "C5'" C N N 192 GTP "C4'" C N R 193 GTP "O4'" O N N 194 GTP "C3'" C N S 195 GTP "O3'" O N N 196 GTP "C2'" C N R 197 GTP "O2'" O N N 198 GTP "C1'" C N R 199 GTP N9 N Y N 200 GTP C8 C Y N 201 GTP N7 N Y N 202 GTP C5 C Y N 203 GTP C6 C N N 204 GTP O6 O N N 205 GTP N1 N N N 206 GTP C2 C N N 207 GTP N2 N N N 208 GTP N3 N N N 209 GTP C4 C Y N 210 GTP HOG2 H N N 211 GTP HOG3 H N N 212 GTP HOB2 H N N 213 GTP HOA2 H N N 214 GTP "H5'" H N N 215 GTP "H5''" H N N 216 GTP "H4'" H N N 217 GTP "H3'" H N N 218 GTP "HO3'" H N N 219 GTP "H2'" H N N 220 GTP "HO2'" H N N 221 GTP "H1'" H N N 222 GTP H8 H N N 223 GTP HN1 H N N 224 GTP HN21 H N N 225 GTP HN22 H N N 226 K K K N N 227 MG MG MG N N 228 SO4 S S N N 229 SO4 O1 O N N 230 SO4 O2 O N N 231 SO4 O3 O N N 232 SO4 O4 O N N 233 U OP3 O N N 234 U P P N N 235 U OP1 O N N 236 U OP2 O N N 237 U "O5'" O N N 238 U "C5'" C N N 239 U "C4'" C N R 240 U "O4'" O N N 241 U "C3'" C N S 242 U "O3'" O N N 243 U "C2'" C N R 244 U "O2'" O N N 245 U "C1'" C N R 246 U N1 N N N 247 U C2 C N N 248 U O2 O N N 249 U N3 N N N 250 U C4 C N N 251 U O4 O N N 252 U C5 C N N 253 U C6 C N N 254 U HOP3 H N N 255 U HOP2 H N N 256 U "H5'" H N N 257 U "H5''" H N N 258 U "H4'" H N N 259 U "H3'" H N N 260 U "HO3'" H N N 261 U "H2'" H N N 262 U "HO2'" H N N 263 U "H1'" H N N 264 U H3 H N N 265 U H5 H N N 266 U H6 H N N 267 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BA P O1P doub N N 1 2BA P O2P sing N N 2 2BA P "O5'" sing N N 3 2BA P "O3'1" sing N N 4 2BA "O5'" "C5'" sing N N 5 2BA "C5'" "C4'" sing N N 6 2BA "C4'" "O4'" sing N N 7 2BA "C4'" "C3'" sing N N 8 2BA "O4'" "C1'" sing N N 9 2BA "C3'" "O3'" sing N N 10 2BA "C3'" "C2'" sing N N 11 2BA "O3'" P1 sing N N 12 2BA "C2'" "O2'" sing N N 13 2BA "C2'" "C1'" sing N N 14 2BA "C1'" N9 sing N N 15 2BA N9 C8 sing Y N 16 2BA N9 C4 sing Y N 17 2BA C8 N7 doub Y N 18 2BA N7 C5 sing Y N 19 2BA C5 C6 doub Y N 20 2BA C5 C4 sing Y N 21 2BA C6 N6 sing N N 22 2BA C6 N1 sing Y N 23 2BA N1 C2 doub Y N 24 2BA C2 N3 sing Y N 25 2BA N3 C4 doub Y N 26 2BA P1 O1P1 doub N N 27 2BA P1 O2P1 sing N N 28 2BA P1 "O5'1" sing N N 29 2BA "O5'1" "C5'1" sing N N 30 2BA "C5'1" "C4'1" sing N N 31 2BA "C4'1" "O4'1" sing N N 32 2BA "C4'1" "C3'1" sing N N 33 2BA "O4'1" "C1'1" sing N N 34 2BA "C3'1" "O3'1" sing N N 35 2BA "C3'1" "C2'1" sing N N 36 2BA "C2'1" "O2'1" sing N N 37 2BA "C2'1" "C1'1" sing N N 38 2BA "C1'1" N91 sing N N 39 2BA N91 C81 sing Y N 40 2BA N91 C41 sing Y N 41 2BA C81 N71 doub Y N 42 2BA N71 C51 sing Y N 43 2BA C51 C61 doub Y N 44 2BA C51 C41 sing Y N 45 2BA C61 N61 sing N N 46 2BA C61 N11 sing Y N 47 2BA N11 C21 doub Y N 48 2BA C21 N31 sing Y N 49 2BA N31 C41 doub Y N 50 2BA "C5'" "H5'" sing N N 51 2BA "C5'" "H5'A" sing N N 52 2BA "C4'" "H4'" sing N N 53 2BA "C3'" "H3'" sing N N 54 2BA "C2'" "H2'" sing N N 55 2BA "O2'" "HO2'" sing N N 56 2BA "C1'" "H1'" sing N N 57 2BA C8 H8 sing N N 58 2BA N6 HN6 sing N N 59 2BA N6 HN6A sing N N 60 2BA C2 H2 sing N N 61 2BA "C5'1" "HC5'" sing N N 62 2BA "C5'1" HC5A sing N N 63 2BA "C4'1" "HC4'" sing N N 64 2BA "C3'1" "HC3'" sing N N 65 2BA "C2'1" "HC2'" sing N N 66 2BA "O2'1" HO2A sing N N 67 2BA "C1'1" "HC1'" sing N N 68 2BA C81 HC8 sing N N 69 2BA N61 H1N6 sing N N 70 2BA N61 H1NA sing N N 71 2BA C21 HC2 sing N N 72 2BA O2P H2P sing N N 73 2BA O2P1 H2OP sing N N 74 A OP3 P sing N N 75 A OP3 HOP3 sing N N 76 A P OP1 doub N N 77 A P OP2 sing N N 78 A P "O5'" sing N N 79 A OP2 HOP2 sing N N 80 A "O5'" "C5'" sing N N 81 A "C5'" "C4'" sing N N 82 A "C5'" "H5'" sing N N 83 A "C5'" "H5''" sing N N 84 A "C4'" "O4'" sing N N 85 A "C4'" "C3'" sing N N 86 A "C4'" "H4'" sing N N 87 A "O4'" "C1'" sing N N 88 A "C3'" "O3'" sing N N 89 A "C3'" "C2'" sing N N 90 A "C3'" "H3'" sing N N 91 A "O3'" "HO3'" sing N N 92 A "C2'" "O2'" sing N N 93 A "C2'" "C1'" sing N N 94 A "C2'" "H2'" sing N N 95 A "O2'" "HO2'" sing N N 96 A "C1'" N9 sing N N 97 A "C1'" "H1'" sing N N 98 A N9 C8 sing Y N 99 A N9 C4 sing Y N 100 A C8 N7 doub Y N 101 A C8 H8 sing N N 102 A N7 C5 sing Y N 103 A C5 C6 sing Y N 104 A C5 C4 doub Y N 105 A C6 N6 sing N N 106 A C6 N1 doub Y N 107 A N6 H61 sing N N 108 A N6 H62 sing N N 109 A N1 C2 sing Y N 110 A C2 N3 doub Y N 111 A C2 H2 sing N N 112 A N3 C4 sing Y N 113 C OP3 P sing N N 114 C OP3 HOP3 sing N N 115 C P OP1 doub N N 116 C P OP2 sing N N 117 C P "O5'" sing N N 118 C OP2 HOP2 sing N N 119 C "O5'" "C5'" sing N N 120 C "C5'" "C4'" sing N N 121 C "C5'" "H5'" sing N N 122 C "C5'" "H5''" sing N N 123 C "C4'" "O4'" sing N N 124 C "C4'" "C3'" sing N N 125 C "C4'" "H4'" sing N N 126 C "O4'" "C1'" sing N N 127 C "C3'" "O3'" sing N N 128 C "C3'" "C2'" sing N N 129 C "C3'" "H3'" sing N N 130 C "O3'" "HO3'" sing N N 131 C "C2'" "O2'" sing N N 132 C "C2'" "C1'" sing N N 133 C "C2'" "H2'" sing N N 134 C "O2'" "HO2'" sing N N 135 C "C1'" N1 sing N N 136 C "C1'" "H1'" sing N N 137 C N1 C2 sing N N 138 C N1 C6 sing N N 139 C C2 O2 doub N N 140 C C2 N3 sing N N 141 C N3 C4 doub N N 142 C C4 N4 sing N N 143 C C4 C5 sing N N 144 C N4 H41 sing N N 145 C N4 H42 sing N N 146 C C5 C6 doub N N 147 C C5 H5 sing N N 148 C C6 H6 sing N N 149 G OP3 P sing N N 150 G OP3 HOP3 sing N N 151 G P OP1 doub N N 152 G P OP2 sing N N 153 G P "O5'" sing N N 154 G OP2 HOP2 sing N N 155 G "O5'" "C5'" sing N N 156 G "C5'" "C4'" sing N N 157 G "C5'" "H5'" sing N N 158 G "C5'" "H5''" sing N N 159 G "C4'" "O4'" sing N N 160 G "C4'" "C3'" sing N N 161 G "C4'" "H4'" sing N N 162 G "O4'" "C1'" sing N N 163 G "C3'" "O3'" sing N N 164 G "C3'" "C2'" sing N N 165 G "C3'" "H3'" sing N N 166 G "O3'" "HO3'" sing N N 167 G "C2'" "O2'" sing N N 168 G "C2'" "C1'" sing N N 169 G "C2'" "H2'" sing N N 170 G "O2'" "HO2'" sing N N 171 G "C1'" N9 sing N N 172 G "C1'" "H1'" sing N N 173 G N9 C8 sing Y N 174 G N9 C4 sing Y N 175 G C8 N7 doub Y N 176 G C8 H8 sing N N 177 G N7 C5 sing Y N 178 G C5 C6 sing N N 179 G C5 C4 doub Y N 180 G C6 O6 doub N N 181 G C6 N1 sing N N 182 G N1 C2 sing N N 183 G N1 H1 sing N N 184 G C2 N2 sing N N 185 G C2 N3 doub N N 186 G N2 H21 sing N N 187 G N2 H22 sing N N 188 G N3 C4 sing N N 189 GTP PG O1G doub N N 190 GTP PG O2G sing N N 191 GTP PG O3G sing N N 192 GTP PG O3B sing N N 193 GTP O2G HOG2 sing N N 194 GTP O3G HOG3 sing N N 195 GTP O3B PB sing N N 196 GTP PB O1B doub N N 197 GTP PB O2B sing N N 198 GTP PB O3A sing N N 199 GTP O2B HOB2 sing N N 200 GTP O3A PA sing N N 201 GTP PA O1A doub N N 202 GTP PA O2A sing N N 203 GTP PA "O5'" sing N N 204 GTP O2A HOA2 sing N N 205 GTP "O5'" "C5'" sing N N 206 GTP "C5'" "C4'" sing N N 207 GTP "C5'" "H5'" sing N N 208 GTP "C5'" "H5''" sing N N 209 GTP "C4'" "O4'" sing N N 210 GTP "C4'" "C3'" sing N N 211 GTP "C4'" "H4'" sing N N 212 GTP "O4'" "C1'" sing N N 213 GTP "C3'" "O3'" sing N N 214 GTP "C3'" "C2'" sing N N 215 GTP "C3'" "H3'" sing N N 216 GTP "O3'" "HO3'" sing N N 217 GTP "C2'" "O2'" sing N N 218 GTP "C2'" "C1'" sing N N 219 GTP "C2'" "H2'" sing N N 220 GTP "O2'" "HO2'" sing N N 221 GTP "C1'" N9 sing N N 222 GTP "C1'" "H1'" sing N N 223 GTP N9 C8 sing Y N 224 GTP N9 C4 sing Y N 225 GTP C8 N7 doub Y N 226 GTP C8 H8 sing N N 227 GTP N7 C5 sing Y N 228 GTP C5 C6 sing N N 229 GTP C5 C4 doub Y N 230 GTP C6 O6 doub N N 231 GTP C6 N1 sing N N 232 GTP N1 C2 sing N N 233 GTP N1 HN1 sing N N 234 GTP C2 N2 sing N N 235 GTP C2 N3 doub N N 236 GTP N2 HN21 sing N N 237 GTP N2 HN22 sing N N 238 GTP N3 C4 sing N N 239 SO4 S O1 doub N N 240 SO4 S O2 doub N N 241 SO4 S O3 sing N N 242 SO4 S O4 sing N N 243 U OP3 P sing N N 244 U OP3 HOP3 sing N N 245 U P OP1 doub N N 246 U P OP2 sing N N 247 U P "O5'" sing N N 248 U OP2 HOP2 sing N N 249 U "O5'" "C5'" sing N N 250 U "C5'" "C4'" sing N N 251 U "C5'" "H5'" sing N N 252 U "C5'" "H5''" sing N N 253 U "C4'" "O4'" sing N N 254 U "C4'" "C3'" sing N N 255 U "C4'" "H4'" sing N N 256 U "O4'" "C1'" sing N N 257 U "C3'" "O3'" sing N N 258 U "C3'" "C2'" sing N N 259 U "C3'" "H3'" sing N N 260 U "O3'" "HO3'" sing N N 261 U "C2'" "O2'" sing N N 262 U "C2'" "C1'" sing N N 263 U "C2'" "H2'" sing N N 264 U "O2'" "HO2'" sing N N 265 U "C1'" N1 sing N N 266 U "C1'" "H1'" sing N N 267 U N1 C2 sing N N 268 U N1 C6 sing N N 269 U C2 O2 doub N N 270 U C2 N3 sing N N 271 U N3 C4 sing N N 272 U N3 H3 sing N N 273 U C4 O4 doub N N 274 U C4 C5 sing N N 275 U C5 C6 doub N N 276 U C5 H5 sing N N 277 U C6 H6 sing N N 278 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6N5T 'double helix' 6N5T 'a-form double helix' 6N5T 'hairpin loop' 6N5T 'mismatched base pair' 6N5T 'internal loop' 6N5T 'quadruple helix' 6N5T 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 4 1_555 A A 113 1_555 -0.417 -0.061 0.118 9.744 -12.453 -1.552 1 A_U4:A113_A A 4 ? A 113 ? 20 1 1 A G 5 1_555 A C 112 1_555 0.015 -0.150 -0.010 -4.599 -13.106 1.888 2 A_G5:C112_A A 5 ? A 112 ? 19 1 1 A C 6 1_555 A G 111 1_555 0.426 -0.113 -0.239 5.271 -7.003 5.209 3 A_C6:G111_A A 6 ? A 111 ? 19 1 1 A C 7 1_555 A G 110 1_555 0.504 -0.283 -0.257 11.369 3.008 -1.516 4 A_C7:G110_A A 7 ? A 110 ? 19 1 1 A G 8 1_555 A A 109 1_555 6.722 -4.071 0.381 29.140 3.671 -3.812 5 A_G8:A109_A A 8 ? A 109 ? 11 9 1 A A 20 1_555 A C 15 1_555 -7.142 -4.422 0.695 8.649 14.301 -28.573 6 A_A20:C15_A A 20 ? A 15 ? ? ? 1 A A 21 1_555 A C 14 1_555 -4.623 -0.840 -0.168 11.601 1.931 -3.283 7 A_A21:C14_A A 21 ? A 14 ? ? 1 1 A G 22 1_555 A C 13 1_555 -0.898 -0.166 -0.257 4.935 -0.273 5.512 8 A_G22:C13_A A 22 ? A 13 ? 19 1 1 A G 23 1_555 A C 12 1_555 0.683 -0.071 -0.813 -8.079 -10.506 -1.188 9 A_G23:C12_A A 23 ? A 12 ? 19 1 1 A U 24 1_555 A U 11 1_555 2.219 -2.080 -0.214 0.634 -5.023 12.243 10 A_U24:U11_A A 24 ? A 11 ? 16 1 1 A A 25 1_555 A G 108 1_555 -6.888 -4.804 0.186 1.779 -12.480 -13.432 11 A_A25:G108_A A 25 ? A 108 ? 11 10 1 A C 26 1_555 A G 107 1_555 0.038 -0.155 -0.229 6.737 -6.390 1.860 12 A_C26:G107_A A 26 ? A 107 ? 19 1 1 A G 27 1_555 A C 106 1_555 -0.081 -0.171 -0.569 -9.520 -5.884 1.433 13 A_G27:C106_A A 27 ? A 106 ? 19 1 1 A G 28 1_555 A C 105 1_555 -0.389 -0.109 -0.408 -6.822 1.683 -0.398 14 A_G28:C105_A A 28 ? A 105 ? 19 1 1 A A 29 1_555 A U 104 1_555 -0.151 -0.170 -0.229 -2.310 -1.795 -0.015 15 A_A29:U104_A A 29 ? A 104 ? 20 1 1 A G 30 1_555 A C 103 1_555 -0.220 -0.250 -0.132 -5.366 -8.740 1.597 16 A_G30:C103_A A 30 ? A 103 ? 19 1 1 A G 31 1_555 A A 102 1_555 6.902 -4.131 -0.117 -6.696 -10.724 -6.738 17 A_G31:A102_A A 31 ? A 102 ? 11 10 1 A C 34 1_555 A C 99 1_555 -3.894 -1.712 0.103 3.615 -13.184 4.430 18 A_C34:C99_A A 34 ? A 99 ? ? 1 1 A C 35 1_555 A G 98 1_555 0.444 -0.098 0.047 11.361 -5.674 1.223 19 A_C35:G98_A A 35 ? A 98 ? 19 1 1 A C 89 1_555 A U 48 1_555 -6.965 -4.711 0.938 -27.222 8.084 -4.846 20 A_C89:U48_A A 89 ? A 48 ? ? ? 1 A A 90 1_555 A U 47 1_555 0.087 -0.112 -0.224 -10.168 11.891 0.168 21 A_A90:U47_A A 90 ? A 47 ? 20 1 1 A C 91 1_555 A G 46 1_555 0.297 -0.209 -0.133 4.060 2.395 -1.192 22 A_C91:G46_A A 91 ? A 46 ? 19 1 1 A C 92 1_555 A G 45 1_555 0.473 0.092 -0.580 8.071 -9.560 6.239 23 A_C92:G45_A A 92 ? A 45 ? 19 1 1 A C 93 1_555 A G 44 1_555 0.107 -0.105 0.031 -2.320 4.736 -0.456 24 A_C93:G44_A A 93 ? A 44 ? 19 1 1 A C 96 1_555 A G 43 1_555 -0.166 -0.271 -0.038 -1.575 -1.411 -1.481 25 A_C96:G43_A A 96 ? A 43 ? 19 1 1 A A 95 1_555 A U 41 1_555 0.061 -0.243 0.267 7.600 -2.318 -0.326 26 A_A95:U41_A A 95 ? A 41 ? 20 1 1 A C 63 1_555 A G 57 1_555 0.575 -0.300 0.293 10.731 -0.011 7.341 27 A_C63:G57_A A 63 ? A 57 ? 19 1 1 A U 64 1_555 A A 56 1_555 -0.233 0.270 -0.154 5.974 -11.382 5.120 28 A_U64:A56_A A 64 ? A 56 ? 20 1 1 A G 65 1_555 A C 55 1_555 0.178 0.083 -0.769 -4.368 9.732 7.945 29 A_G65:C55_A A 65 ? A 55 ? 19 1 1 A C 66 1_555 A G 54 1_555 -0.260 0.043 -1.203 2.135 -15.794 -18.272 30 A_C66:G54_A A 66 ? A 54 ? ? 1 1 A A 67 1_555 A U 53 1_555 0.322 0.220 -0.270 -11.762 -7.051 0.153 31 A_A67:U53_A A 67 ? A 53 ? 20 1 1 A G 68 1_555 A C 52 1_555 -0.116 -0.130 -0.257 -4.648 -12.092 3.457 32 A_G68:C52_A A 68 ? A 52 ? 19 1 1 A U 69 1_555 A U 51 1_555 2.644 -1.863 -0.012 1.849 -17.934 11.171 33 A_U69:U51_A A 69 ? A 51 ? 16 1 1 A A 70 1_555 A G 88 1_555 -6.921 -4.360 -0.106 -2.991 -2.614 -7.834 34 A_A70:G88_A A 70 ? A 88 ? 11 10 1 A G 71 1_555 A C 87 1_555 -0.328 -0.271 -0.269 -0.708 -5.842 2.934 35 A_G71:C87_A A 71 ? A 87 ? 19 1 1 A G 72 1_555 A C 86 1_555 0.037 -0.155 -0.274 -7.215 -7.229 3.048 36 A_G72:C86_A A 72 ? A 86 ? 19 1 1 A G 73 1_555 A C 85 1_555 -0.066 -0.121 -0.130 -0.046 -0.641 -0.717 37 A_G73:C85_A A 73 ? A 85 ? 19 1 1 A A 74 1_555 A U 84 1_555 -0.177 -0.075 0.026 6.335 -7.587 0.082 38 A_A74:U84_A A 74 ? A 84 ? 20 1 1 A U 75 1_555 A G 83 1_555 2.286 -0.703 -0.299 13.823 -3.662 2.673 39 A_U75:G83_A A 75 ? A 83 ? 28 1 1 A G 119 1_555 A U 82 1_555 -2.443 -0.685 -0.281 0.688 -5.046 -4.088 40 A_G119:U82_A A 119 ? A 82 ? 28 1 1 A G 120 1_555 A C 81 1_555 -0.127 -0.133 -0.397 -5.651 -15.357 1.756 41 A_G120:C81_A A 120 ? A 81 ? 19 1 1 A A 121 1_555 A U 80 1_555 -0.245 0.018 -0.048 -4.422 -10.444 2.629 42 A_A121:U80_A A 121 ? A 80 ? 20 1 1 A A 122 1_555 A U 79 1_555 0.095 -0.163 0.283 -5.159 -4.662 -6.193 43 A_A122:U79_A A 122 ? A 79 ? 20 1 1 A G 123 1_555 A C 78 1_555 -0.243 -0.400 0.124 -0.998 -13.910 -3.456 44 A_G123:C78_A A 123 ? A 78 ? 19 1 1 A G 124 1_555 A C 77 1_555 -0.305 -0.276 -0.412 -11.749 -17.827 -0.942 45 A_G124:C77_A A 124 ? A 77 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 4 1_555 A A 113 1_555 A G 5 1_555 A C 112 1_555 0.588 -1.701 3.577 -2.088 6.535 37.930 -3.426 -1.162 3.215 9.955 3.181 38.523 1 AA_U4G5:C112A113_AA A 4 ? A 113 ? A 5 ? A 112 ? 1 A G 5 1_555 A C 112 1_555 A C 6 1_555 A G 111 1_555 -0.681 -2.243 3.068 -1.990 1.587 27.730 -5.013 0.974 2.978 3.303 4.142 27.844 2 AA_G5C6:G111C112_AA A 5 ? A 112 ? A 6 ? A 111 ? 1 A C 6 1_555 A G 111 1_555 A C 7 1_555 A G 110 1_555 -0.957 -1.977 3.338 -2.328 5.171 26.881 -5.408 1.456 2.983 10.969 4.938 27.462 3 AA_C6C7:G110G111_AA A 6 ? A 111 ? A 7 ? A 110 ? 1 A C 7 1_555 A G 110 1_555 A G 8 1_555 A A 109 1_555 -0.844 -0.920 3.076 -1.265 8.294 47.054 -1.746 0.950 2.904 10.293 1.570 47.754 4 AA_C7G8:A109G110_AA A 7 ? A 110 ? A 8 ? A 109 ? 1 A A 20 1_555 A C 15 1_555 A A 21 1_555 A C 14 1_555 0.957 -1.581 3.404 -7.120 6.380 47.080 -2.444 -1.733 3.011 7.892 8.807 47.986 5 AA_A20A21:C14C15_AA A 20 ? A 15 ? A 21 ? A 14 ? 1 A A 21 1_555 A C 14 1_555 A G 22 1_555 A C 13 1_555 0.023 -1.500 3.411 -7.245 10.625 45.371 -2.748 -0.622 2.971 13.458 9.177 47.066 6 AA_A21G22:C13C14_AA A 21 ? A 14 ? A 22 ? A 13 ? 1 A G 22 1_555 A C 13 1_555 A G 23 1_555 A C 12 1_555 -0.215 -2.037 3.811 0.773 7.799 37.169 -4.230 0.440 3.327 12.071 -1.197 37.957 7 AA_G22G23:C12C13_AA A 22 ? A 13 ? A 23 ? A 12 ? 1 A G 23 1_555 A C 12 1_555 A U 24 1_555 A U 11 1_555 0.141 -1.797 3.260 -6.642 2.341 33.571 -3.408 -1.256 3.048 3.999 11.344 34.281 8 AA_G23U24:U11C12_AA A 23 ? A 12 ? A 24 ? A 11 ? 1 A U 24 1_555 A U 11 1_555 A A 25 1_555 A G 108 1_555 0.384 0.020 3.256 -2.029 2.479 22.420 -0.840 -1.708 3.192 6.334 5.184 22.645 9 AA_U24A25:G108U11_AA A 24 ? A 11 ? A 25 ? A 108 ? 1 A A 25 1_555 A G 108 1_555 A C 26 1_555 A G 107 1_555 1.579 -0.934 3.240 1.972 6.607 62.194 -1.194 -1.433 3.180 6.375 -1.903 62.537 10 AA_A25C26:G107G108_AA A 25 ? A 108 ? A 26 ? A 107 ? 1 A C 26 1_555 A G 107 1_555 A G 27 1_555 A C 106 1_555 0.989 -2.498 3.862 5.448 6.829 28.268 -6.521 -0.642 3.310 13.577 -10.832 29.561 11 AA_C26G27:C106G107_AA A 26 ? A 107 ? A 27 ? A 106 ? 1 A G 27 1_555 A C 106 1_555 A G 28 1_555 A C 105 1_555 -0.824 -2.395 3.229 -3.144 3.548 25.303 -6.326 1.009 2.950 8.010 7.099 25.736 12 AA_G27G28:C105C106_AA A 27 ? A 106 ? A 28 ? A 105 ? 1 A G 28 1_555 A C 105 1_555 A A 29 1_555 A U 104 1_555 -0.051 -1.949 3.303 -1.933 0.421 30.117 -3.829 -0.297 3.272 0.808 3.715 30.181 13 AA_G28A29:U104C105_AA A 28 ? A 105 ? A 29 ? A 104 ? 1 A A 29 1_555 A U 104 1_555 A G 30 1_555 A C 103 1_555 0.193 -2.021 3.506 1.282 0.448 30.491 -3.935 -0.095 3.481 0.852 -2.436 30.520 14 AA_A29G30:C103U104_AA A 29 ? A 104 ? A 30 ? A 103 ? 1 A G 30 1_555 A C 103 1_555 A G 31 1_555 A A 102 1_555 -1.046 -0.829 3.513 2.011 7.455 61.548 -1.168 1.114 3.370 7.254 -1.957 61.983 15 AA_G30G31:A102C103_AA A 30 ? A 103 ? A 31 ? A 102 ? 1 A C 34 1_555 A C 99 1_555 A C 35 1_555 A G 98 1_555 0.180 -0.705 3.206 -1.455 3.923 50.045 -1.104 -0.313 3.139 4.628 1.717 50.209 16 AA_C34C35:G98C99_AA A 34 ? A 99 ? A 35 ? A 98 ? 1 A C 89 1_555 A U 48 1_555 A A 90 1_555 A U 47 1_555 0.816 -0.819 2.908 -0.083 13.695 53.595 -1.582 -0.885 2.641 14.914 0.090 55.192 17 AA_C89A90:U47U48_AA A 89 ? A 48 ? A 90 ? A 47 ? 1 A A 90 1_555 A U 47 1_555 A C 91 1_555 A G 46 1_555 0.256 -1.938 3.174 0.848 0.357 28.515 -4.011 -0.332 3.156 0.725 -1.721 28.530 18 AA_A90C91:G46U47_AA A 90 ? A 47 ? A 91 ? A 46 ? 1 A C 91 1_555 A G 46 1_555 A C 92 1_555 A G 45 1_555 0.914 -2.222 3.350 5.668 -0.811 27.978 -4.310 -0.484 3.524 -1.656 -11.569 28.547 19 AA_C91C92:G45G46_AA A 91 ? A 46 ? A 92 ? A 45 ? 1 A C 92 1_555 A G 45 1_555 A C 93 1_555 A G 44 1_555 -0.966 -2.246 3.704 -5.472 4.690 27.708 -5.720 0.584 3.410 9.589 11.188 28.612 20 AA_C92C93:G44G45_AA A 92 ? A 45 ? A 93 ? A 44 ? 1 A C 93 1_555 A G 44 1_555 A C 96 1_555 A G 43 1_555 -2.961 -1.409 3.128 -1.919 -0.123 47.931 -1.723 3.495 3.241 -0.152 2.361 47.967 21 AA_C93C96:G43G44_AA A 93 ? A 44 ? A 96 ? A 43 ? 1 A C 96 1_555 A G 43 1_555 A A 95 1_555 A U 41 1_555 0.462 -3.795 3.172 2.108 -0.618 -7.827 28.359 8.676 2.646 4.415 15.057 -8.129 22 AA_C96A95:U41G43_AA A 96 ? A 43 ? A 95 ? A 41 ? 1 A C 63 1_555 A G 57 1_555 A U 64 1_555 A A 56 1_555 0.224 -1.910 3.044 6.324 13.445 30.948 -4.986 0.440 2.067 23.569 -11.086 34.252 23 AA_C63U64:A56G57_AA A 63 ? A 57 ? A 64 ? A 56 ? 1 A U 64 1_555 A A 56 1_555 A G 65 1_555 A C 55 1_555 -0.007 -1.416 3.394 -0.493 18.998 31.205 -4.714 -0.053 2.201 31.884 0.827 36.413 24 AA_U64G65:C55A56_AA A 64 ? A 56 ? A 65 ? A 55 ? 1 A G 65 1_555 A C 55 1_555 A C 66 1_555 A G 54 1_555 -0.950 -1.852 3.244 4.078 6.843 31.329 -4.440 2.369 2.650 12.421 -7.403 32.301 25 AA_G65C66:G54C55_AA A 65 ? A 55 ? A 66 ? A 54 ? 1 A C 66 1_555 A G 54 1_555 A A 67 1_555 A U 53 1_555 0.810 -1.188 3.726 -7.280 22.444 33.191 -4.277 -2.000 2.292 34.412 11.162 40.530 26 AA_C66A67:U53G54_AA A 66 ? A 54 ? A 67 ? A 53 ? 1 A A 67 1_555 A U 53 1_555 A G 68 1_555 A C 52 1_555 0.525 -2.378 3.268 -0.781 2.271 20.471 -7.598 -1.794 2.967 6.361 2.188 20.610 27 AA_A67G68:C52U53_AA A 67 ? A 53 ? A 68 ? A 52 ? 1 A G 68 1_555 A C 52 1_555 A U 69 1_555 A U 51 1_555 0.211 -0.835 3.149 -1.664 3.165 46.469 -1.309 -0.399 3.080 4.004 2.105 46.598 28 AA_G68U69:U51C52_AA A 68 ? A 52 ? A 69 ? A 51 ? 1 A U 69 1_555 A U 51 1_555 A A 70 1_555 A G 88 1_555 0.716 -0.168 3.479 -8.041 0.885 21.605 -0.739 -4.680 3.010 2.261 20.546 23.052 29 AA_U69A70:G88U51_AA A 69 ? A 51 ? A 70 ? A 88 ? 1 A A 70 1_555 A G 88 1_555 A G 71 1_555 A C 87 1_555 1.015 -0.885 3.431 -0.143 4.986 57.099 -1.205 -1.066 3.347 5.205 0.150 57.298 30 AA_A70G71:C87G88_AA A 70 ? A 88 ? A 71 ? A 87 ? 1 A G 71 1_555 A C 87 1_555 A G 72 1_555 A C 86 1_555 0.688 -2.010 3.380 1.519 5.252 33.101 -4.338 -0.945 3.061 9.141 -2.643 33.537 31 AA_G71G72:C86C87_AA A 71 ? A 87 ? A 72 ? A 86 ? 1 A G 72 1_555 A C 86 1_555 A G 73 1_555 A C 85 1_555 -1.357 -2.418 3.121 -4.267 2.519 25.521 -6.037 1.899 3.054 5.635 9.545 25.990 32 AA_G72G73:C85C86_AA A 72 ? A 86 ? A 73 ? A 85 ? 1 A G 73 1_555 A C 85 1_555 A A 74 1_555 A U 84 1_555 -0.102 -1.697 3.191 -1.680 3.227 30.531 -3.802 -0.120 3.001 6.101 3.176 30.742 33 AA_G73A74:U84C85_AA A 73 ? A 85 ? A 74 ? A 84 ? 1 A A 74 1_555 A U 84 1_555 A U 75 1_555 A G 83 1_555 0.164 -1.445 3.110 1.591 5.894 38.538 -2.819 -0.069 2.871 8.862 -2.392 39.001 34 AA_A74U75:G83U84_AA A 74 ? A 84 ? A 75 ? A 83 ? 1 A U 75 1_555 A G 83 1_555 A G 119 1_555 A U 82 1_555 -3.037 -0.992 3.186 -8.845 12.044 33.142 -3.353 3.586 3.320 19.903 14.617 36.268 35 AA_U75G119:U82G83_AA A 75 ? A 83 ? A 119 ? A 82 ? 1 A G 119 1_555 A U 82 1_555 A G 120 1_555 A C 81 1_555 0.095 -1.244 3.509 -0.520 6.458 42.812 -2.347 -0.182 3.295 8.786 0.707 43.276 36 AA_G119G120:C81U82_AA A 119 ? A 82 ? A 120 ? A 81 ? 1 A G 120 1_555 A C 81 1_555 A A 121 1_555 A U 80 1_555 -0.019 -1.399 3.183 -2.936 7.244 31.869 -3.634 -0.436 2.797 12.950 5.250 32.789 37 AA_G120A121:U80C81_AA A 120 ? A 81 ? A 121 ? A 80 ? 1 A A 121 1_555 A U 80 1_555 A A 122 1_555 A U 79 1_555 -0.622 -1.371 3.258 -2.146 8.351 35.066 -3.343 0.714 2.898 13.608 3.496 36.078 38 AA_A121A122:U79U80_AA A 121 ? A 80 ? A 122 ? A 79 ? 1 A A 122 1_555 A U 79 1_555 A G 123 1_555 A C 78 1_555 0.364 -1.180 3.235 1.858 10.697 31.425 -3.744 -0.346 2.716 19.052 -3.309 33.203 39 AA_A122G123:C78U79_AA A 122 ? A 79 ? A 123 ? A 78 ? 1 A G 123 1_555 A C 78 1_555 A G 124 1_555 A C 77 1_555 0.790 -2.135 3.550 3.756 8.323 29.140 -5.734 -0.744 2.920 16.051 -7.245 30.508 40 AA_G123G124:C77C78_AA A 123 ? A 78 ? A 124 ? A 77 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1616265 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'SULFATE ION' SO4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QK8 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #