HEADER TRANSFERASE/TRANSFERASE INHIBITOR 28-NOV-18 6N82 TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH AN ALLOSTERIC TITLE 2 INHIBITOR YF-02037 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,M.A.SCHILLING,A.M.BERGHUIS REVDAT 3 11-OCT-23 6N82 1 REMARK REVDAT 2 27-NOV-19 6N82 1 JRNL REVDAT 1 06-NOV-19 6N82 0 JRNL AUTH Y.FENG,J.PARK,S.G.LI,R.BOUTIN,P.VIERECK,M.A.SCHILLING, JRNL AUTH 2 A.M.BERGHUIS,Y.S.TSANTRIZOS JRNL TITL CHIRALITY-DRIVEN MODE OF BINDING OF ALPHA-AMINOPHOSPHONIC JRNL TITL 2 ACID-BASED ALLOSTERIC INHIBITORS OF THE HUMAN FARNESYL JRNL TITL 3 PYROPHOSPHATE SYNTHASE (HFPPS). JRNL REF J.MED.CHEM. V. 62 9691 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31577901 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01104 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.87000 REMARK 3 B22 (A**2) : -3.87000 REMARK 3 B33 (A**2) : 7.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2870 ; 0.017 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2535 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3901 ; 1.867 ; 1.690 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5897 ; 1.136 ; 1.663 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;34.306 ;23.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;16.254 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.833 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3214 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 560 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1372 ; 2.689 ; 4.312 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1371 ; 2.678 ; 4.310 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 3.818 ; 6.449 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1716 ; 3.819 ; 6.451 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1497 ; 3.945 ; 4.900 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1493 ; 3.789 ; 4.888 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2181 ; 5.226 ; 7.208 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3437 ; 9.129 ;53.235 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3417 ; 8.974 ;52.959 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 8 F 167 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3886 84.8240 15.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.1474 REMARK 3 T33: 0.1084 T12: -0.0716 REMARK 3 T13: -0.0786 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 5.2709 L22: 3.1733 REMARK 3 L33: 2.3698 L12: -0.8260 REMARK 3 L13: -1.6220 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: 0.5122 S13: -0.3120 REMARK 3 S21: -0.4347 S22: 0.1500 S23: 0.5439 REMARK 3 S31: 0.2056 S32: -0.5614 S33: -0.0768 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 168 F 276 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1824 79.6762 35.9305 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.2727 REMARK 3 T33: 0.0830 T12: -0.0097 REMARK 3 T13: 0.0099 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 5.0856 L22: 3.6141 REMARK 3 L33: 3.3978 L12: 0.1694 REMARK 3 L13: -0.0277 L23: -2.1076 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: -0.5865 S13: -0.5822 REMARK 3 S21: 0.2465 S22: -0.2012 S23: -0.0836 REMARK 3 S31: 0.2641 S32: 0.4039 S33: 0.1053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 277 F 300 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1012 64.0171 45.7133 REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 1.1135 REMARK 3 T33: 0.8001 T12: 0.3716 REMARK 3 T13: -0.0936 T23: 0.4997 REMARK 3 L TENSOR REMARK 3 L11: 2.7004 L22: 4.6117 REMARK 3 L33: 7.7278 L12: 0.5919 REMARK 3 L13: 2.1270 L23: -2.1138 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: -0.4020 S13: -0.6121 REMARK 3 S21: 0.4460 S22: -0.1506 S23: -1.0087 REMARK 3 S31: 1.0191 S32: 1.5250 S33: 0.1011 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 301 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6400 74.9779 41.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.2783 REMARK 3 T33: 0.2685 T12: -0.0392 REMARK 3 T13: 0.0904 T23: 0.0958 REMARK 3 L TENSOR REMARK 3 L11: 6.6279 L22: 6.0825 REMARK 3 L33: 3.8151 L12: -4.2577 REMARK 3 L13: 3.0495 L23: -3.8249 REMARK 3 S TENSOR REMARK 3 S11: 0.1945 S12: -0.3672 S13: -0.6025 REMARK 3 S21: 0.2755 S22: -0.1450 S23: 0.4046 REMARK 3 S31: 0.4172 S32: 0.1009 S33: -0.0495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6N82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000237116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 78.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 1.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4XQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.36M TRI-SODIUM CITRATE 15% (V/V) REMARK 280 GLYCEROL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.76500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.46000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.38250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.46000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.14750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.46000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.38250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.46000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.14750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 110.92000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 110.92000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.76500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 GLN F 180 REMARK 465 GLY F 181 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP F 8 CG OD1 OD2 REMARK 470 MET F 33 CG SD CE REMARK 470 LYS F 57 CD CE NZ REMARK 470 GLU F 73 CG CD OE1 OE2 REMARK 470 ARG F 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 76 NZ REMARK 470 VAL F 183 CG1 CG2 REMARK 470 LYS F 191 CD CE NZ REMARK 470 LYS F 223 CE NZ REMARK 470 LYS F 287 CG CD CE NZ REMARK 470 GLU F 288 CG CD OE1 OE2 REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 294 CG CD OE1 OE2 REMARK 470 GLU F 296 CG CD OE1 OE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 307 CD OE1 OE2 REMARK 470 LYS F 350 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 PO4 F 408 O HOH F 501 2.00 REMARK 500 OD1 ASP F 31 O HOH F 502 2.07 REMARK 500 O HOH F 601 O HOH F 612 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG F 26 NE ARG F 26 CZ 0.083 REMARK 500 ARG F 26 CZ ARG F 26 NH2 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG F 26 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG F 26 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG F 44 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP F 107 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG F 141 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU F 37 -45.02 -27.96 REMARK 500 GLN F 77 66.51 -104.40 REMARK 500 VAL F 124 -68.87 -97.55 REMARK 500 THR F 201 -53.43 -121.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG F 141 0.18 SIDE CHAIN REMARK 500 ARG F 148 0.13 SIDE CHAIN REMARK 500 ARG F 187 0.15 SIDE CHAIN REMARK 500 ARG F 346 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YF7 F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YF7 F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE F 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO F 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 408 DBREF 6N82 F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 6N82 MET F -21 UNP P14324 INITIATING METHIONINE SEQADV 6N82 GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 6N82 SER F -19 UNP P14324 EXPRESSION TAG SEQADV 6N82 SER F -18 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 6N82 SER F -11 UNP P14324 EXPRESSION TAG SEQADV 6N82 SER F -10 UNP P14324 EXPRESSION TAG SEQADV 6N82 GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 6N82 ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 6N82 GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 6N82 ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 6N82 LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 6N82 TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 6N82 PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 6N82 GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 6N82 GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 6N82 HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET GOL F 401 6 HET YF7 F 402 31 HET YF7 F 403 31 HET PGE F 404 10 HET EDO F 405 4 HET CL F 406 1 HET CL F 407 1 HET PO4 F 408 5 HETNAM GOL GLYCEROL HETNAM YF7 [(1S)-1-{[6-(3-CHLORO-4-METHYLPHENYL)THIENO[2,3- HETNAM 2 YF7 D]PYRIMIDIN-4-YL]AMINO}-2-(3-FLUOROPHENYL) HETNAM 3 YF7 ETHYL]PHOSPHONIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 YF7 2(C21 H18 CL F N3 O3 P S) FORMUL 5 PGE C6 H14 O4 FORMUL 6 EDO C2 H6 O2 FORMUL 7 CL 2(CL 1-) FORMUL 9 PO4 O4 P 3- FORMUL 10 HOH *115(H2 O) HELIX 1 AA1 ASP F 8 THR F 29 1 22 HELIX 2 AA2 GLU F 30 MET F 33 5 4 HELIX 3 AA3 HIS F 35 GLU F 37 5 3 HELIX 4 AA4 ILE F 38 ALA F 53 1 16 HELIX 5 AA5 TYR F 58 VAL F 72 1 15 HELIX 6 AA6 GLU F 73 GLN F 77 5 5 HELIX 7 AA7 ASP F 78 ASP F 107 1 30 HELIX 8 AA8 TRP F 118 LYS F 121 5 4 HELIX 9 AA9 VAL F 124 LEU F 126 5 3 HELIX 10 AB1 ASP F 127 ARG F 148 1 22 HELIX 11 AB2 TYR F 152 ALA F 178 1 27 HELIX 12 AB3 THR F 189 THR F 201 1 13 HELIX 13 AB4 THR F 201 PHE F 206 1 6 HELIX 14 AB5 PHE F 206 ALA F 217 1 12 HELIX 15 AB6 GLY F 221 GLY F 250 1 30 HELIX 16 AB7 ASP F 251 GLY F 256 1 6 HELIX 17 AB8 SER F 268 ALA F 278 1 11 HELIX 18 AB9 THR F 279 TYR F 290 1 12 HELIX 19 AC1 GLU F 294 LEU F 308 1 15 HELIX 20 AC2 ASP F 309 ALA F 333 1 25 HELIX 21 AC3 PRO F 337 TYR F 349 1 13 SHEET 1 AA1 2 THR F 111 ARG F 112 0 SHEET 2 AA1 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 CISPEP 1 ALA F 334 PRO F 335 0 13.01 SITE 1 AC1 7 ARG F 141 GLU F 158 LEU F 161 GLN F 162 SITE 2 AC1 7 HOH F 529 HOH F 531 HOH F 549 SITE 1 AC2 9 LYS F 57 ASN F 59 SER F 205 PHE F 206 SITE 2 AC2 9 ASP F 243 THR F 255 LEU F 344 PO4 F 408 SITE 3 AC2 9 HOH F 533 SITE 1 AC3 13 THR F 111 GLY F 114 GLN F 115 ILE F 116 SITE 2 AC3 13 ILE F 258 LEU F 315 GLU F 318 TYR F 322 SITE 3 AC3 13 LEU F 342 ALA F 345 ARG F 346 TYR F 349 SITE 4 AC3 13 LYS F 350 SITE 1 AC4 8 LEU F 100 ASP F 103 ASN F 130 ASN F 133 SITE 2 AC4 8 THR F 167 GLN F 171 LYS F 200 TYR F 204 SITE 1 AC5 2 LYS F 230 HIS F 324 SITE 1 AC6 1 ASP F 80 SITE 1 AC7 3 GLN F 166 PHE F 203 LYS F 229 SITE 1 AC8 7 LYS F 57 TYR F 58 ASN F 59 ARG F 60 SITE 2 AC8 7 YF7 F 402 HOH F 501 HOH F 503 CRYST1 110.920 110.920 77.530 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012898 0.00000