HEADER PEPTIDE BINDING PROTEIN 28-NOV-18 6N87 TITLE PLASMODIUM FALCIPARUM FVO APICAL MEMBRANE ANTIGEN 1 (AMA1) BOUND TO TITLE 2 MTSL SPIN-LABELLED CYCLISED RON2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEMBRANE ANTIGEN-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BACKBONE-CYCLISED PEPTIDE BCRON2HP; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: AMA-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DI+DII; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 12 ORGANISM_TAXID: 5833 KEYWDS AMA1, APICAL MEMBRANE ANTIGEN 1, MALARIA, RON2, PARAMAGNETIC PROBE, KEYWDS 2 PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MCGOWAN,N.DRINKWATER REVDAT 4 11-OCT-23 6N87 1 REMARK REVDAT 3 08-JAN-20 6N87 1 REMARK REVDAT 2 20-MAR-19 6N87 1 JRNL REVDAT 1 30-JAN-19 6N87 0 JRNL AUTH M.AKTER,N.DRINKWATER,S.M.DEVINE,S.C.DREW,B.KRISHNARJUNA, JRNL AUTH 2 C.O.DEBONO,G.WANG,M.J.SCANLON,P.J.SCAMMELLS,S.MCGOWAN, JRNL AUTH 3 C.A.MACRAILD,R.S.NORTON JRNL TITL IDENTIFICATION OF THE BINDING SITE OF APICAL MEMBRANE JRNL TITL 2 ANTIGEN 1 (AMA1) INHIBITORS USING A PARAMAGNETIC PROBE. JRNL REF CHEMMEDCHEM V. 14 603 2019 JRNL REFN ESSN 1860-7187 JRNL PMID 30653832 JRNL DOI 10.1002/CMDC.201800802 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 51478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8009 - 4.0812 1.00 3045 143 0.1583 0.1752 REMARK 3 2 4.0812 - 3.2398 1.00 2969 118 0.1426 0.1623 REMARK 3 3 3.2398 - 2.8304 1.00 2921 142 0.1539 0.1898 REMARK 3 4 2.8304 - 2.5716 1.00 2925 133 0.1574 0.1720 REMARK 3 5 2.5716 - 2.3873 1.00 2890 132 0.1476 0.2064 REMARK 3 6 2.3873 - 2.2466 1.00 2898 164 0.1405 0.1496 REMARK 3 7 2.2466 - 2.1341 1.00 2879 159 0.1405 0.1726 REMARK 3 8 2.1341 - 2.0412 1.00 2855 151 0.1479 0.1730 REMARK 3 9 2.0412 - 1.9626 1.00 2911 129 0.1478 0.1973 REMARK 3 10 1.9626 - 1.8949 1.00 2863 144 0.1656 0.1933 REMARK 3 11 1.8949 - 1.8356 1.00 2883 155 0.1707 0.1944 REMARK 3 12 1.8356 - 1.7832 1.00 2886 126 0.1746 0.2395 REMARK 3 13 1.7832 - 1.7362 1.00 2864 165 0.1924 0.2408 REMARK 3 14 1.7362 - 1.6939 1.00 2875 144 0.2018 0.2172 REMARK 3 15 1.6939 - 1.6554 1.00 2834 147 0.2124 0.2536 REMARK 3 16 1.6554 - 1.6201 1.00 2873 153 0.2371 0.2354 REMARK 3 17 1.6201 - 1.5877 0.93 2666 136 0.2889 0.3188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2659 REMARK 3 ANGLE : 1.387 3623 REMARK 3 CHIRALITY : 0.092 378 REMARK 3 PLANARITY : 0.010 476 REMARK 3 DIHEDRAL : 5.249 2147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 71.3163 8.0583 25.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0726 REMARK 3 T33: 0.0939 T12: -0.0036 REMARK 3 T13: -0.0121 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5241 L22: 0.4286 REMARK 3 L33: 0.6030 L12: 0.0523 REMARK 3 L13: -0.2439 L23: -0.1849 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.1729 S13: 0.0501 REMARK 3 S21: -0.0690 S22: 0.0152 S23: 0.0123 REMARK 3 S31: 0.0119 S32: 0.0233 S33: 0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1000238335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.588 REMARK 200 RESOLUTION RANGE LOW (A) : 40.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG400, 0.1 M TRIS PH 8.4, 20% REMARK 280 ISOPROPANOL, 0.1 M SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.66376 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.87750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.90340 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.66376 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.87750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 70.90340 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 103 REMARK 465 ASN A 104 REMARK 465 TYR A 105 REMARK 465 MET A 106 REMARK 465 GLY A 107 REMARK 465 ASN A 231 REMARK 465 ASN A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 GLN A 267 REMARK 465 SER A 268 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 GLU A 354 REMARK 465 GLN A 355 REMARK 465 HIS A 356 REMARK 465 LEU A 357 REMARK 465 THR A 358 REMARK 465 ASP A 359 REMARK 465 ALA A 384 REMARK 465 PHE A 385 REMARK 465 LYS A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 ASN A 160 CG OD1 ND2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 ASN A 228 CG OD1 ND2 REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 PRO A 260 CG CD REMARK 470 ASN A 271 CG OD1 ND2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 TYR A 353 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 360 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 361 CG CD OE1 OE2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 ILE A 363 CG1 CG2 CD1 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 285 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CYS C 1 C PRO C 13 1.35 REMARK 500 OE2 GLU A 299 O HOH A 501 1.40 REMARK 500 OE2 GLU A 213 O HOH A 502 1.89 REMARK 500 O HOH A 731 O HOH A 732 2.03 REMARK 500 O HOH A 644 O HOH A 727 2.08 REMARK 500 OE1 GLU A 405 O HOH A 503 2.10 REMARK 500 O HOH A 545 O HOH A 667 2.12 REMARK 500 O HOH A 737 O HOH A 782 2.14 REMARK 500 N CYS C 1 O PRO C 13 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 530 O HOH A 813 4655 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 13 CD PRO C 13 N 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 219 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO C 13 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO C 13 CA - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO C 13 CA - C - O ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 131 53.33 -141.17 REMARK 500 ASN A 258 28.78 -151.92 REMARK 500 ARG A 304 -58.95 -142.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE C 12 PRO C 13 -146.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 824 DISTANCE = 6.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTN C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6N7Q RELATED DB: PDB REMARK 900 6N7Q CONTAINS THE SAME COMPLEX WITHOUT THE MTSL SPIN LABEL ON REMARK 900 PEPTIDE DBREF 6N87 A 104 438 UNP Q1PBJ5 Q1PBJ5_PLAFA 22 356 DBREF 6N87 C 1 13 PDB 6N87 6N87 1 13 SEQADV 6N87 GLY A 103 UNP Q1PBJ5 EXPRESSION TAG SEQRES 1 A 336 GLY ASN TYR MET GLY ASN PRO TRP THR GLU TYR MET ALA SEQRES 2 A 336 LYS TYR ASP ILE GLU GLU VAL HIS GLY SER GLY ILE ARG SEQRES 3 A 336 VAL ASP LEU GLY GLU ASP ALA GLU VAL ALA GLY THR GLN SEQRES 4 A 336 TYR ARG LEU PRO SER GLY LYS CYS PRO VAL PHE GLY LYS SEQRES 5 A 336 GLY ILE ILE ILE GLU ASN SER ASN THR THR PHE LEU LYS SEQRES 6 A 336 PRO VAL ALA THR GLY ASN GLN ASP LEU LYS ASP GLY GLY SEQRES 7 A 336 PHE ALA PHE PRO PRO THR ASN PRO LEU ILE SER PRO MET SEQRES 8 A 336 THR LEU ASN GLY MET ARG ASP PHE TYR LYS ASN ASN GLU SEQRES 9 A 336 TYR VAL LYS ASN LEU ASP GLU LEU THR LEU CYS SER ARG SEQRES 10 A 336 HIS ALA GLY ASN MET ASN PRO ASP ASN ASP LYS ASN SER SEQRES 11 A 336 ASN TYR LYS TYR PRO ALA VAL TYR ASP TYR ASN ASP LYS SEQRES 12 A 336 LYS CYS HIS ILE LEU TYR ILE ALA ALA GLN GLU ASN ASN SEQRES 13 A 336 GLY PRO ARG TYR CYS ASN LYS ASP GLN SER LYS ARG ASN SEQRES 14 A 336 SER MET PHE CYS PHE ARG PRO ALA LYS ASP LYS LEU PHE SEQRES 15 A 336 GLU ASN TYR THR TYR LEU SER LYS ASN VAL VAL ASP ASN SEQRES 16 A 336 TRP GLU GLU VAL CYS PRO ARG LYS ASN LEU GLU ASN ALA SEQRES 17 A 336 LYS PHE GLY LEU TRP VAL ASP GLY ASN CYS GLU ASP ILE SEQRES 18 A 336 PRO HIS VAL ASN GLU PHE SER ALA ASN ASP LEU PHE GLU SEQRES 19 A 336 CYS ASN LYS LEU VAL PHE GLU LEU SER ALA SER ASP GLN SEQRES 20 A 336 PRO LYS GLN TYR GLU GLN HIS LEU THR ASP TYR GLU LYS SEQRES 21 A 336 ILE LYS GLU GLY PHE LYS ASN LYS ASN ALA SER MET ILE SEQRES 22 A 336 LYS SER ALA PHE LEU PRO THR GLY ALA PHE LYS ALA ASP SEQRES 23 A 336 ARG TYR LYS SER HIS GLY LYS GLY TYR ASN TRP GLY ASN SEQRES 24 A 336 TYR ASN ARG GLU THR GLN LYS CYS GLU ILE PHE ASN VAL SEQRES 25 A 336 LYS PRO THR CYS LEU ILE ASN ASN SER SER TYR ILE ALA SEQRES 26 A 336 THR THR ALA LEU SER HIS PRO ILE GLU VAL GLU SEQRES 1 C 13 CYS TRP THR THR ARG MET SER PRO PRO MET GLN ILE PRO HET MTN C 101 27 HETNAM MTN S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5-DIHYDRO-1H-PYRROL-3- HETNAM 2 MTN YL)METHYL] METHANESULFONOTHIOATE HETSYN MTN MTSL FORMUL 3 MTN C10 H18 N O3 S2 FORMUL 4 HOH *331(H2 O) HELIX 1 AA1 TRP A 110 ALA A 115 1 6 HELIX 2 AA2 ASP A 118 HIS A 123 1 6 HELIX 3 AA3 ASP A 175 GLY A 179 5 5 HELIX 4 AA4 LEU A 195 TYR A 202 1 8 HELIX 5 AA5 ASP A 212 ASN A 223 1 12 HELIX 6 AA6 LYS A 282 GLU A 285 5 4 HELIX 7 AA7 ASN A 297 CYS A 302 1 6 HELIX 8 AA8 ASP A 333 SER A 345 1 13 HELIX 9 AA9 GLU A 361 GLY A 366 1 6 HELIX 10 AB1 ASN A 369 LEU A 380 1 12 HELIX 11 AB2 ALA A 387 LYS A 391 5 5 SHEET 1 AA1 2 GLU A 133 VAL A 137 0 SHEET 2 AA1 2 THR A 140 LEU A 144 -1 O THR A 140 N VAL A 137 SHEET 1 AA2 5 VAL A 151 PHE A 152 0 SHEET 2 AA2 5 TYR A 287 LEU A 290 -1 O TYR A 289 N VAL A 151 SHEET 3 AA2 5 ALA A 238 ASP A 241 -1 N ALA A 238 O LEU A 290 SHEET 4 AA2 5 LYS A 246 ILE A 249 -1 O HIS A 248 N VAL A 239 SHEET 5 AA2 5 MET A 193 THR A 194 -1 N MET A 193 O CYS A 247 SHEET 1 AA3 2 LYS A 154 ILE A 158 0 SHEET 2 AA3 2 PHE A 276 LYS A 280 -1 O ARG A 277 N ILE A 157 SHEET 1 AA4 3 MET A 224 ASN A 225 0 SHEET 2 AA4 3 TRP C 2 THR C 4 -1 O THR C 3 N ASN A 225 SHEET 3 AA4 3 GLN C 11 ILE C 12 -1 O ILE C 12 N TRP C 2 SHEET 1 AA5 6 ASN A 319 ASP A 322 0 SHEET 2 AA5 6 ASN A 306 VAL A 316 -1 N VAL A 316 O ASN A 319 SHEET 3 AA5 6 CYS A 418 THR A 429 -1 O ILE A 420 N LYS A 311 SHEET 4 AA5 6 TRP A 399 ASN A 403 -1 N TYR A 402 O ILE A 426 SHEET 5 AA5 6 LYS A 408 PHE A 412 -1 O LYS A 408 N ASN A 403 SHEET 6 AA5 6 ASN A 327 SER A 330 -1 N PHE A 329 O CYS A 409 SHEET 1 AA6 3 ASN A 319 ASP A 322 0 SHEET 2 AA6 3 ASN A 306 VAL A 316 -1 N VAL A 316 O ASN A 319 SHEET 3 AA6 3 VAL A 437 GLU A 438 1 O GLU A 438 N GLU A 308 SSBOND 1 CYS A 149 CYS A 302 1555 1555 2.05 SSBOND 2 CYS A 217 CYS A 247 1555 1555 2.01 SSBOND 3 CYS A 263 CYS A 275 1555 1555 2.01 SSBOND 4 CYS A 320 CYS A 418 1555 1555 2.02 SSBOND 5 CYS A 337 CYS A 409 1555 1555 2.07 LINK SG CYS C 1 S1 MTN C 101 1555 1555 2.10 CISPEP 1 ASN A 187 PRO A 188 0 3.68 CISPEP 2 SER A 191 PRO A 192 0 -8.80 CISPEP 3 SER C 7 PRO C 8 0 1.19 SITE 1 AC1 6 PRO A 226 TYR A 251 LYS A 364 HOH A 524 SITE 2 AC1 6 CYS C 1 TRP C 2 CRYST1 71.567 37.755 142.176 90.00 94.13 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013973 0.000000 0.001010 0.00000 SCALE2 0.000000 0.026487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007052 0.00000