HEADER HYDROLASE/HYDROLASE INHIBITOR 03-DEC-18 6N9J TITLE X-RAY STRUCTURE OF A SECRETED C11 CYSTEINE PROTEASE FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON IN COMPLEX WITH AN IRREVERSIBLE PEPTIDE INHIBITOR CAVEAT 6N9J THE DISTANCE BETWEEN RESIDUE B THR 146 AND RESIDUE B TRP 148 CAVEAT 2 6N9J IS 18.99 ANGSTROM. BUT THERE IS ONLY 1 RESIDUE (NOT ENOUGH CAVEAT 3 6N9J SEQUENCE) TO COVER THE GAP REGION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLOSTRIPAIN-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COVALENTLY BOUND PEPTIDE INHIBITOR; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 GENE: BT_1308; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS C11 PROTEASE, SECRETED, COVALENT PEPTIDE INHIBITOR, MICROBIOME, KEYWDS 2 COMMENSAL, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.W.WOLAN,G.E.GONZALEZ-PAEZ,E.J.RONCASE REVDAT 4 15-NOV-23 6N9J 1 LINK ATOM REVDAT 3 11-OCT-23 6N9J 1 REMARK REVDAT 2 24-JUN-20 6N9J 1 JRNL REVDAT 1 11-DEC-19 6N9J 0 JRNL AUTH E.J.RONCASE,G.E.GONZALEZ-PAEZ,D.W.WOLAN JRNL TITL X-RAY STRUCTURES OF TWO BACTEROIDES THETAIOTAOMICRON C11 JRNL TITL 2 PROTEASES IN COMPLEX WITH PEPTIDE-BASED INHIBITORS. JRNL REF BIOCHEMISTRY V. 58 1728 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 30835452 JRNL DOI 10.1021/ACS.BIOCHEM.9B00098 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 40726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4948 - 5.3497 0.99 2822 134 0.1905 0.2052 REMARK 3 2 5.3497 - 4.2470 0.99 2743 151 0.1617 0.2099 REMARK 3 3 4.2470 - 3.7103 0.99 2757 151 0.1633 0.2065 REMARK 3 4 3.7103 - 3.3712 0.98 2717 123 0.1664 0.2186 REMARK 3 5 3.3712 - 3.1296 0.98 2726 118 0.1883 0.2339 REMARK 3 6 3.1296 - 2.9451 0.98 2694 137 0.1904 0.2455 REMARK 3 7 2.9451 - 2.7976 0.98 2682 151 0.1938 0.2418 REMARK 3 8 2.7976 - 2.6758 0.96 2655 141 0.1971 0.2669 REMARK 3 9 2.6758 - 2.5728 0.96 2642 152 0.1973 0.2658 REMARK 3 10 2.5728 - 2.4841 0.95 2592 159 0.1959 0.2350 REMARK 3 11 2.4841 - 2.4064 0.93 2560 144 0.1898 0.2570 REMARK 3 12 2.4064 - 2.3376 0.89 2423 152 0.1850 0.2490 REMARK 3 13 2.3376 - 2.2761 0.86 2312 147 0.1902 0.2414 REMARK 3 14 2.2761 - 2.2205 0.81 2220 122 0.1865 0.2734 REMARK 3 15 2.2205 - 2.1701 0.75 2084 115 0.1751 0.2398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5731 REMARK 3 ANGLE : 0.990 7805 REMARK 3 CHIRALITY : 0.039 840 REMARK 3 PLANARITY : 0.005 1014 REMARK 3 DIHEDRAL : 12.269 1989 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 30:144)) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7928 -15.9420 -5.0048 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.2083 REMARK 3 T33: 0.2013 T12: -0.0006 REMARK 3 T13: -0.0071 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.4549 L22: 1.6606 REMARK 3 L33: 0.9287 L12: 0.0128 REMARK 3 L13: 0.5242 L23: -0.2931 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.1105 S13: 0.0075 REMARK 3 S21: 0.0022 S22: 0.0173 S23: -0.2535 REMARK 3 S31: 0.0529 S32: 0.3636 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 148:396)) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0246 -17.3559 -1.4844 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1137 REMARK 3 T33: 0.1320 T12: -0.0037 REMARK 3 T13: 0.0114 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.3990 L22: 0.7969 REMARK 3 L33: 1.4338 L12: 0.2800 REMARK 3 L13: 0.0715 L23: 0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.0520 S13: 0.1255 REMARK 3 S21: 0.0820 S22: -0.0275 S23: 0.0667 REMARK 3 S31: 0.0162 S32: -0.1255 S33: 0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 31:146)) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7809 7.2582 -29.8529 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.2236 REMARK 3 T33: 0.2123 T12: -0.0084 REMARK 3 T13: -0.0086 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.6114 L22: 1.2886 REMARK 3 L33: 0.9378 L12: -0.1090 REMARK 3 L13: 0.0699 L23: -0.4389 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: 0.1944 S13: 0.0138 REMARK 3 S21: -0.0310 S22: 0.0117 S23: -0.2209 REMARK 3 S31: -0.0687 S32: 0.3283 S33: -0.0013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 148:396)) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0645 8.8722 -32.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1177 REMARK 3 T33: 0.1243 T12: -0.0002 REMARK 3 T13: -0.0145 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.0974 L22: 1.0402 REMARK 3 L33: 1.2939 L12: -0.0193 REMARK 3 L13: -0.0188 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0016 S13: -0.0628 REMARK 3 S21: -0.0769 S22: 0.0043 S23: 0.0889 REMARK 3 S31: -0.0236 S32: -0.0899 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : RH COATED FLAT REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40736 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 49.482 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.23800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YEC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 1M LICL, 26% PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.48200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 27 REMARK 465 THR A 28 REMARK 465 ASN A 29 REMARK 465 SER A 145 REMARK 465 THR A 146 REMARK 465 ARG A 147 REMARK 465 ALA A 284 REMARK 465 VAL A 285 REMARK 465 SER A 286 REMARK 465 MET A 287 REMARK 465 GLN A 288 REMARK 465 GLN A 289 REMARK 465 SER A 290 REMARK 465 HIS A 291 REMARK 465 ASN A 292 REMARK 465 ILE A 293 REMARK 465 ASP A 294 REMARK 465 SER A 396 REMARK 465 VAL A 397 REMARK 465 ASP A 398 REMARK 465 TRP A 399 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 GLU B 25 REMARK 465 ASP B 26 REMARK 465 LYS B 27 REMARK 465 THR B 28 REMARK 465 ASN B 29 REMARK 465 TYR B 30 REMARK 465 ARG B 147 REMARK 465 ALA B 284 REMARK 465 VAL B 285 REMARK 465 SER B 286 REMARK 465 MET B 287 REMARK 465 GLN B 288 REMARK 465 GLN B 289 REMARK 465 SER B 290 REMARK 465 HIS B 291 REMARK 465 ASN B 292 REMARK 465 ILE B 293 REMARK 465 ASP B 398 REMARK 465 TRP B 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 ILE A 295 CG1 CG2 CD1 REMARK 470 SER A 296 OG REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 ILE A 319 CG1 CG2 CD1 REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 THR B 146 OG1 CG2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 GLN B 282 CG CD OE1 NE2 REMARK 470 ILE B 295 CG1 CG2 CD1 REMARK 470 GLN B 317 CG CD OE1 NE2 REMARK 470 SER B 351 OG REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 ASP B 393 CG OD1 OD2 REMARK 470 VAL B 397 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 387 O HOH B 401 2.14 REMARK 500 OH TYR B 200 O HOH B 402 2.18 REMARK 500 O HOH B 499 O HOH B 560 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 -172.18 176.27 REMARK 500 SER A 78 -115.07 -73.15 REMARK 500 LYS A 89 -91.40 -126.56 REMARK 500 SER A 133 -167.03 -179.86 REMARK 500 ASP A 136 50.39 -153.76 REMARK 500 THR A 206 -162.15 -113.66 REMARK 500 ARG A 305 -127.80 -122.01 REMARK 500 ASN B 43 -161.50 -170.51 REMARK 500 SER B 78 -128.80 -79.71 REMARK 500 SER B 133 -165.43 -179.53 REMARK 500 ASP B 136 52.60 -156.30 REMARK 500 THR B 206 -154.25 -110.64 REMARK 500 SER B 227 66.17 36.59 REMARK 500 ASN B 255 85.79 -151.46 REMARK 500 ARG B 305 -121.61 -124.13 REMARK 500 GLN B 320 135.21 -39.72 REMARK 500 SER B 396 30.09 -94.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU D 403 -10.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 6N9J A 24 399 UNP Q8A866 Q8A866_BACTN 24 399 DBREF 6N9J C 401 405 PDB 6N9J 6N9J 401 405 DBREF 6N9J B 24 399 UNP Q8A866 Q8A866_BACTN 24 399 DBREF 6N9J D 401 405 PDB 6N9J 6N9J 401 405 SEQADV 6N9J GLY A 23 UNP Q8A866 EXPRESSION TAG SEQADV 6N9J GLY B 23 UNP Q8A866 EXPRESSION TAG SEQRES 1 A 377 GLY GLU GLU ASP LYS THR ASN TYR GLY SER ARG THR VAL SEQRES 2 A 377 LEU VAL TYR ILE ALA GLY ASP ASN SER LEU SER ARG PHE SEQRES 3 A 377 ALA SER GLU ASP LEU ASN GLU MET ILE GLU GLY MET GLN SEQRES 4 A 377 SER VAL ASP ASP ASN HIS ASN ASN LEU LEU VAL TYR MET SEQRES 5 A 377 ASP LYS GLY SER ASN PRO LYS LEU ILE ARG LEU ARG LYS SEQRES 6 A 377 ASP LYS ASP VAL VAL VAL GLN ASP VAL ILE ALA THR TYR SEQRES 7 A 377 ASP ALA GLN ASN SER VAL ASP VAL ASP VAL MET LYS ASN SEQRES 8 A 377 VAL PHE THR THR ALA PHE SER HIS TYR PRO ALA ASP SER SEQRES 9 A 377 TYR GLY VAL VAL PHE TRP SER HIS GLY ASP GLY TRP LEU SEQRES 10 A 377 PRO TYR ASN ASN PRO SER THR ARG TRP TRP GLY GLN ASP SEQRES 11 A 377 THR GLY ASN GLY ASP ASN ARG MET ASN ILE PRO ASP LEU SEQRES 12 A 377 ASN GLU ALA LEU SER VAL ALA PRO HIS PHE ASP PHE ILE SEQRES 13 A 377 LEU PHE ASP ALA CYS TYR MET GLN SER VAL GLU VAL VAL SEQRES 14 A 377 TYR GLN LEU ARG ASN ARG ALA ASP TYR PHE ILE GLY SER SEQRES 15 A 377 PRO THR GLU ILE PRO GLY PRO GLY ALA PRO TYR GLU VAL SEQRES 16 A 377 VAL VAL PRO ALA LEU PHE ALA VAL ASN SER PRO ALA VAL SEQRES 17 A 377 SER ILE ALA GLU ASN TYR TYR SER VAL TYR ALA LYS LYS SEQRES 18 A 377 TYR ASN SER THR GLY ALA GLY ILE SER ASN GLU ASN TRP SEQRES 19 A 377 THR GLY GLY VAL SER ILE SER VAL ILE LYS SER SER GLU SEQRES 20 A 377 LEU SER ALA LEU ALA ALA ALA THR ARG ASP VAL LEU GLN SEQRES 21 A 377 THR ALA VAL SER MET GLN GLN SER HIS ASN ILE ASP ILE SEQRES 22 A 377 SER SER ILE LEU CYS TYR ASP PRO LEU ARG GLU ASN ASN SEQRES 23 A 377 TYR HIS ASP LEU MET GLY LEU MET GLN SER ILE GLN GLY SEQRES 24 A 377 ASN SER GLN ALA PHE ASN HIS TYR LYS GLU MET TYR LYS SEQRES 25 A 377 ASN ALA VAL ILE TRP LYS ASN THR THR ASP ASN ASN TYR SEQRES 26 A 377 CYS THR TYR SER SER GLY TYR GLY LYS MET VAL SER MET SEQRES 27 A 377 ASP GLY PHE GLU GLY VAL SER THR TYR ILE LEU ARG GLU SEQRES 28 A 377 ASN ASN SER SER GLN GLU LYS TYR TYR ARG GLN PHE VAL SEQRES 29 A 377 GLU TRP TYR SER ALA ALA ASP TRP ASP SER VAL ASP TRP SEQRES 1 C 5 ACE VAL LEU THR CKC SEQRES 1 B 377 GLY GLU GLU ASP LYS THR ASN TYR GLY SER ARG THR VAL SEQRES 2 B 377 LEU VAL TYR ILE ALA GLY ASP ASN SER LEU SER ARG PHE SEQRES 3 B 377 ALA SER GLU ASP LEU ASN GLU MET ILE GLU GLY MET GLN SEQRES 4 B 377 SER VAL ASP ASP ASN HIS ASN ASN LEU LEU VAL TYR MET SEQRES 5 B 377 ASP LYS GLY SER ASN PRO LYS LEU ILE ARG LEU ARG LYS SEQRES 6 B 377 ASP LYS ASP VAL VAL VAL GLN ASP VAL ILE ALA THR TYR SEQRES 7 B 377 ASP ALA GLN ASN SER VAL ASP VAL ASP VAL MET LYS ASN SEQRES 8 B 377 VAL PHE THR THR ALA PHE SER HIS TYR PRO ALA ASP SER SEQRES 9 B 377 TYR GLY VAL VAL PHE TRP SER HIS GLY ASP GLY TRP LEU SEQRES 10 B 377 PRO TYR ASN ASN PRO SER THR ARG TRP TRP GLY GLN ASP SEQRES 11 B 377 THR GLY ASN GLY ASP ASN ARG MET ASN ILE PRO ASP LEU SEQRES 12 B 377 ASN GLU ALA LEU SER VAL ALA PRO HIS PHE ASP PHE ILE SEQRES 13 B 377 LEU PHE ASP ALA CYS TYR MET GLN SER VAL GLU VAL VAL SEQRES 14 B 377 TYR GLN LEU ARG ASN ARG ALA ASP TYR PHE ILE GLY SER SEQRES 15 B 377 PRO THR GLU ILE PRO GLY PRO GLY ALA PRO TYR GLU VAL SEQRES 16 B 377 VAL VAL PRO ALA LEU PHE ALA VAL ASN SER PRO ALA VAL SEQRES 17 B 377 SER ILE ALA GLU ASN TYR TYR SER VAL TYR ALA LYS LYS SEQRES 18 B 377 TYR ASN SER THR GLY ALA GLY ILE SER ASN GLU ASN TRP SEQRES 19 B 377 THR GLY GLY VAL SER ILE SER VAL ILE LYS SER SER GLU SEQRES 20 B 377 LEU SER ALA LEU ALA ALA ALA THR ARG ASP VAL LEU GLN SEQRES 21 B 377 THR ALA VAL SER MET GLN GLN SER HIS ASN ILE ASP ILE SEQRES 22 B 377 SER SER ILE LEU CYS TYR ASP PRO LEU ARG GLU ASN ASN SEQRES 23 B 377 TYR HIS ASP LEU MET GLY LEU MET GLN SER ILE GLN GLY SEQRES 24 B 377 ASN SER GLN ALA PHE ASN HIS TYR LYS GLU MET TYR LYS SEQRES 25 B 377 ASN ALA VAL ILE TRP LYS ASN THR THR ASP ASN ASN TYR SEQRES 26 B 377 CYS THR TYR SER SER GLY TYR GLY LYS MET VAL SER MET SEQRES 27 B 377 ASP GLY PHE GLU GLY VAL SER THR TYR ILE LEU ARG GLU SEQRES 28 B 377 ASN ASN SER SER GLN GLU LYS TYR TYR ARG GLN PHE VAL SEQRES 29 B 377 GLU TRP TYR SER ALA ALA ASP TRP ASP SER VAL ASP TRP SEQRES 1 D 5 ACE VAL LEU THR CKC HET ACE C 401 3 HET CKC C 405 10 HET ACE D 401 3 HET CKC D 405 10 HETNAM ACE ACETYL GROUP HETNAM CKC (3S)-3,7-DIAMINOHEPTAN-2-ONE FORMUL 2 ACE 2(C2 H4 O) FORMUL 2 CKC 2(C7 H16 N2 O) FORMUL 5 HOH *347(H2 O) HELIX 1 AA1 ASN A 43 ARG A 47 5 5 HELIX 2 AA2 PHE A 48 MET A 60 1 13 HELIX 3 AA3 GLN A 61 VAL A 63 5 3 HELIX 4 AA4 ASP A 107 TYR A 122 1 16 HELIX 5 AA5 ASN A 161 LEU A 169 1 9 HELIX 6 AA6 SER A 170 ALA A 172 5 3 HELIX 7 AA7 SER A 187 LEU A 194 1 8 HELIX 8 AA8 PRO A 214 PHE A 223 1 10 HELIX 9 AA9 SER A 227 TYR A 244 1 18 HELIX 10 AB1 GLU A 269 GLN A 282 1 14 HELIX 11 AB2 LEU A 312 GLN A 320 1 9 HELIX 12 AB3 ASN A 322 ALA A 336 1 15 HELIX 13 AB4 SER A 376 VAL A 386 1 11 HELIX 14 AB5 VAL A 386 ALA A 392 1 7 HELIX 15 AB6 LEU B 45 MET B 60 1 16 HELIX 16 AB7 GLN B 61 VAL B 63 5 3 HELIX 17 AB8 ASP B 107 TYR B 122 1 16 HELIX 18 AB9 ASN B 161 SER B 170 1 10 HELIX 19 AC1 SER B 187 LEU B 194 1 8 HELIX 20 AC2 PRO B 214 PHE B 223 1 10 HELIX 21 AC3 SER B 227 TYR B 244 1 18 HELIX 22 AC4 GLU B 269 GLN B 282 1 14 HELIX 23 AC5 ASP B 294 ILE B 298 5 5 HELIX 24 AC6 LEU B 312 GLN B 320 1 9 HELIX 25 AC7 ASN B 322 ALA B 336 1 15 HELIX 26 AC8 SER B 376 VAL B 386 1 11 HELIX 27 AC9 GLU B 387 ALA B 392 1 6 HELIX 28 AD1 ASP B 393 VAL B 397 5 5 SHEET 1 AA1 9 VAL A 92 THR A 99 0 SHEET 2 AA1 9 LYS A 81 LYS A 87 -1 N ARG A 86 O VAL A 93 SHEET 3 AA1 9 ASN A 68 ASP A 75 -1 N VAL A 72 O ILE A 83 SHEET 4 AA1 9 GLY A 31 ALA A 40 1 N VAL A 37 O LEU A 71 SHEET 5 AA1 9 ALA A 124 TRP A 132 1 O VAL A 130 N TYR A 38 SHEET 6 AA1 9 PHE A 177 ASP A 181 1 O LEU A 179 N VAL A 129 SHEET 7 AA1 9 TYR A 200 GLY A 203 1 O ILE A 202 N ILE A 178 SHEET 8 AA1 9 SER A 261 LYS A 266 -1 O ILE A 265 N PHE A 201 SHEET 9 AA1 9 VAL A 337 THR A 342 -1 O ASN A 341 N ILE A 262 SHEET 1 AA2 2 TRP A 149 ASP A 152 0 SHEET 2 AA2 2 ASN A 158 MET A 160 -1 O MET A 160 N TRP A 149 SHEET 1 AA3 2 HIS A 310 ASP A 311 0 SHEET 2 AA3 2 SER A 367 THR A 368 -1 O THR A 368 N HIS A 310 SHEET 1 AA4 2 ASN A 345 THR A 349 0 SHEET 2 AA4 2 GLY A 355 SER A 359 -1 O VAL A 358 N ASN A 346 SHEET 1 AA5 9 VAL B 92 THR B 99 0 SHEET 2 AA5 9 LYS B 81 LYS B 87 -1 N ARG B 86 O VAL B 93 SHEET 3 AA5 9 ASN B 68 ASP B 75 -1 N VAL B 72 O ILE B 83 SHEET 4 AA5 9 ARG B 33 ALA B 40 1 N VAL B 37 O LEU B 71 SHEET 5 AA5 9 SER B 126 TRP B 132 1 O VAL B 130 N TYR B 38 SHEET 6 AA5 9 PHE B 175 ASP B 181 1 O ASP B 176 N TYR B 127 SHEET 7 AA5 9 ALA B 198 GLY B 203 1 O ILE B 202 N PHE B 180 SHEET 8 AA5 9 SER B 261 LYS B 266 -1 O ILE B 265 N PHE B 201 SHEET 9 AA5 9 VAL B 337 THR B 342 -1 O ASN B 341 N ILE B 262 SHEET 1 AA6 2 TRP B 149 ASP B 152 0 SHEET 2 AA6 2 ASN B 158 MET B 160 -1 O MET B 160 N TRP B 149 SHEET 1 AA7 2 HIS B 310 ASP B 311 0 SHEET 2 AA7 2 SER B 367 THR B 368 -1 O THR B 368 N HIS B 310 SHEET 1 AA8 2 ASN B 345 THR B 349 0 SHEET 2 AA8 2 GLY B 355 SER B 359 -1 O VAL B 358 N ASN B 346 LINK SG CYS A 183 CAK CKC C 405 1555 1555 1.87 LINK C ACE C 401 N VAL C 402 1555 1555 1.34 LINK C THR C 404 N CKC C 405 1555 1555 1.33 LINK SG CYS B 183 CAK CKC D 405 1555 1555 1.81 LINK C ACE D 401 N VAL D 402 1555 1555 1.31 LINK C THR D 404 N CKC D 405 1555 1555 1.33 CRYST1 61.961 98.964 68.334 90.00 89.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016139 0.000000 -0.000029 0.00000 SCALE2 0.000000 0.010105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014634 0.00000