HEADER IMMUNE SYSTEM 04-DEC-18 6N9T TITLE STRUCTURE OF A PEPTIDE-BASED PHOTO-AFFINITY CROSS-LINKER WITH TITLE 2 HERCEPTIN FC COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G1 FC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 249-472; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHOTO-AFFINITY PEPTIDE; COMPND 8 CHAIN: E, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS CROSSLINKING, ANTIBODY, PHOTO-REACTIVE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.SADOWSKY,M.ULTSCH,N.VANCE,W.WANG REVDAT 3 29-JUL-20 6N9T 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-MAY-19 6N9T 1 JRNL REVDAT 1 16-JAN-19 6N9T 0 JRNL AUTH N.VANCE,N.ZACHARIAS,M.ULTSCH,G.LI,A.FOURIE,P.LIU, JRNL AUTH 2 J.LAFRANCE-VANASSE,J.A.ERNST,W.SANDOVAL,K.R.KOZAK, JRNL AUTH 3 G.PHILLIPS,W.WANG,J.SADOWSKY JRNL TITL DEVELOPMENT, OPTIMIZATION, AND STRUCTURAL CHARACTERIZATION JRNL TITL 2 OF AN EFFICIENT PEPTIDE-BASED PHOTOAFFINITY CROSS-LINKING JRNL TITL 3 REACTION FOR GENERATION OF HOMOGENEOUS CONJUGATES FROM JRNL TITL 4 WILD-TYPE ANTIBODIES. JRNL REF BIOCONJUG. CHEM. V. 30 148 2019 JRNL REFN ISSN 1520-4812 JRNL PMID 30566343 JRNL DOI 10.1021/ACS.BIOCONJCHEM.8B00809 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12-2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 31910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2303 - 5.8931 0.98 2563 117 0.2040 0.2133 REMARK 3 2 5.8931 - 4.6792 0.97 2496 149 0.1904 0.1896 REMARK 3 3 4.6792 - 4.0882 0.98 2543 134 0.1971 0.2052 REMARK 3 4 4.0882 - 3.7146 0.99 2553 152 0.2206 0.2435 REMARK 3 5 3.7146 - 3.4485 0.97 2478 167 0.2183 0.2677 REMARK 3 6 3.4485 - 3.2452 0.97 2500 140 0.2290 0.2868 REMARK 3 7 3.2452 - 3.0827 0.97 2506 131 0.2550 0.3265 REMARK 3 8 3.0827 - 2.9486 0.97 2522 127 0.2650 0.3365 REMARK 3 9 2.9486 - 2.8351 0.98 2510 155 0.2691 0.3463 REMARK 3 10 2.8351 - 2.7373 0.98 2557 118 0.2720 0.3681 REMARK 3 11 2.7373 - 2.6517 0.97 2515 119 0.3089 0.4680 REMARK 3 12 2.6517 - 2.5759 0.97 2517 141 0.3412 0.4290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3851 REMARK 3 ANGLE : 0.585 5234 REMARK 3 CHIRALITY : 0.042 596 REMARK 3 PLANARITY : 0.004 643 REMARK 3 DIHEDRAL : 16.054 2313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 237:340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1958 -4.3651 125.1856 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.4626 REMARK 3 T33: 0.4539 T12: -0.0365 REMARK 3 T13: 0.0030 T23: 0.0821 REMARK 3 L TENSOR REMARK 3 L11: 1.6354 L22: 1.8121 REMARK 3 L33: 2.1031 L12: 0.3815 REMARK 3 L13: 0.1374 L23: -0.1676 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: 0.2433 S13: 0.1127 REMARK 3 S21: 0.0130 S22: 0.0943 S23: -0.0375 REMARK 3 S31: -0.0901 S32: 0.3284 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 341:441 ) OR ( CHAIN E AND RESID REMARK 3 1:13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8373 4.4239 155.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.4474 T22: 0.3718 REMARK 3 T33: 0.3809 T12: -0.0436 REMARK 3 T13: 0.0500 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.6473 L22: 2.0004 REMARK 3 L33: 1.3362 L12: 0.2163 REMARK 3 L13: 0.3503 L23: 0.3871 REMARK 3 S TENSOR REMARK 3 S11: 0.1263 S12: -0.1404 S13: -0.0672 REMARK 3 S21: 0.4711 S22: -0.2825 S23: 0.3139 REMARK 3 S31: 0.1470 S32: -0.1499 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 237:340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6924 28.6562 125.2701 REMARK 3 T TENSOR REMARK 3 T11: 0.3491 T22: 0.4277 REMARK 3 T33: 0.3611 T12: -0.0455 REMARK 3 T13: -0.0106 T23: -0.0920 REMARK 3 L TENSOR REMARK 3 L11: 1.4930 L22: 1.2549 REMARK 3 L33: 1.9834 L12: 0.3127 REMARK 3 L13: -0.2306 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.1980 S13: -0.0229 REMARK 3 S21: -0.0704 S22: 0.0633 S23: -0.0249 REMARK 3 S31: 0.0018 S32: -0.3044 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 341:441 ) OR ( CHAIN F AND RESID REMARK 3 1:13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0011 19.9017 155.5278 REMARK 3 T TENSOR REMARK 3 T11: 0.4412 T22: 0.4256 REMARK 3 T33: 0.3775 T12: -0.0410 REMARK 3 T13: -0.0333 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.3674 L22: 2.6631 REMARK 3 L33: 1.4263 L12: 1.4478 REMARK 3 L13: -0.2304 L23: -0.1462 REMARK 3 S TENSOR REMARK 3 S11: 0.2537 S12: -0.3405 S13: 0.0016 REMARK 3 S21: 0.5595 S22: -0.3670 S23: -0.3622 REMARK 3 S31: -0.1057 S32: 0.1568 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 601:677 ) OR ( CHAIN B AND RESID REMARK 3 601:689 ) OR ( CHAIN E AND RESID 101:101 ) OR ( REMARK 3 CHAIN F AND RESID 101:103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6461 13.2429 135.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.2427 REMARK 3 T33: 0.2464 T12: 0.0035 REMARK 3 T13: 0.0121 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0124 L22: 0.4853 REMARK 3 L33: 0.2119 L12: 0.0632 REMARK 3 L13: 0.0162 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: -0.0303 S13: -0.0150 REMARK 3 S21: 0.0227 S22: -0.0313 S23: -0.0202 REMARK 3 S31: -0.0191 S32: -0.0705 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6N9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.576 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE PH=5.6, 12%(W/V) REMARK 280 PEG 1000, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 SER B 444 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 NAG D 1 O5 FUC D 7 1.65 REMARK 500 O6 NAG C 1 O5 FUL C 7 1.78 REMARK 500 ND2 ASN B 297 O5 NAG D 1 2.09 REMARK 500 O6 BMA D 3 C2 MAN D 4 2.10 REMARK 500 O4 NAG D 2 O5 BMA D 3 2.14 REMARK 500 O4 NAG C 2 O5 BMA C 3 2.17 REMARK 500 O HOH B 615 O HOH B 679 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 298 9.32 81.81 REMARK 500 MET A 358 1.27 -68.50 REMARK 500 ASN A 384 49.11 34.96 REMARK 500 LEU E 6 15.90 56.42 REMARK 500 ASN B 325 142.93 -173.31 REMARK 500 SER B 442 -154.60 -164.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 677 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 689 DISTANCE = 8.33 ANGSTROMS DBREF 6N9T A 223 446 UNP Q6MZV7 Q6MZV7_HUMAN 249 472 DBREF 6N9T E 1 13 PDB 6N9T 6N9T 1 13 DBREF 6N9T B 223 446 UNP Q6MZV7 Q6MZV7_HUMAN 249 472 DBREF 6N9T F 1 13 PDB 6N9T 6N9T 1 13 SEQRES 1 A 224 THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU SEQRES 2 A 224 GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS SEQRES 3 A 224 ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS SEQRES 4 A 224 VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS SEQRES 5 A 224 PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA SEQRES 6 A 224 LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR SEQRES 7 A 224 ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP SEQRES 8 A 224 LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS SEQRES 9 A 224 ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA SEQRES 10 A 224 LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO SEQRES 11 A 224 PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU SEQRES 12 A 224 THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA SEQRES 13 A 224 VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR SEQRES 14 A 224 LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE SEQRES 15 A 224 PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP SEQRES 16 A 224 GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU SEQRES 17 A 224 ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 18 A 224 SER PRO GLY SEQRES 1 E 13 ASP CYS ALA TRP HIS LEU GLY GLU LEU PBF TRP CYS THR SEQRES 1 B 224 THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU SEQRES 2 B 224 GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS SEQRES 3 B 224 ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS SEQRES 4 B 224 VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS SEQRES 5 B 224 PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA SEQRES 6 B 224 LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR SEQRES 7 B 224 ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP SEQRES 8 B 224 LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS SEQRES 9 B 224 ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA SEQRES 10 B 224 LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO SEQRES 11 B 224 PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU SEQRES 12 B 224 THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA SEQRES 13 B 224 VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR SEQRES 14 B 224 LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE SEQRES 15 B 224 PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP SEQRES 16 B 224 GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU SEQRES 17 B 224 ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 18 B 224 SER PRO GLY SEQRES 1 F 13 ASP CYS ALA TRP HIS LEU GLY GLU LEU PBF TRP CYS THR HET PBF E 10 19 HET PBF F 10 19 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET FUL C 7 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET FUC D 7 10 HETNAM PBF PARA-(BENZOYL)-PHENYLALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 PBF 2(C16 H15 N O3) FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 5 FUL C6 H12 O5 FORMUL 6 FUC C6 H12 O5 FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 MET A 358 5 5 HELIX 4 AA4 LYS A 414 GLY A 420 1 7 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 LYS B 360 5 7 HELIX 9 AA9 LYS B 414 GLY B 420 1 7 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 320 N TYR A 278 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 TYR A 436 LEU A 441 -1 O LEU A 441 N PHE A 423 SHEET 1 AA7 2 CYS E 2 HIS E 5 0 SHEET 2 AA7 2 GLU E 8 CYS E 12 -1 O GLU E 8 N HIS E 5 SHEET 1 AA8 4 SER B 239 PHE B 243 0 SHEET 2 AA8 4 GLU B 258 SER B 267 -1 O THR B 260 N PHE B 243 SHEET 3 AA8 4 THR B 299 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA8 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA9 4 SER B 239 PHE B 243 0 SHEET 2 AA9 4 GLU B 258 SER B 267 -1 O THR B 260 N PHE B 243 SHEET 3 AA9 4 THR B 299 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA9 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 AB1 4 VAL B 282 VAL B 284 0 SHEET 2 AB1 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AB1 4 TYR B 319 SER B 324 -1 O LYS B 322 N ASN B 276 SHEET 4 AB1 4 ILE B 332 ILE B 336 -1 O ILE B 332 N VAL B 323 SHEET 1 AB2 4 GLN B 347 LEU B 351 0 SHEET 2 AB2 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB2 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB2 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB3 4 GLN B 347 LEU B 351 0 SHEET 2 AB3 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB3 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB3 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB4 4 GLN B 386 GLU B 388 0 SHEET 2 AB4 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB4 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB4 4 TYR B 436 LEU B 441 -1 O LYS B 439 N CYS B 425 SHEET 1 AB5 2 CYS F 2 HIS F 5 0 SHEET 2 AB5 2 GLU F 8 CYS F 12 -1 O TRP F 11 N ALA F 3 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.06 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.05 SSBOND 3 CYS E 2 CYS E 12 1555 1555 2.08 SSBOND 4 CYS B 261 CYS B 321 1555 1555 2.06 SSBOND 5 CYS B 367 CYS B 425 1555 1555 2.05 SSBOND 6 CYS F 2 CYS F 12 1555 1555 2.06 LINK CE MET A 252 CN1 PBF E 10 1555 1555 1.56 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.43 LINK C LEU E 9 N PBF E 10 1555 1555 1.33 LINK C PBF E 10 N TRP E 11 1555 1555 1.33 LINK CE MET B 252 CN1 PBF F 10 1555 1555 1.56 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.44 LINK C LEU F 9 N PBF F 10 1555 1555 1.33 LINK C PBF F 10 N TRP F 11 1555 1555 1.33 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.48 LINK O6 NAG C 1 C1 FUL C 7 1555 1555 1.47 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.47 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.48 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O6 NAG D 1 C1 FUC D 7 1555 1555 1.48 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.47 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.47 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.49 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.48 CISPEP 1 TYR A 373 PRO A 374 0 -1.83 CISPEP 2 TYR B 373 PRO B 374 0 -4.57 CRYST1 66.112 60.850 68.167 90.00 103.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015126 0.000000 0.003529 0.00000 SCALE2 0.000000 0.016434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015064 0.00000