HEADER TRANSFERASE 09-DEC-18 6NBR TITLE CRYSTAL STRUCTURE OF PIPER METHYSTICUM KAVALACTONE REDUCTASE 1 IN TITLE 2 COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KAVALACTONE REDUCTASE 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PIPER METHYSTICUM; SOURCE 3 ORGANISM_TAXID: 130404; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS8-4 KEYWDS PHENYLPROPANOID PATHWAY, KAVALACTONE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.PLUSKAL,J.K.WENG REVDAT 5 03-APR-24 6NBR 1 REMARK REVDAT 4 13-MAR-24 6NBR 1 REMARK REVDAT 3 21-AUG-19 6NBR 1 JRNL REVDAT 2 07-AUG-19 6NBR 1 JRNL REVDAT 1 19-JUN-19 6NBR 0 JRNL AUTH T.PLUSKAL,M.P.TORRENS-SPENCE,T.R.FALLON,A.DE ABREU,C.H.SHI, JRNL AUTH 2 J.K.WENG JRNL TITL THE BIOSYNTHETIC ORIGIN OF PSYCHOACTIVE KAVALACTONES IN JRNL TITL 2 KAVA. JRNL REF NAT.PLANTS V. 5 867 2019 JRNL REFN ESSN 2055-0278 JRNL PMID 31332312 JRNL DOI 10.1038/S41477-019-0474-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 101.00 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 32903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.470 REMARK 3 FREE R VALUE TEST SET COUNT : 3444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4200 - 7.5600 0.90 1693 180 0.1975 0.2340 REMARK 3 2 7.5600 - 6.0200 0.90 1606 170 0.1966 0.2686 REMARK 3 3 6.0200 - 5.2600 0.90 1520 178 0.2136 0.2340 REMARK 3 4 5.2600 - 4.7800 0.90 1584 183 0.1965 0.2544 REMARK 3 5 4.7800 - 4.4400 0.90 1539 157 0.1970 0.2591 REMARK 3 6 4.4400 - 4.1800 0.90 1520 160 0.2082 0.2354 REMARK 3 7 4.1800 - 3.9700 0.88 1492 187 0.2174 0.2544 REMARK 3 8 3.9700 - 3.8000 0.86 1474 160 0.2294 0.2678 REMARK 3 9 3.8000 - 3.6500 0.86 1472 145 0.2503 0.2845 REMARK 3 10 3.6500 - 3.5300 0.86 1413 151 0.2508 0.2852 REMARK 3 11 3.5300 - 3.4200 0.82 1406 198 0.2661 0.3208 REMARK 3 12 3.4200 - 3.3200 0.87 1419 150 0.2717 0.2879 REMARK 3 13 3.3200 - 3.2300 0.85 1456 154 0.2913 0.3403 REMARK 3 14 3.2300 - 3.1500 0.85 1390 170 0.3078 0.3017 REMARK 3 15 3.1500 - 3.0800 0.84 1411 172 0.3042 0.3417 REMARK 3 16 3.0800 - 3.0200 0.86 1428 170 0.3021 0.2857 REMARK 3 17 3.0200 - 2.9600 0.85 1453 143 0.3045 0.3519 REMARK 3 18 2.9600 - 2.9000 0.85 1407 164 0.3274 0.3689 REMARK 3 19 2.9000 - 2.8500 0.86 1446 157 0.3198 0.3738 REMARK 3 20 2.8500 - 2.8000 0.84 1415 174 0.3218 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 10285 REMARK 3 ANGLE : 0.790 13976 REMARK 3 CHIRALITY : 0.048 1602 REMARK 3 PLANARITY : 0.004 1728 REMARK 3 DIHEDRAL : 22.795 3740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 83.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PHYRE2 MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4AC 0.35 M, HEPES 0.1M, PEG 3350 25% REMARK 280 W/V, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.61000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.87300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.61950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 166.87300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.61950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 ILE A 284 REMARK 465 LYS A 285 REMARK 465 ASN A 325 REMARK 465 GLU A 326 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ILE B 284 REMARK 465 LYS B 285 REMARK 465 ASN B 325 REMARK 465 GLU B 326 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 THR C 3 REMARK 465 GLU C 4 REMARK 465 ARG C 5 REMARK 465 LYS C 6 REMARK 465 GLU C 183 REMARK 465 GLY C 184 REMARK 465 ILE C 284 REMARK 465 LYS C 285 REMARK 465 ASN C 325 REMARK 465 GLU C 326 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 THR D 3 REMARK 465 GLU D 4 REMARK 465 ARG D 5 REMARK 465 LYS D 6 REMARK 465 GLU D 183 REMARK 465 GLY D 184 REMARK 465 ILE D 284 REMARK 465 LYS D 285 REMARK 465 ASN D 325 REMARK 465 GLU D 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG D 38 O3X NAP D 401 1.30 REMARK 500 OG SER B 221 OD1 ASN B 280 2.12 REMARK 500 O GLN A 272 OH TYR A 277 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG B 156 OE1 GLU D 269 1565 2.09 REMARK 500 NZ LYS A 182 OD1 ASP C 308 1565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 37.93 -80.29 REMARK 500 SER A 127 -143.91 -103.84 REMARK 500 PRO A 139 -177.98 -63.77 REMARK 500 ASP A 145 -158.62 -142.74 REMARK 500 ASP A 181 56.56 -96.85 REMARK 500 LYS A 182 -157.31 -115.40 REMARK 500 SER A 193 -155.67 -94.12 REMARK 500 ASP A 218 -158.97 -140.03 REMARK 500 GLU A 247 50.29 -69.06 REMARK 500 SER A 249 139.86 -173.00 REMARK 500 LYS A 279 30.99 -140.88 REMARK 500 SER A 287 -81.02 -97.09 REMARK 500 TRP A 288 -25.49 -27.00 REMARK 500 THR A 289 3.89 -45.44 REMARK 500 LYS B 92 45.80 -93.70 REMARK 500 SER B 127 -141.94 -99.07 REMARK 500 VAL B 132 -41.15 -132.79 REMARK 500 VAL B 134 69.83 -69.05 REMARK 500 ASP B 145 -157.76 -140.22 REMARK 500 LEU B 162 13.01 81.38 REMARK 500 TYR B 179 37.56 -75.51 REMARK 500 SER B 193 -158.75 -92.48 REMARK 500 LYS B 279 29.42 -141.38 REMARK 500 THR B 289 29.54 -77.43 REMARK 500 MET B 290 47.06 -148.80 REMARK 500 LYS C 92 38.03 -81.93 REMARK 500 SER C 127 -139.76 -101.27 REMARK 500 VAL C 132 -41.53 -133.24 REMARK 500 VAL C 134 76.83 -69.03 REMARK 500 ASP C 145 -154.88 -136.39 REMARK 500 LEU C 162 15.96 85.33 REMARK 500 ASP C 181 57.05 -90.16 REMARK 500 SER C 193 -151.27 -80.18 REMARK 500 ASP C 218 -158.00 -152.07 REMARK 500 GLU C 247 43.31 -105.56 REMARK 500 LYS C 279 27.69 -144.20 REMARK 500 SER C 287 -0.88 -149.09 REMARK 500 LYS D 92 40.38 -81.19 REMARK 500 SER D 127 -139.09 -103.43 REMARK 500 VAL D 132 -41.39 -136.35 REMARK 500 VAL D 134 82.51 -69.32 REMARK 500 ASP D 145 -159.00 -128.78 REMARK 500 LEU D 162 17.65 81.37 REMARK 500 ASP D 181 56.25 -91.97 REMARK 500 SER D 193 -156.13 -101.85 REMARK 500 ASP D 218 -154.73 -141.89 REMARK 500 GLU D 247 50.58 29.54 REMARK 500 SER D 287 6.00 -153.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CQB RELATED DB: PDB REMARK 900 RELATED ID: 6OP5 RELATED DB: PDB DBREF 6NBR A 1 326 PDB 6NBR 6NBR 1 326 DBREF 6NBR B 1 326 PDB 6NBR 6NBR 1 326 DBREF 6NBR C 1 326 PDB 6NBR 6NBR 1 326 DBREF 6NBR D 1 326 PDB 6NBR 6NBR 1 326 SEQRES 1 A 326 MET GLU THR GLU ARG LYS SER ARG ILE CYS VAL THR GLY SEQRES 2 A 326 ALA GLY GLY PHE VAL ALA SER TRP VAL VAL LYS LEU PHE SEQRES 3 A 326 LEU SER LYS GLY TYR LEU VAL HIS GLY THR VAL ARG ASP SEQRES 4 A 326 LEU GLY GLU GLU LYS THR ALA HIS LEU ARG LYS LEU GLU SEQRES 5 A 326 GLY ALA TYR HIS ASN LEU GLN LEU PHE LYS ALA ASP LEU SEQRES 6 A 326 LEU ASP TYR GLU SER LEU LEU GLY ALA ILE THR GLY CYS SEQRES 7 A 326 ASP GLY VAL LEU HIS VAL ALA THR PRO VAL PRO SER SER SEQRES 8 A 326 LYS THR ALA TYR SER GLY THR GLU LEU VAL LYS THR ALA SEQRES 9 A 326 VAL ASN GLY THR LEU ASN VAL LEU ARG ALA CYS THR GLU SEQRES 10 A 326 ALA LYS VAL LYS LYS VAL ILE TYR VAL SER SER THR ALA SEQRES 11 A 326 ALA VAL LEU VAL ASN PRO ASN LEU PRO LYS ASP LYS ILE SEQRES 12 A 326 PRO ASP GLU ASP CYS TRP THR ASP GLU GLU TYR CYS ARG SEQRES 13 A 326 THR THR PRO PHE PHE LEU ASN TRP TYR CYS ILE ALA LYS SEQRES 14 A 326 THR ALA ALA GLU LYS ASN ALA LEU GLU TYR GLY ASP LYS SEQRES 15 A 326 GLU GLY ILE ASN VAL ILE SER ILE CYS PRO SER TYR ILE SEQRES 16 A 326 PHE GLY PRO MET LEU GLN PRO THR ILE ASN SER SER ASN SEQRES 17 A 326 LEU GLU LEU LEU ARG LEU MET LYS GLY ASP ASP GLU SER SEQRES 18 A 326 ILE GLU ASN LYS PHE LEU LEU MET VAL ASP VAL ARG ASP SEQRES 19 A 326 VAL ALA GLU ALA ILE LEU LEU LEU TYR GLU LYS GLN GLU SEQRES 20 A 326 THR SER GLY ARG TYR ILE SER SER PRO HIS GLY MET ARG SEQRES 21 A 326 GLN SER ASN LEU VAL GLU LYS LEU GLU SER LEU GLN PRO SEQRES 22 A 326 GLY TYR ASN TYR HIS LYS ASN PHE VAL ASP ILE LYS PRO SEQRES 23 A 326 SER TRP THR MET ILE SER SER GLU LYS LEU LYS LYS LEU SEQRES 24 A 326 GLY TRP LYS PRO ARG PRO LEU GLU ASP THR ILE SER GLU SEQRES 25 A 326 THR VAL LEU CYS PHE GLU GLU HIS GLY LEU LEU GLU ASN SEQRES 26 A 326 GLU SEQRES 1 B 326 MET GLU THR GLU ARG LYS SER ARG ILE CYS VAL THR GLY SEQRES 2 B 326 ALA GLY GLY PHE VAL ALA SER TRP VAL VAL LYS LEU PHE SEQRES 3 B 326 LEU SER LYS GLY TYR LEU VAL HIS GLY THR VAL ARG ASP SEQRES 4 B 326 LEU GLY GLU GLU LYS THR ALA HIS LEU ARG LYS LEU GLU SEQRES 5 B 326 GLY ALA TYR HIS ASN LEU GLN LEU PHE LYS ALA ASP LEU SEQRES 6 B 326 LEU ASP TYR GLU SER LEU LEU GLY ALA ILE THR GLY CYS SEQRES 7 B 326 ASP GLY VAL LEU HIS VAL ALA THR PRO VAL PRO SER SER SEQRES 8 B 326 LYS THR ALA TYR SER GLY THR GLU LEU VAL LYS THR ALA SEQRES 9 B 326 VAL ASN GLY THR LEU ASN VAL LEU ARG ALA CYS THR GLU SEQRES 10 B 326 ALA LYS VAL LYS LYS VAL ILE TYR VAL SER SER THR ALA SEQRES 11 B 326 ALA VAL LEU VAL ASN PRO ASN LEU PRO LYS ASP LYS ILE SEQRES 12 B 326 PRO ASP GLU ASP CYS TRP THR ASP GLU GLU TYR CYS ARG SEQRES 13 B 326 THR THR PRO PHE PHE LEU ASN TRP TYR CYS ILE ALA LYS SEQRES 14 B 326 THR ALA ALA GLU LYS ASN ALA LEU GLU TYR GLY ASP LYS SEQRES 15 B 326 GLU GLY ILE ASN VAL ILE SER ILE CYS PRO SER TYR ILE SEQRES 16 B 326 PHE GLY PRO MET LEU GLN PRO THR ILE ASN SER SER ASN SEQRES 17 B 326 LEU GLU LEU LEU ARG LEU MET LYS GLY ASP ASP GLU SER SEQRES 18 B 326 ILE GLU ASN LYS PHE LEU LEU MET VAL ASP VAL ARG ASP SEQRES 19 B 326 VAL ALA GLU ALA ILE LEU LEU LEU TYR GLU LYS GLN GLU SEQRES 20 B 326 THR SER GLY ARG TYR ILE SER SER PRO HIS GLY MET ARG SEQRES 21 B 326 GLN SER ASN LEU VAL GLU LYS LEU GLU SER LEU GLN PRO SEQRES 22 B 326 GLY TYR ASN TYR HIS LYS ASN PHE VAL ASP ILE LYS PRO SEQRES 23 B 326 SER TRP THR MET ILE SER SER GLU LYS LEU LYS LYS LEU SEQRES 24 B 326 GLY TRP LYS PRO ARG PRO LEU GLU ASP THR ILE SER GLU SEQRES 25 B 326 THR VAL LEU CYS PHE GLU GLU HIS GLY LEU LEU GLU ASN SEQRES 26 B 326 GLU SEQRES 1 C 326 MET GLU THR GLU ARG LYS SER ARG ILE CYS VAL THR GLY SEQRES 2 C 326 ALA GLY GLY PHE VAL ALA SER TRP VAL VAL LYS LEU PHE SEQRES 3 C 326 LEU SER LYS GLY TYR LEU VAL HIS GLY THR VAL ARG ASP SEQRES 4 C 326 LEU GLY GLU GLU LYS THR ALA HIS LEU ARG LYS LEU GLU SEQRES 5 C 326 GLY ALA TYR HIS ASN LEU GLN LEU PHE LYS ALA ASP LEU SEQRES 6 C 326 LEU ASP TYR GLU SER LEU LEU GLY ALA ILE THR GLY CYS SEQRES 7 C 326 ASP GLY VAL LEU HIS VAL ALA THR PRO VAL PRO SER SER SEQRES 8 C 326 LYS THR ALA TYR SER GLY THR GLU LEU VAL LYS THR ALA SEQRES 9 C 326 VAL ASN GLY THR LEU ASN VAL LEU ARG ALA CYS THR GLU SEQRES 10 C 326 ALA LYS VAL LYS LYS VAL ILE TYR VAL SER SER THR ALA SEQRES 11 C 326 ALA VAL LEU VAL ASN PRO ASN LEU PRO LYS ASP LYS ILE SEQRES 12 C 326 PRO ASP GLU ASP CYS TRP THR ASP GLU GLU TYR CYS ARG SEQRES 13 C 326 THR THR PRO PHE PHE LEU ASN TRP TYR CYS ILE ALA LYS SEQRES 14 C 326 THR ALA ALA GLU LYS ASN ALA LEU GLU TYR GLY ASP LYS SEQRES 15 C 326 GLU GLY ILE ASN VAL ILE SER ILE CYS PRO SER TYR ILE SEQRES 16 C 326 PHE GLY PRO MET LEU GLN PRO THR ILE ASN SER SER ASN SEQRES 17 C 326 LEU GLU LEU LEU ARG LEU MET LYS GLY ASP ASP GLU SER SEQRES 18 C 326 ILE GLU ASN LYS PHE LEU LEU MET VAL ASP VAL ARG ASP SEQRES 19 C 326 VAL ALA GLU ALA ILE LEU LEU LEU TYR GLU LYS GLN GLU SEQRES 20 C 326 THR SER GLY ARG TYR ILE SER SER PRO HIS GLY MET ARG SEQRES 21 C 326 GLN SER ASN LEU VAL GLU LYS LEU GLU SER LEU GLN PRO SEQRES 22 C 326 GLY TYR ASN TYR HIS LYS ASN PHE VAL ASP ILE LYS PRO SEQRES 23 C 326 SER TRP THR MET ILE SER SER GLU LYS LEU LYS LYS LEU SEQRES 24 C 326 GLY TRP LYS PRO ARG PRO LEU GLU ASP THR ILE SER GLU SEQRES 25 C 326 THR VAL LEU CYS PHE GLU GLU HIS GLY LEU LEU GLU ASN SEQRES 26 C 326 GLU SEQRES 1 D 326 MET GLU THR GLU ARG LYS SER ARG ILE CYS VAL THR GLY SEQRES 2 D 326 ALA GLY GLY PHE VAL ALA SER TRP VAL VAL LYS LEU PHE SEQRES 3 D 326 LEU SER LYS GLY TYR LEU VAL HIS GLY THR VAL ARG ASP SEQRES 4 D 326 LEU GLY GLU GLU LYS THR ALA HIS LEU ARG LYS LEU GLU SEQRES 5 D 326 GLY ALA TYR HIS ASN LEU GLN LEU PHE LYS ALA ASP LEU SEQRES 6 D 326 LEU ASP TYR GLU SER LEU LEU GLY ALA ILE THR GLY CYS SEQRES 7 D 326 ASP GLY VAL LEU HIS VAL ALA THR PRO VAL PRO SER SER SEQRES 8 D 326 LYS THR ALA TYR SER GLY THR GLU LEU VAL LYS THR ALA SEQRES 9 D 326 VAL ASN GLY THR LEU ASN VAL LEU ARG ALA CYS THR GLU SEQRES 10 D 326 ALA LYS VAL LYS LYS VAL ILE TYR VAL SER SER THR ALA SEQRES 11 D 326 ALA VAL LEU VAL ASN PRO ASN LEU PRO LYS ASP LYS ILE SEQRES 12 D 326 PRO ASP GLU ASP CYS TRP THR ASP GLU GLU TYR CYS ARG SEQRES 13 D 326 THR THR PRO PHE PHE LEU ASN TRP TYR CYS ILE ALA LYS SEQRES 14 D 326 THR ALA ALA GLU LYS ASN ALA LEU GLU TYR GLY ASP LYS SEQRES 15 D 326 GLU GLY ILE ASN VAL ILE SER ILE CYS PRO SER TYR ILE SEQRES 16 D 326 PHE GLY PRO MET LEU GLN PRO THR ILE ASN SER SER ASN SEQRES 17 D 326 LEU GLU LEU LEU ARG LEU MET LYS GLY ASP ASP GLU SER SEQRES 18 D 326 ILE GLU ASN LYS PHE LEU LEU MET VAL ASP VAL ARG ASP SEQRES 19 D 326 VAL ALA GLU ALA ILE LEU LEU LEU TYR GLU LYS GLN GLU SEQRES 20 D 326 THR SER GLY ARG TYR ILE SER SER PRO HIS GLY MET ARG SEQRES 21 D 326 GLN SER ASN LEU VAL GLU LYS LEU GLU SER LEU GLN PRO SEQRES 22 D 326 GLY TYR ASN TYR HIS LYS ASN PHE VAL ASP ILE LYS PRO SEQRES 23 D 326 SER TRP THR MET ILE SER SER GLU LYS LEU LYS LYS LEU SEQRES 24 D 326 GLY TRP LYS PRO ARG PRO LEU GLU ASP THR ILE SER GLU SEQRES 25 D 326 THR VAL LEU CYS PHE GLU GLU HIS GLY LEU LEU GLU ASN SEQRES 26 D 326 GLU HET NAP A 401 48 HET NAP B 401 48 HET NAP C 401 48 HET NAP D 401 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 5 NAP 4(C21 H28 N7 O17 P3) FORMUL 9 HOH *49(H2 O) HELIX 1 AA1 GLY A 16 LYS A 29 1 14 HELIX 2 AA2 GLY A 41 LYS A 50 1 10 HELIX 3 AA3 GLY A 53 ASN A 57 1 5 HELIX 4 AA4 ASP A 67 THR A 76 1 10 HELIX 5 AA5 SER A 96 ALA A 118 1 23 HELIX 6 AA6 SER A 128 VAL A 132 5 5 HELIX 7 AA7 ASP A 151 THR A 158 1 8 HELIX 8 AA8 LEU A 162 GLY A 180 1 19 HELIX 9 AA9 ASN A 205 LYS A 216 1 12 HELIX 10 AB1 VAL A 232 LYS A 245 1 14 HELIX 11 AB2 GLN A 261 GLN A 272 1 12 HELIX 12 AB3 SER A 293 LYS A 298 1 6 HELIX 13 AB4 PRO A 305 HIS A 320 1 16 HELIX 14 AB5 GLY B 16 LYS B 29 1 14 HELIX 15 AB6 GLY B 41 LYS B 50 1 10 HELIX 16 AB7 GLY B 53 ASN B 57 1 5 HELIX 17 AB8 ASP B 67 THR B 76 1 10 HELIX 18 AB9 SER B 96 ALA B 118 1 23 HELIX 19 AC1 SER B 128 VAL B 132 5 5 HELIX 20 AC2 ASP B 151 THR B 158 1 8 HELIX 21 AC3 LEU B 162 TYR B 179 1 18 HELIX 22 AC4 ASN B 205 LYS B 216 1 12 HELIX 23 AC5 VAL B 232 LYS B 245 1 14 HELIX 24 AC6 GLN B 261 GLN B 272 1 12 HELIX 25 AC7 SER B 293 LYS B 298 1 6 HELIX 26 AC8 PRO B 305 HIS B 320 1 16 HELIX 27 AC9 GLY C 16 LYS C 29 1 14 HELIX 28 AD1 GLY C 41 LYS C 50 1 10 HELIX 29 AD2 GLY C 53 ASN C 57 1 5 HELIX 30 AD3 ASP C 67 THR C 76 1 10 HELIX 31 AD4 SER C 96 ALA C 118 1 23 HELIX 32 AD5 SER C 128 VAL C 132 5 5 HELIX 33 AD6 ASP C 151 THR C 158 1 8 HELIX 34 AD7 LEU C 162 ASP C 181 1 20 HELIX 35 AD8 ASN C 205 LYS C 216 1 12 HELIX 36 AD9 VAL C 232 LYS C 245 1 14 HELIX 37 AE1 GLN C 261 GLN C 272 1 12 HELIX 38 AE2 SER C 293 LYS C 298 1 6 HELIX 39 AE3 PRO C 305 HIS C 320 1 16 HELIX 40 AE4 GLY D 16 LYS D 29 1 14 HELIX 41 AE5 THR D 45 LYS D 50 1 6 HELIX 42 AE6 GLY D 53 ASN D 57 1 5 HELIX 43 AE7 ASP D 67 THR D 76 1 10 HELIX 44 AE8 SER D 96 ALA D 118 1 23 HELIX 45 AE9 SER D 128 VAL D 132 5 5 HELIX 46 AF1 ASP D 151 THR D 158 1 8 HELIX 47 AF2 LEU D 162 GLY D 180 1 19 HELIX 48 AF3 SER D 206 LYS D 216 1 11 HELIX 49 AF4 VAL D 232 LYS D 245 1 14 HELIX 50 AF5 GLN D 261 GLN D 272 1 12 HELIX 51 AF6 SER D 293 LYS D 298 1 6 HELIX 52 AF7 PRO D 305 HIS D 320 1 16 SHEET 1 AA1 7 LEU A 58 LYS A 62 0 SHEET 2 AA1 7 LEU A 32 VAL A 37 1 N GLY A 35 O PHE A 61 SHEET 3 AA1 7 ARG A 8 VAL A 11 1 N ILE A 9 O LEU A 32 SHEET 4 AA1 7 GLY A 80 HIS A 83 1 O LEU A 82 N CYS A 10 SHEET 5 AA1 7 LYS A 122 VAL A 126 1 O VAL A 126 N HIS A 83 SHEET 6 AA1 7 ASN A 186 PRO A 192 1 O ILE A 188 N VAL A 123 SHEET 7 AA1 7 GLY A 250 SER A 254 1 O TYR A 252 N CYS A 191 SHEET 1 AA2 3 TYR A 194 PHE A 196 0 SHEET 2 AA2 3 PHE A 226 ASP A 231 1 O VAL A 230 N PHE A 196 SHEET 3 AA2 3 HIS A 257 ARG A 260 -1 O MET A 259 N LEU A 227 SHEET 1 AA3 7 LEU B 58 LYS B 62 0 SHEET 2 AA3 7 LEU B 32 VAL B 37 1 N GLY B 35 O PHE B 61 SHEET 3 AA3 7 ARG B 8 VAL B 11 1 N ILE B 9 O LEU B 32 SHEET 4 AA3 7 GLY B 80 LEU B 82 1 O LEU B 82 N CYS B 10 SHEET 5 AA3 7 LYS B 122 VAL B 126 1 O ILE B 124 N VAL B 81 SHEET 6 AA3 7 ASN B 186 PRO B 192 1 O ILE B 188 N VAL B 123 SHEET 7 AA3 7 GLY B 250 SER B 254 1 O TYR B 252 N CYS B 191 SHEET 1 AA4 3 TYR B 194 PHE B 196 0 SHEET 2 AA4 3 PHE B 226 ASP B 231 1 O VAL B 230 N PHE B 196 SHEET 3 AA4 3 HIS B 257 ARG B 260 -1 O MET B 259 N LEU B 227 SHEET 1 AA5 7 LEU C 58 LYS C 62 0 SHEET 2 AA5 7 LEU C 32 VAL C 37 1 N GLY C 35 O PHE C 61 SHEET 3 AA5 7 ARG C 8 VAL C 11 1 N VAL C 11 O THR C 36 SHEET 4 AA5 7 GLY C 80 HIS C 83 1 O GLY C 80 N CYS C 10 SHEET 5 AA5 7 LYS C 122 VAL C 126 1 O VAL C 126 N HIS C 83 SHEET 6 AA5 7 ASN C 186 PRO C 192 1 O ILE C 188 N TYR C 125 SHEET 7 AA5 7 GLY C 250 SER C 254 1 O TYR C 252 N CYS C 191 SHEET 1 AA6 3 TYR C 194 PHE C 196 0 SHEET 2 AA6 3 PHE C 226 ASP C 231 1 O LEU C 228 N TYR C 194 SHEET 3 AA6 3 HIS C 257 ARG C 260 -1 O HIS C 257 N MET C 229 SHEET 1 AA7 7 LEU D 58 LYS D 62 0 SHEET 2 AA7 7 LEU D 32 VAL D 37 1 N GLY D 35 O PHE D 61 SHEET 3 AA7 7 ARG D 8 VAL D 11 1 N VAL D 11 O THR D 36 SHEET 4 AA7 7 GLY D 80 HIS D 83 1 O LEU D 82 N CYS D 10 SHEET 5 AA7 7 LYS D 122 VAL D 126 1 O VAL D 126 N HIS D 83 SHEET 6 AA7 7 ASN D 186 PRO D 192 1 O ASN D 186 N VAL D 123 SHEET 7 AA7 7 ILE D 253 SER D 254 1 O SER D 254 N CYS D 191 SHEET 1 AA8 3 TYR D 194 PHE D 196 0 SHEET 2 AA8 3 PHE D 226 ASP D 231 1 O VAL D 230 N PHE D 196 SHEET 3 AA8 3 HIS D 257 ARG D 260 -1 O MET D 259 N LEU D 227 SITE 1 AC1 22 GLY A 13 GLY A 16 PHE A 17 VAL A 18 SITE 2 AC1 22 ARG A 38 ASP A 64 LEU A 65 VAL A 84 SITE 3 AC1 22 THR A 86 VAL A 88 VAL A 126 SER A 127 SITE 4 AC1 22 SER A 128 TYR A 165 LYS A 169 PRO A 192 SITE 5 AC1 22 SER A 193 ILE A 195 SER A 207 HOH A 501 SITE 6 AC1 22 HOH A 502 HOH A 505 SITE 1 AC2 19 GLY B 13 GLY B 16 PHE B 17 VAL B 18 SITE 2 AC2 19 ARG B 38 ASP B 64 LEU B 65 VAL B 84 SITE 3 AC2 19 THR B 86 VAL B 88 VAL B 126 SER B 127 SITE 4 AC2 19 SER B 128 TYR B 165 LYS B 169 PRO B 192 SITE 5 AC2 19 SER B 193 ILE B 195 SER B 207 SITE 1 AC3 19 GLY C 13 GLY C 16 PHE C 17 VAL C 18 SITE 2 AC3 19 ARG C 38 ASP C 64 LEU C 65 VAL C 84 SITE 3 AC3 19 THR C 86 PRO C 87 VAL C 88 VAL C 126 SITE 4 AC3 19 SER C 127 SER C 128 TYR C 165 LYS C 169 SITE 5 AC3 19 SER C 193 ILE C 195 SER C 207 CRYST1 63.220 63.239 333.746 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002996 0.00000