HEADER TRANSPORT PROTEIN 11-DEC-18 6NC9 TITLE LIPID II FLIPPASE MURJ, OUTWARD-FACING CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID II FLIPPASE MURJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSIPHO AFRICANUS (STRAIN TCF52B); SOURCE 3 ORGANISM_TAXID: 484019; SOURCE 4 STRAIN: TCF52B; SOURCE 5 GENE: MURJ, MVIN, THA_1814; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORTER, FLIPPASE, PEPTIDOGLYCAN, CELL WALL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.C.Y.KUK,S.-Y.LEE REVDAT 4 11-OCT-23 6NC9 1 REMARK REVDAT 3 01-JAN-20 6NC9 1 REMARK REVDAT 2 01-MAY-19 6NC9 1 JRNL REVDAT 1 17-APR-19 6NC9 0 JRNL AUTH A.C.Y.KUK,A.HAO,Z.GUAN,S.Y.LEE JRNL TITL VISUALIZING CONFORMATION TRANSITIONS OF THE LIPID II JRNL TITL 2 FLIPPASE MURJ. JRNL REF NAT COMMUN V. 10 1736 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30988294 JRNL DOI 10.1038/S41467-019-09658-0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 51025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 84.9912 - 4.7171 1.00 3147 173 0.1970 0.2048 REMARK 3 2 4.7171 - 3.7441 1.00 3065 178 0.1838 0.2109 REMARK 3 3 3.7441 - 3.2708 1.00 3079 145 0.1806 0.1952 REMARK 3 4 3.2708 - 2.9717 1.00 3058 159 0.1782 0.1943 REMARK 3 5 2.9717 - 2.7587 1.00 3045 158 0.1608 0.1766 REMARK 3 6 2.7587 - 2.5961 1.00 3026 164 0.1498 0.1606 REMARK 3 7 2.5961 - 2.4660 1.00 3032 170 0.1558 0.1721 REMARK 3 8 2.4660 - 2.3587 1.00 3041 153 0.1518 0.1698 REMARK 3 9 2.3587 - 2.2679 1.00 3007 163 0.1570 0.2109 REMARK 3 10 2.2679 - 2.1896 1.00 3033 154 0.1724 0.2075 REMARK 3 11 2.1896 - 2.1211 0.97 2943 158 0.1873 0.1987 REMARK 3 12 2.1211 - 2.0605 0.88 2673 145 0.1894 0.1999 REMARK 3 13 2.0605 - 2.0063 0.81 2455 129 0.1947 0.2010 REMARK 3 14 2.0063 - 1.9573 0.75 2232 115 0.2021 0.2505 REMARK 3 15 1.9573 - 1.9128 0.70 2115 106 0.2086 0.2422 REMARK 3 16 1.9128 - 1.8721 0.64 1972 104 0.2242 0.2456 REMARK 3 17 1.8721 - 1.8346 0.60 1803 95 0.2470 0.2696 REMARK 3 18 1.8346 - 1.8000 0.58 1744 86 0.2482 0.3016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4165 REMARK 3 ANGLE : 0.656 5570 REMARK 3 CHIRALITY : 0.039 640 REMARK 3 PLANARITY : 0.004 656 REMARK 3 DIHEDRAL : 19.535 1487 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9205 23.1324 27.0655 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.0770 REMARK 3 T33: 0.0945 T12: 0.0552 REMARK 3 T13: -0.0253 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.4839 L22: 0.7501 REMARK 3 L33: 0.7560 L12: 0.0129 REMARK 3 L13: 0.0886 L23: -0.1431 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.3526 S13: 0.0292 REMARK 3 S21: 0.1825 S22: 0.1709 S23: -0.2402 REMARK 3 S31: -0.0810 S32: 0.2187 S33: 0.2168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5300 13.3879 14.7668 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.0284 REMARK 3 T33: 0.1158 T12: 0.0022 REMARK 3 T13: 0.0048 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.0895 L22: 0.7496 REMARK 3 L33: 1.3622 L12: -0.4483 REMARK 3 L13: -0.2743 L23: 0.5256 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: 0.1364 S13: -0.1086 REMARK 3 S21: 0.0784 S22: 0.0112 S23: 0.0129 REMARK 3 S31: 0.1508 S32: -0.1126 S33: -0.0266 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7832 24.3219 11.0680 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1913 REMARK 3 T33: 0.1148 T12: 0.0193 REMARK 3 T13: -0.0026 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5167 L22: 0.7246 REMARK 3 L33: 0.7941 L12: -0.1252 REMARK 3 L13: 0.2676 L23: 0.2684 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: 0.1619 S13: -0.0332 REMARK 3 S21: -0.1488 S22: 0.0424 S23: 0.0440 REMARK 3 S31: 0.0677 S32: -0.1472 S33: 0.0113 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3304 37.7927 18.0394 REMARK 3 T TENSOR REMARK 3 T11: 0.1069 T22: 0.0676 REMARK 3 T33: 0.0607 T12: 0.0715 REMARK 3 T13: -0.0186 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.2486 L22: 1.0570 REMARK 3 L33: 1.6933 L12: 0.4623 REMARK 3 L13: 0.5710 L23: 0.1463 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.2088 S13: 0.1366 REMARK 3 S21: -0.0643 S22: -0.0096 S23: 0.0098 REMARK 3 S31: -0.1824 S32: 0.0298 S33: -0.0153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1868 48.0611 32.4982 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: -0.0970 REMARK 3 T33: 0.1743 T12: 0.0840 REMARK 3 T13: -0.0140 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.4783 L22: 1.9643 REMARK 3 L33: 1.6149 L12: -0.7275 REMARK 3 L13: 0.2274 L23: 0.4286 REMARK 3 S TENSOR REMARK 3 S11: -0.1741 S12: 0.0036 S13: 0.5324 REMARK 3 S21: 0.1272 S22: -0.3807 S23: 0.4309 REMARK 3 S31: -0.4489 S32: -0.4419 S33: -1.5412 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1098 39.4881 39.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.0236 REMARK 3 T33: 0.0843 T12: 0.0104 REMARK 3 T13: 0.0007 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.1302 L22: 2.2373 REMARK 3 L33: 1.2141 L12: -0.0052 REMARK 3 L13: 1.1592 L23: 0.2044 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: 0.0217 S13: 0.0345 REMARK 3 S21: 0.2145 S22: -0.0276 S23: 0.1177 REMARK 3 S31: 0.1415 S32: -0.1763 S33: -0.0089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000236701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400-500, NACL, PH 6.0-7.5, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.28950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.28950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CD CE NZ REMARK 470 LYS A 53 CD CE NZ REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 LYS A 150 CE NZ REMARK 470 LYS A 174 CD CE NZ REMARK 470 LYS A 197 CD CE NZ REMARK 470 LYS A 203 CD CE NZ REMARK 470 LYS A 209 CE NZ REMARK 470 LYS A 216 CD CE NZ REMARK 470 PHE A 219 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 244 CD CE NZ REMARK 470 LYS A 361 CD CE NZ REMARK 470 LYS A 384 CD CE NZ REMARK 470 PHE A 407 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 415 CD CE NZ REMARK 470 LEU A 425 CG CD1 CD2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 ARG A 473 CD NE CZ NH1 NH2 REMARK 470 LYS A 474 CD CE NZ REMARK 470 LYS A 475 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 610 O HOH A 711 1.97 REMARK 500 O HOH A 610 O HOH A 742 1.97 REMARK 500 O HOH A 690 O HOH A 711 2.12 REMARK 500 O HOH A 646 O HOH A 746 2.13 REMARK 500 O HOH A 644 O HOH A 726 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 151 -33.17 -131.45 REMARK 500 ASP A 279 62.63 -154.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLB A 502 REMARK 610 OLB A 503 REMARK 610 OLB A 504 REMARK 610 OLB A 505 REMARK 610 OLB A 506 REMARK 610 OLB A 507 REMARK 610 OLB A 508 REMARK 610 OLC A 510 REMARK 610 OLC A 511 REMARK 610 OLC A 512 REMARK 610 OLC A 513 REMARK 610 OLC A 514 REMARK 610 OLC A 515 REMARK 610 OLC A 516 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 235 OD1 REMARK 620 2 ASN A 374 OD1 97.2 REMARK 620 3 ASP A 378 OD1 88.6 90.7 REMARK 620 4 VAL A 390 O 117.3 145.3 93.4 REMARK 620 5 THR A 394 OG1 84.1 84.7 170.8 94.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 517 DBREF 6NC9 A 1 475 UNP B7IE18 MURJ_THEAB 1 475 SEQRES 1 A 475 MET SER ILE LEU PHE SER SER ILE LEU PHE SER ILE ALA SEQRES 2 A 475 THR PHE PHE SER ARG ILE LEU GLY LEU PHE ARG ASP VAL SEQRES 3 A 475 LEU PHE ALA LYS TYR PHE GLY VAL SER TYR GLU LEU ASP SEQRES 4 A 475 ALA TYR PHE ILE ALA ILE MET PHE PRO PHE PHE LEU ARG SEQRES 5 A 475 LYS VAL PHE GLY GLU GLY ALA MET SER SER ALA PHE VAL SEQRES 6 A 475 PRO LEU TYR SER GLU LYS SER GLY GLU GLU LYS ASP LYS SEQRES 7 A 475 PHE LEU SER SER VAL ILE ASN GLY PHE SER LEU ILE ILE SEQRES 8 A 475 LEU ALA LEU VAL ILE LEU SER TYR PHE PHE PRO GLU LEU SEQRES 9 A 475 ILE ILE ASN LEU PHE GLY ALA GLY SER SER HIS GLU THR SEQRES 10 A 475 LYS ILE LEU ALA LYS LYS LEU LEU LEU ILE THR SER PRO SEQRES 11 A 475 SER ILE TYR PHE ILE PHE LEU TRP ALA ILE SER TYR SER SEQRES 12 A 475 ILE LEU ASN THR ASN ASN LYS PHE PHE TRP PRO ALA LEU SEQRES 13 A 475 THR PRO SER ILE SER ASN ILE THR ILE ILE ILE GLY THR SEQRES 14 A 475 PHE LEU SER THR LYS TYR GLY ILE ILE SER PRO THR ILE SEQRES 15 A 475 GLY PHE LEU ILE GLY SER ILE LEU MET PHE PHE SER ILE SEQRES 16 A 475 ILE LYS SER ILE ILE LYS HIS LYS TYR TYR PHE THR ILE SEQRES 17 A 475 LYS HIS PHE PRO HIS PHE LEU LYS LEU PHE PHE PRO THR SEQRES 18 A 475 PHE MET THR MET VAL VAL SER GLN ILE ASN THR VAL VAL SEQRES 19 A 475 ASP MET ASN VAL VAL SER PHE TYR ASP LYS GLY SER ILE SEQRES 20 A 475 SER TYR LEU GLN TYR ALA SER ARG PHE TYR LEU LEU PRO SEQRES 21 A 475 TYR GLY LEU PHE ALA VAL SER VAL SER THR VAL VAL LEU SEQRES 22 A 475 SER LYS ILE SER ASN ASP ARG LYS ASN PHE ASN TYR HIS SEQRES 23 A 475 LEU ASN ASP ALA LEU LYS THR THR LEU PHE PHE THR ILE SEQRES 24 A 475 PRO SER MET VAL GLY LEU ILE PHE LEU SER THR PRO ILE SEQRES 25 A 475 ILE ARG PHE PHE TYR GLU HIS GLY ALA PHE THR SER LYS SEQRES 26 A 475 ASP THR LEU ILE THR SER LYS ILE LEU ILE ALA TYR THR SEQRES 27 A 475 LEU GLY LEU PRO PHE TYR GLY ILE TYR SER THR ILE SER SEQRES 28 A 475 ARG SER TYR HIS ALA ILE LYS ASN THR LYS THR PRO PHE SEQRES 29 A 475 ILE ALA ALA THR ILE VAL SER LEU SER ASN ILE ILE LEU SEQRES 30 A 475 ASP ILE ILE PHE GLY LEU LYS TYR GLY PRO ILE GLY VAL SEQRES 31 A 475 ALA LEU ALA THR SER ILE ALA GLY ILE ILE GLY VAL LEU SEQRES 32 A 475 TYR LEU LEU PHE SER VAL LYS THR PHE PRO ILE LYS ASP SEQRES 33 A 475 PHE LEU LYS ILE SER LEU ASN SER LEU ILE MET LEU PHE SEQRES 34 A 475 VAL ILE TYR LEU THR ASP PHE THR ASP ASN GLU PHE TRP SEQRES 35 A 475 PHE LEU ILE GLN ILE LEU ILE GLY ILE LEU VAL TYR LEU SEQRES 36 A 475 ILE PHE SER SER ILE PHE TYR ARG ASP LEU ILE ARG ARG SEQRES 37 A 475 PHE LEU TYR ALA ARG LYS LYS HET 1PE A 501 38 HET OLB A 502 54 HET OLB A 503 45 HET OLB A 504 48 HET OLB A 505 42 HET OLB A 506 45 HET OLB A 507 54 HET OLB A 508 54 HET NA A 509 1 HET OLC A 510 51 HET OLC A 511 30 HET OLC A 512 35 HET OLC A 513 54 HET OLC A 514 32 HET OLC A 515 35 HET OLC A 516 20 HET OLC A 517 65 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM NA SODIUM ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN 1PE PEG400 HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 1PE C10 H22 O6 FORMUL 3 OLB 7(C21 H40 O4) FORMUL 10 NA NA 1+ FORMUL 11 OLC 8(C21 H40 O4) FORMUL 19 HOH *156(H2 O) HELIX 1 AA1 SER A 2 PHE A 32 1 31 HELIX 2 AA2 SER A 35 GLU A 57 1 23 HELIX 3 AA3 MET A 60 GLU A 70 1 11 HELIX 4 AA4 SER A 72 PHE A 101 1 30 HELIX 5 AA5 PHE A 101 GLY A 110 1 10 HELIX 6 AA6 SER A 114 SER A 129 1 16 HELIX 7 AA7 PRO A 130 ASN A 148 1 19 HELIX 8 AA8 PHE A 151 THR A 157 1 7 HELIX 9 AA9 THR A 157 LEU A 171 1 15 HELIX 10 AB1 LEU A 171 GLY A 176 1 6 HELIX 11 AB2 ILE A 177 ILE A 195 1 19 HELIX 12 AB3 ILE A 196 LYS A 201 1 6 HELIX 13 AB4 HIS A 210 VAL A 226 1 17 HELIX 14 AB5 VAL A 226 ASP A 243 1 18 HELIX 15 AB6 SER A 246 ALA A 265 1 20 HELIX 16 AB7 VAL A 266 ASN A 278 1 13 HELIX 17 AB8 ASP A 279 LYS A 281 5 3 HELIX 18 AB9 ASN A 282 LEU A 308 1 27 HELIX 19 AC1 LEU A 308 GLU A 318 1 11 HELIX 20 AC2 THR A 323 LEU A 339 1 17 HELIX 21 AC3 GLY A 340 ILE A 357 1 18 HELIX 22 AC4 THR A 360 LYS A 410 1 51 HELIX 23 AC5 PRO A 413 THR A 434 1 22 HELIX 24 AC6 PHE A 441 TYR A 462 1 22 HELIX 25 AC7 TYR A 462 LYS A 475 1 14 LINK OD1 ASP A 235 NA NA A 509 1555 1555 2.45 LINK OD1 ASN A 374 NA NA A 509 1555 1555 2.26 LINK OD1 ASP A 378 NA NA A 509 1555 1555 2.42 LINK O VAL A 390 NA NA A 509 1555 1555 2.33 LINK OG1 THR A 394 NA NA A 509 1555 1555 2.33 SITE 1 AC1 6 TYR A 285 ASN A 288 ASP A 289 LYS A 292 SITE 2 AC1 6 ASP A 416 OLB A 506 SITE 1 AC2 9 TYR A 36 GLU A 37 LYS A 123 LEU A 126 SITE 2 AC2 9 PRO A 130 ILE A 178 OLC A 511 HOH A 606 SITE 3 AC2 9 HOH A 716 SITE 1 AC3 8 ILE A 306 PHE A 307 SER A 309 THR A 310 SITE 2 AC3 8 PRO A 311 SER A 331 OLC A 515 HOH A 605 SITE 1 AC4 8 LYS A 419 PHE A 461 TYR A 462 ARG A 463 SITE 2 AC4 8 ASP A 464 LEU A 465 HOH A 604 HOH A 751 SITE 1 AC5 7 ALA A 93 ILE A 208 PHE A 211 PRO A 212 SITE 2 AC5 7 PHE A 241 ILE A 379 OLC A 512 SITE 1 AC6 8 LEU A 4 ASP A 289 THR A 293 PHE A 296 SITE 2 AC6 8 TYR A 462 LEU A 465 1PE A 501 OLC A 510 SITE 1 AC7 5 THR A 164 GLY A 168 TYR A 175 SER A 179 SITE 2 AC7 5 OLC A 511 SITE 1 AC8 7 ILE A 43 ALA A 44 MET A 46 PHE A 47 SITE 2 AC8 7 PRO A 48 ILE A 106 ILE A 132 SITE 1 AC9 6 ASP A 235 ASN A 374 ASP A 378 VAL A 390 SITE 2 AC9 6 ALA A 393 THR A 394 SITE 1 AD1 5 SER A 2 PHE A 5 LEU A 465 PHE A 469 SITE 2 AD1 5 OLB A 506 SITE 1 AD2 4 ILE A 178 TYR A 385 OLB A 502 OLB A 507 SITE 1 AD3 4 ILE A 379 ILE A 380 LEU A 383 OLB A 505 SITE 1 AD4 5 TRP A 153 THR A 157 ILE A 160 SER A 194 SITE 2 AD4 5 HOH A 693 SITE 1 AD5 1 OLB A 503 SITE 1 AD6 3 MET A 46 PHE A 50 PHE A 109 SITE 1 AD7 7 ASN A 85 SER A 88 LEU A 89 LEU A 92 SITE 2 AD7 7 PHE A 206 THR A 207 ILE A 208 CRYST1 128.579 57.443 86.406 90.00 100.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007777 0.000000 0.001473 0.00000 SCALE2 0.000000 0.017409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011779 0.00000