HEADER LYASE 14-DEC-18 6NDS TITLE STRUCTURE OF AN HMG-COA LYASE FROM ACENITOBACTER BAUMANNII IN COMPLEX TITLE 2 WITH COENZYME A AND 3-METHYLMALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXY-3-METHYLGLUTARYL-COA LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYDROXYMETHYLGLUTARYL-COA LYASE,HYDROXYMETHYLGLUTARYL-COA COMPND 5 LYASE YNGG; COMPND 6 EC: 4.1.3.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: YNGG_1, ABUW_2506, CBI29_01513, DV997_16665; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: ACBAC.18886.A.B2 KEYWDS SSGCID, ACINETOBACTER BAUMANNII, 3-HYDROXY-3-METHYLGLUTARYL-COA, COA, KEYWDS 2 BETA-METHYLMALATE, HMG, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-MAR-24 6NDS 1 REMARK REVDAT 1 18-DEC-19 6NDS 0 JRNL AUTH S.J.MAYCLIN,J.ABENDROTH,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURE OF AN HMG-COA LYASE FROM ACENITOBACTER BAUMANNII JRNL TITL 2 IN COMPLEX WITH COENZYME A AND 3-METHYLMALATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 39449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 4.2414 1.00 2449 162 0.1592 0.1469 REMARK 3 2 4.2414 - 3.3668 1.00 2306 149 0.1395 0.1542 REMARK 3 3 3.3668 - 2.9413 1.00 2284 149 0.1544 0.1647 REMARK 3 4 2.9413 - 2.6724 1.00 2279 135 0.1543 0.1845 REMARK 3 5 2.6724 - 2.4809 1.00 2252 143 0.1521 0.1642 REMARK 3 6 2.4809 - 2.3346 0.99 2223 150 0.1497 0.1807 REMARK 3 7 2.3346 - 2.2177 0.98 2217 138 0.1397 0.1835 REMARK 3 8 2.2177 - 2.1212 0.99 2224 136 0.1426 0.1410 REMARK 3 9 2.1212 - 2.0395 0.98 2215 141 0.1526 0.1716 REMARK 3 10 2.0395 - 1.9692 0.98 2173 139 0.1490 0.1995 REMARK 3 11 1.9692 - 1.9076 0.97 2156 146 0.1601 0.1877 REMARK 3 12 1.9076 - 1.8531 0.96 2151 120 0.1503 0.1470 REMARK 3 13 1.8531 - 1.8043 0.95 2081 155 0.1542 0.1875 REMARK 3 14 1.8043 - 1.7602 0.94 2106 117 0.1618 0.1776 REMARK 3 15 1.7602 - 1.7202 0.92 2022 141 0.1782 0.2186 REMARK 3 16 1.7202 - 1.6836 0.91 2009 137 0.2106 0.2216 REMARK 3 17 1.6836 - 1.6499 0.87 1923 121 0.2398 0.3094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4259 31.6906 4.3439 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.1110 REMARK 3 T33: 0.1177 T12: -0.0244 REMARK 3 T13: 0.0263 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.3207 L22: 3.1558 REMARK 3 L33: 2.6299 L12: -1.6435 REMARK 3 L13: 1.7325 L23: -0.9999 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.0921 S13: -0.0416 REMARK 3 S21: -0.0981 S22: 0.0357 S23: 0.0945 REMARK 3 S31: -0.0161 S32: 0.0480 S33: -0.0467 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5521 27.6572 -6.3483 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2167 REMARK 3 T33: 0.1478 T12: -0.0143 REMARK 3 T13: 0.0125 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.0463 L22: 3.3700 REMARK 3 L33: 1.7179 L12: 0.9748 REMARK 3 L13: 0.1568 L23: 0.1165 REMARK 3 S TENSOR REMARK 3 S11: -0.0943 S12: 0.2412 S13: 0.0935 REMARK 3 S21: -0.3605 S22: 0.0704 S23: 0.0469 REMARK 3 S31: 0.0211 S32: 0.0509 S33: -0.0085 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0993 12.8009 -2.1001 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.2030 REMARK 3 T33: 0.1800 T12: 0.0152 REMARK 3 T13: 0.0322 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 0.9419 L22: 1.4240 REMARK 3 L33: 1.8767 L12: 0.3589 REMARK 3 L13: 0.1940 L23: -0.3615 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.2650 S13: -0.1420 REMARK 3 S21: -0.3585 S22: 0.0805 S23: -0.1177 REMARK 3 S31: 0.2912 S32: 0.0037 S33: -0.0085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3603 25.1358 17.2768 REMARK 3 T TENSOR REMARK 3 T11: 0.1189 T22: 0.1452 REMARK 3 T33: 0.1432 T12: 0.0016 REMARK 3 T13: -0.0038 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.9177 L22: 2.6005 REMARK 3 L33: 1.6900 L12: -0.3522 REMARK 3 L13: -0.3999 L23: -0.0506 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0517 S13: 0.0919 REMARK 3 S21: 0.1175 S22: -0.0224 S23: 0.1303 REMARK 3 S31: -0.0654 S32: -0.1239 S33: 0.0016 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.605 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.24 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TOP96 D11 (298571D11): 2 0.1 M SODIUM REMARK 280 ACETATE: HCL, PH 4.6, 8% (W/V) PEG4000, 4MM NAD (BSI1606), 4MM REMARK 280 HMG-COA (BSI108595); ACBAC.18179.A.B1.PW38191 CONC 23.33MG/ML; REMARK 280 20EG; PUCK/PIN ID TUD0-16, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.42500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.73000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.71250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.73000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.13750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.71250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.13750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.42500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 306 REMARK 465 TYR A 307 REMARK 465 ILE A 308 REMARK 465 LYS A 309 REMARK 465 SER A 310 REMARK 465 LEU A 311 REMARK 465 ASN A 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 ILE A 304 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 738 O HOH A 738 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -71.78 -110.61 REMARK 500 PHE A 51 74.11 -119.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CIT A 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD2 REMARK 620 2 HIS A 207 NE2 87.2 REMARK 620 3 HIS A 209 NE2 100.4 93.0 REMARK 620 4 CIT A 502 O7 90.4 96.2 166.2 REMARK 620 5 CIT A 502 O6 168.6 95.1 90.6 78.3 REMARK 620 6 HOH A 623 O 88.1 175.1 89.1 82.6 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 507 DBREF1 6NDS A 1 312 UNP A0A0D5YK08_ACIBA DBREF2 6NDS A A0A0D5YK08 1 312 SEQADV 6NDS MET A -7 UNP A0A0D5YK0 INITIATING METHIONINE SEQADV 6NDS ALA A -6 UNP A0A0D5YK0 EXPRESSION TAG SEQADV 6NDS HIS A -5 UNP A0A0D5YK0 EXPRESSION TAG SEQADV 6NDS HIS A -4 UNP A0A0D5YK0 EXPRESSION TAG SEQADV 6NDS HIS A -3 UNP A0A0D5YK0 EXPRESSION TAG SEQADV 6NDS HIS A -2 UNP A0A0D5YK0 EXPRESSION TAG SEQADV 6NDS HIS A -1 UNP A0A0D5YK0 EXPRESSION TAG SEQADV 6NDS HIS A 0 UNP A0A0D5YK0 EXPRESSION TAG SEQRES 1 A 320 MET ALA HIS HIS HIS HIS HIS HIS MET THR ALA PHE SER SEQRES 2 A 320 ASP LEU LEU VAL VAL GLN GLU VAL SER PRO ARG ASP GLY SEQRES 3 A 320 LEU GLN ILE GLU PRO THR TRP VAL PRO THR ASP LYS LYS SEQRES 4 A 320 ILE ASP LEU ILE ASN GLN LEU SER THR MET GLY PHE SER SEQRES 5 A 320 ARG ILE GLU ALA GLY SER PHE VAL SER PRO LYS ALA ILE SEQRES 6 A 320 PRO ASN LEU ARG ASP GLY GLU GLU VAL PHE THR GLY ILE SEQRES 7 A 320 THR ARG HIS LYS ASP ILE ILE TYR VAL GLY LEU ILE PRO SEQRES 8 A 320 ASN LEU LYS GLY ALA LEU ARG ALA VAL GLU ALA ASN ALA SEQRES 9 A 320 ASN GLU LEU ASN LEU VAL LEU SER ALA SER GLN THR HIS SEQRES 10 A 320 ASN LEU ALA ASN MET ARG MET THR LYS ALA GLN SER PHE SEQRES 11 A 320 ALA GLY PHE THR GLU ILE VAL GLU GLN LEU GLN GLY LYS SEQRES 12 A 320 THR GLN PHE ASN GLY THR VAL ALA THR THR PHE GLY CYS SEQRES 13 A 320 PRO PHE GLU GLY LYS ILE SER GLU ARG GLU VAL PHE SER SEQRES 14 A 320 LEU VAL GLU HIS TYR LEU LYS LEU GLY ILE HIS ASN ILE SEQRES 15 A 320 THR LEU ALA ASP THR THR GLY MET ALA ASN PRO VAL GLN SEQRES 16 A 320 VAL LYS ARG ILE VAL SER HIS VAL LEU SER LEU ILE SER SEQRES 17 A 320 PRO GLU GLN LEU THR LEU HIS PHE HIS ASN THR ARG GLY SEQRES 18 A 320 LEU GLY LEU THR ASN VAL LEU ALA ALA TYR GLU VAL GLY SEQRES 19 A 320 ALA ARG ARG PHE ASP ALA ALA LEU GLY GLY LEU GLY GLY SEQRES 20 A 320 CYS PRO PHE ALA PRO GLY ALA SER GLY ASN ILE CYS THR SEQRES 21 A 320 GLU ASP LEU VAL ASN MET CYS GLU GLU ILE GLY ILE PRO SEQRES 22 A 320 THR THR ILE ASP LEU ASP ALA LEU ILE GLN LEU SER ARG SEQRES 23 A 320 THR LEU PRO ALA LEU LEU GLY HIS ASP THR PRO SER GLN SEQRES 24 A 320 LEU ALA LYS ALA GLY ARG ASN THR ASP LEU HIS PRO ILE SEQRES 25 A 320 PRO ASP TYR ILE LYS SER LEU ASN HET COA A 501 48 HET CIT A 502 10 HET ACT A 503 4 HET ACT A 504 4 HET ACT A 505 4 HET EDO A 506 4 HET ZN A 507 1 HETNAM COA COENZYME A HETNAM CIT CITRIC ACID HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 CIT C6 H8 O7 FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 ZN ZN 2+ FORMUL 9 HOH *267(H2 O) HELIX 1 AA1 ALA A 3 LEU A 7 5 5 HELIX 2 AA2 ARG A 16 ILE A 21 1 6 HELIX 3 AA3 PRO A 27 SER A 39 1 13 HELIX 4 AA4 ILE A 57 ARG A 61 5 5 HELIX 5 AA5 ASP A 62 ILE A 70 1 9 HELIX 6 AA6 ASN A 84 ALA A 94 1 11 HELIX 7 AA7 SER A 106 ARG A 115 1 10 HELIX 8 AA8 THR A 117 GLN A 133 1 17 HELIX 9 AA9 SER A 155 LEU A 169 1 15 HELIX 10 AB1 ASN A 184 LEU A 196 1 13 HELIX 11 AB2 LEU A 214 VAL A 225 1 12 HELIX 12 AB3 ALA A 233 LEU A 237 5 5 HELIX 13 AB4 CYS A 251 GLY A 263 1 13 HELIX 14 AB5 ASP A 269 ARG A 278 1 10 HELIX 15 AB6 THR A 279 GLY A 285 1 7 HELIX 16 AB7 SER A 290 GLY A 296 1 7 SHEET 1 AA1 9 VAL A 9 GLU A 12 0 SHEET 2 AA1 9 ARG A 45 SER A 50 1 O GLU A 47 N GLU A 12 SHEET 3 AA1 9 ILE A 77 ILE A 82 1 O VAL A 79 N ILE A 46 SHEET 4 AA1 9 GLU A 98 SER A 104 1 O ASN A 100 N ILE A 82 SHEET 5 AA1 9 GLN A 137 ALA A 143 1 O THR A 141 N LEU A 101 SHEET 6 AA1 9 ILE A 174 ASP A 178 1 O THR A 175 N VAL A 142 SHEET 7 AA1 9 LEU A 204 PHE A 208 1 O THR A 205 N ILE A 174 SHEET 8 AA1 9 ARG A 229 ALA A 232 1 O ARG A 229 N LEU A 206 SHEET 9 AA1 9 VAL A 9 GLU A 12 1 N GLN A 11 O PHE A 230 LINK OD2 ASP A 17 ZN ZN A 507 1555 1555 2.08 LINK NE2 HIS A 207 ZN ZN A 507 1555 1555 2.18 LINK NE2 HIS A 209 ZN ZN A 507 1555 1555 2.20 LINK O7 CIT A 502 ZN ZN A 507 1555 1555 2.12 LINK O6 CIT A 502 ZN ZN A 507 1555 1555 2.17 LINK ZN ZN A 507 O HOH A 623 1555 1555 2.22 SITE 1 AC1 15 PHE A 51 VAL A 52 SER A 53 ILE A 57 SITE 2 AC1 15 ASN A 84 GLY A 87 ARG A 90 ASN A 113 SITE 3 AC1 15 MET A 114 ARG A 115 CYS A 240 CIT A 502 SITE 4 AC1 15 HOH A 652 HOH A 683 HOH A 722 SITE 1 AC2 12 ARG A 16 ASP A 17 GLN A 20 ALA A 143 SITE 2 AC2 12 ALA A 177 THR A 179 HIS A 207 HIS A 209 SITE 3 AC2 12 CYS A 240 COA A 501 ZN A 507 HOH A 623 SITE 1 AC3 3 TYR A 223 GLY A 263 HOH A 653 SITE 1 AC4 6 ASN A 184 GLN A 187 ARG A 190 GLU A 261 SITE 2 AC4 6 ILE A 262 HOH A 781 SITE 1 AC5 6 PRO A 281 ASP A 287 THR A 288 ALA A 293 SITE 2 AC5 6 LYS A 294 HOH A 628 SITE 1 AC6 6 THR A 68 GLY A 69 ILE A 70 HOH A 655 SITE 2 AC6 6 HOH A 659 HOH A 711 SITE 1 AC7 5 ASP A 17 HIS A 207 HIS A 209 CIT A 502 SITE 2 AC7 5 HOH A 623 CRYST1 91.460 91.460 78.850 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012682 0.00000