HEADER LIGASE 19-DEC-18 6NFD TITLE BETA-LACTAMASE SHV-11 FROM KLEBSIELLA PNEUMONIAE STRAIN NTUH-K2044 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE SHV-11; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MUTATION S32R, F147L RELATIVE TO GB BAH63300. SER AND COMPND 6 ASN AT N-TERMINAL ARE EXPRESSION TAGS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE NTUH- SOURCE 3 K2044; SOURCE 4 ORGANISM_TAXID: 484021; SOURCE 5 STRAIN: NTUH-K2044; SOURCE 6 GENE: BLASHV-11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,L.WELK,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 5 16-OCT-24 6NFD 1 REMARK REVDAT 4 15-NOV-23 6NFD 1 REMARK REVDAT 3 11-OCT-23 6NFD 1 REMARK REVDAT 2 18-DEC-19 6NFD 1 REMARK REVDAT 1 26-DEC-18 6NFD 0 JRNL AUTH J.OSIPIUK,L.WELK,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL BETA-LACTAMASE SHV-11 FROM KLEBSIELLA PNEUMONIAE STRAIN JRNL TITL 2 NTUH-K2044 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 121889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 383 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2273 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2209 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3114 ; 1.643 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5126 ; 1.545 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 5.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;29.212 ;19.928 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;11.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;16.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2628 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4482 ; 1.502 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 265 ;25.441 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4572 ; 9.843 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 43.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4MBF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.1 M SPG BUFFER, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.07900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.77150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.07900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.77150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.24000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.07900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.77150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.24000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.07900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.77150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 638 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 846 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 888 O HOH A 892 2.09 REMARK 500 O HOH A 884 O HOH A 895 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 65 -142.05 54.34 REMARK 500 TYR A 101 72.45 59.18 REMARK 500 TYR A 101 68.88 63.85 REMARK 500 VAL A 155 -50.86 -121.37 REMARK 500 LEU A 216 -128.62 -102.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1011 DISTANCE = 6.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP97199 RELATED DB: TARGETTRACK DBREF 6NFD A 19 286 PDB 6NFD 6NFD 19 286 SEQRES 1 A 268 SER ASN ALA SER PRO GLN PRO LEU GLU GLN ILE LYS GLN SEQRES 2 A 268 ARG GLU SER GLN LEU SER GLY ARG VAL GLY MSE ILE GLU SEQRES 3 A 268 MSE ASP LEU ALA SER GLY ARG THR LEU THR ALA TRP ARG SEQRES 4 A 268 ALA ASP GLU ARG PHE PRO MSE MSE SER THR PHE LYS VAL SEQRES 5 A 268 VAL LEU CYS GLY ALA VAL LEU ALA ARG VAL ASP ALA GLY SEQRES 6 A 268 ASP GLU GLN LEU GLU ARG LYS ILE HIS TYR ARG GLN GLN SEQRES 7 A 268 ASP LEU VAL ASP TYR SER PRO VAL SER GLU LYS HIS LEU SEQRES 8 A 268 ALA ASP GLY MSE THR VAL GLY GLU LEU CYS ALA ALA ALA SEQRES 9 A 268 ILE THR MSE SER ASP ASN SER ALA ALA ASN LEU LEU LEU SEQRES 10 A 268 ALA THR VAL GLY GLY PRO ALA GLY LEU THR ALA LEU LEU SEQRES 11 A 268 ARG GLN ILE GLY ASP ASN VAL THR ARG LEU ASP ARG TRP SEQRES 12 A 268 GLU THR GLU LEU ASN GLU ALA LEU PRO GLY ASP ALA ARG SEQRES 13 A 268 ASP THR THR THR PRO ALA SER MSE ALA ALA THR LEU ARG SEQRES 14 A 268 LYS LEU LEU THR SER GLN ARG LEU SER ALA ARG SER GLN SEQRES 15 A 268 ARG GLN LEU LEU GLN TRP MSE VAL ASP ASP ARG VAL ALA SEQRES 16 A 268 GLY PRO LEU ILE ARG SER VAL LEU PRO ALA GLY TRP PHE SEQRES 17 A 268 ILE ALA ASP LYS THR GLY ALA GLY GLU ARG GLY ALA ARG SEQRES 18 A 268 GLY ILE VAL ALA LEU LEU GLY PRO ASN ASN LYS ALA GLU SEQRES 19 A 268 ARG ILE VAL VAL ILE TYR LEU ARG ASP THR PRO ALA SER SEQRES 20 A 268 MSE ALA GLU ARG ASN GLN GLN ILE ALA GLY ILE GLY ALA SEQRES 21 A 268 ALA LEU ILE GLU HIS TRP GLN ARG HET MSE A 42 8 HET MSE A 45 8 HET MSE A 64 8 HET MSE A 65 8 HET MSE A 113 8 HET MSE A 125 8 HET MSE A 182 8 HET MSE A 207 8 HET MSE A 266 8 HET PO4 A 501 5 HET EDO A 502 4 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *411(H2 O) HELIX 1 AA1 GLN A 24 SER A 37 1 14 HELIX 2 AA2 THR A 67 ALA A 82 1 16 HELIX 3 AA3 ARG A 94 LEU A 98 5 5 HELIX 4 AA4 VAL A 104 HIS A 108 5 5 HELIX 5 AA5 VAL A 115 MSE A 125 1 11 HELIX 6 AA6 ASP A 127 ALA A 136 1 10 HELIX 7 AA7 GLY A 139 ILE A 151 1 13 HELIX 8 AA8 THR A 163 GLU A 167 5 5 HELIX 9 AA9 THR A 178 SER A 192 1 15 HELIX 10 AB1 SER A 196 ASP A 209 1 14 HELIX 11 AB2 LEU A 216 LEU A 221 5 6 HELIX 12 AB3 SER A 265 HIS A 283 1 19 SHEET 1 AA1 5 THR A 52 TRP A 56 0 SHEET 2 AA1 5 ARG A 39 ASP A 46 -1 N GLU A 44 O LEU A 53 SHEET 3 AA1 5 ARG A 253 ARG A 260 -1 O TYR A 258 N GLY A 41 SHEET 4 AA1 5 ARG A 239 GLY A 246 -1 N ARG A 239 O LEU A 259 SHEET 5 AA1 5 PHE A 226 ALA A 233 -1 N ALA A 228 O LEU A 244 SHEET 1 AA2 2 PHE A 62 PRO A 63 0 SHEET 2 AA2 2 THR A 176 THR A 177 -1 O THR A 177 N PHE A 62 SHEET 1 AA3 2 LYS A 90 ILE A 91 0 SHEET 2 AA3 2 MSE A 113 THR A 114 -1 O MSE A 113 N ILE A 91 LINK C GLY A 41 N MSE A 42 1555 1555 1.32 LINK C MSE A 42 N ILE A 43 1555 1555 1.32 LINK C GLU A 44 N MSE A 45 1555 1555 1.32 LINK C MSE A 45 N ASP A 46 1555 1555 1.32 LINK C PRO A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N MSE A 65 1555 1555 1.32 LINK C MSE A 65 N SER A 66 1555 1555 1.32 LINK C GLY A 112 N MSE A 113 1555 1555 1.32 LINK C MSE A 113 N THR A 114 1555 1555 1.32 LINK C THR A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N SER A 126 1555 1555 1.32 LINK C SER A 181 N MSE A 182 1555 1555 1.32 LINK C MSE A 182 N ALA A 183 1555 1555 1.33 LINK C TRP A 206 N MSE A 207 1555 1555 1.33 LINK C MSE A 207 N VAL A 208 1555 1555 1.32 LINK C SER A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N ALA A 267 1555 1555 1.33 CISPEP 1 GLU A 162 THR A 163 0 0.81 SITE 1 AC1 13 PRO A 23 ARG A 160 GLU A 167 ARG A 174 SITE 2 AC1 13 HOH A 642 HOH A 666 HOH A 670 HOH A 695 SITE 3 AC1 13 HOH A 703 HOH A 723 HOH A 816 HOH A 855 SITE 4 AC1 13 HOH A 963 SITE 1 AC2 11 SER A 66 SER A 126 THR A 231 GLY A 232 SITE 2 AC2 11 ALA A 233 ARG A 239 HOH A 705 HOH A 748 SITE 3 AC2 11 HOH A 857 HOH A 900 HOH A 944 CRYST1 50.158 123.543 124.480 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008033 0.00000