HEADER HYDROLASE 20-DEC-18 6NFL TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B WITH LOOP TITLE 2 7 FROM APOBEC3G COMPLEXED WITH 2-HP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 5 EC: 3.5.4.38; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.ORELLANA,H.AIHARA REVDAT 4 16-OCT-24 6NFL 1 REMARK REVDAT 3 11-OCT-23 6NFL 1 REMARK REVDAT 2 29-JAN-20 6NFL 1 JRNL REVDAT 1 25-DEC-19 6NFL 0 JRNL AUTH K.SHI,O.DEMIR,M.A.CARPENTER,S.BANERJEE,D.A.HARKI,R.E.AMARO, JRNL AUTH 2 R.S.HARRIS,H.AIHARA JRNL TITL ACTIVE SITE PLASTICITY AND POSSIBLE MODES OF CHEMICAL JRNL TITL 2 INHIBITION OF THE HUMAN DNA DEAMINASE APOBEC3B JRNL REF FASEB BIOADV V. 2 49 2020 JRNL REFN ESSN 2573-9832 JRNL DOI 10.1096/FBA.2019-00068 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3366: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 20663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9209 - 3.4620 0.99 2685 150 0.1582 0.1731 REMARK 3 2 3.4620 - 2.7481 1.00 2534 137 0.1544 0.1960 REMARK 3 3 2.7481 - 2.4007 1.00 2481 126 0.1541 0.1791 REMARK 3 4 2.4007 - 2.1813 0.99 2469 135 0.1471 0.1877 REMARK 3 5 2.1813 - 2.0249 0.98 2424 116 0.1521 0.2036 REMARK 3 6 2.0249 - 1.9055 0.98 2443 121 0.1809 0.2208 REMARK 3 7 1.9055 - 1.8101 0.96 2319 142 0.2074 0.2502 REMARK 3 8 1.8101 - 1.7313 0.92 2257 124 0.2428 0.2933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1613 REMARK 3 ANGLE : 0.714 2184 REMARK 3 CHIRALITY : 0.045 220 REMARK 3 PLANARITY : 0.004 291 REMARK 3 DIHEDRAL : 20.772 957 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1091 -11.2182 -14.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.2035 REMARK 3 T33: 0.1959 T12: 0.0270 REMARK 3 T13: 0.0095 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.0337 L22: 2.4635 REMARK 3 L33: 4.0284 L12: 1.4160 REMARK 3 L13: 2.6770 L23: 1.8620 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: -0.0857 S13: 0.0908 REMARK 3 S21: 0.1042 S22: -0.1059 S23: 0.2385 REMARK 3 S31: 0.1106 S32: -0.1352 S33: 0.0548 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5005 -23.5830 -28.2134 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2698 REMARK 3 T33: 0.2028 T12: -0.0066 REMARK 3 T13: 0.0178 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 5.0762 L22: 4.2560 REMARK 3 L33: 5.1836 L12: -4.1843 REMARK 3 L13: -4.5296 L23: 2.8085 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.5075 S13: 0.1802 REMARK 3 S21: -0.3091 S22: -0.0860 S23: -0.3301 REMARK 3 S31: 0.1677 S32: -0.0910 S33: -0.0820 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8012 -25.9900 -22.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2356 REMARK 3 T33: 0.1872 T12: -0.0276 REMARK 3 T13: -0.0367 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 3.2663 L22: 4.6169 REMARK 3 L33: 3.1556 L12: -1.3220 REMARK 3 L13: 0.3735 L23: -0.0983 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: 0.3040 S13: -0.4236 REMARK 3 S21: -0.2413 S22: 0.0801 S23: 0.3649 REMARK 3 S31: 0.2794 S32: -0.3924 S33: 0.0285 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0036 -29.2526 -17.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.1536 REMARK 3 T33: 0.2180 T12: 0.0016 REMARK 3 T13: -0.0004 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 3.2567 L22: 3.9761 REMARK 3 L33: 4.0593 L12: -0.3214 REMARK 3 L13: -0.0994 L23: 0.6223 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.0701 S13: -0.4797 REMARK 3 S21: 0.2065 S22: 0.0316 S23: 0.1388 REMARK 3 S31: 0.4846 S32: -0.2015 S33: 0.0538 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5981 -29.2544 -18.9956 REMARK 3 T TENSOR REMARK 3 T11: 0.3385 T22: 0.1625 REMARK 3 T33: 0.2068 T12: 0.0647 REMARK 3 T13: 0.0308 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.6130 L22: 2.4194 REMARK 3 L33: 2.7075 L12: -0.5953 REMARK 3 L13: -0.4850 L23: 2.5562 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: 0.1416 S13: -0.4389 REMARK 3 S21: -0.0447 S22: -0.1029 S23: -0.5933 REMARK 3 S31: 0.5691 S32: 0.1410 S33: -0.0597 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0375 -24.4480 -2.9907 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1899 REMARK 3 T33: 0.1761 T12: -0.0141 REMARK 3 T13: 0.0134 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.0692 L22: 4.3001 REMARK 3 L33: 6.8652 L12: -1.4264 REMARK 3 L13: -4.1760 L23: 3.2155 REMARK 3 S TENSOR REMARK 3 S11: -0.2585 S12: -0.1682 S13: -0.2799 REMARK 3 S21: 0.5164 S22: 0.0570 S23: 0.2622 REMARK 3 S31: 0.7005 S32: 0.0758 S33: 0.1487 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0614 -10.8078 -15.4307 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.1445 REMARK 3 T33: 0.1187 T12: -0.0023 REMARK 3 T13: 0.0209 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.3351 L22: 1.6572 REMARK 3 L33: 3.5012 L12: 0.3260 REMARK 3 L13: 1.1039 L23: -0.3745 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: 0.1191 S13: 0.1995 REMARK 3 S21: 0.0407 S22: -0.0222 S23: 0.0488 REMARK 3 S31: -0.1480 S32: 0.2125 S33: 0.1596 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NFL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.62500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.32500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.31250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.93750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.31250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.93750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 186 REMARK 465 GLU A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 GLU A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 342 O HOH A 501 2.05 REMARK 500 O2 EDO A 405 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 250 OH TYR A 338 6444 2.02 REMARK 500 O HOH A 530 O HOH A 577 6444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 212 -58.83 -126.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L60 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 71O A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 DBREF 6NFL A 187 378 UNP Q9UH17 ABC3B_HUMAN 187 378 SEQADV 6NFL MET A 186 UNP Q9UH17 INITIATING METHIONINE SEQADV 6NFL SER A 200 UNP Q9UH17 PHE 200 ENGINEERED MUTATION SEQADV 6NFL SER A 228 UNP Q9UH17 TRP 228 ENGINEERED MUTATION SEQADV 6NFL LYS A 230 UNP Q9UH17 LEU 230 ENGINEERED MUTATION SEQADV 6NFL SER A 250 UNP Q9UH17 ALA 242 ENGINEERED MUTATION SEQADV 6NFL A UNP Q9UH17 LYS 243 DELETION SEQADV 6NFL A UNP Q9UH17 ASN 244 DELETION SEQADV 6NFL A UNP Q9UH17 LEU 245 DELETION SEQADV 6NFL A UNP Q9UH17 LEU 246 DELETION SEQADV 6NFL A UNP Q9UH17 CYS 247 DELETION SEQADV 6NFL A UNP Q9UH17 GLY 248 DELETION SEQADV 6NFL A UNP Q9UH17 PHE 249 DELETION SEQADV 6NFL A UNP Q9UH17 TYR 250 DELETION SEQADV 6NFL LYS A 308 UNP Q9UH17 PHE 308 ENGINEERED MUTATION SEQADV 6NFL ASP A 315 UNP Q9UH17 TYR 315 ENGINEERED MUTATION SEQADV 6NFL GLN A 316 UNP Q9UH17 ASP 316 ENGINEERED MUTATION SEQADV 6NFL GLY A 317 UNP Q9UH17 PRO 317 ENGINEERED MUTATION SEQADV 6NFL ARG A 318 UNP Q9UH17 LEU 318 ENGINEERED MUTATION SEQADV 6NFL CYS A 319 UNP Q9UH17 TYR 319 ENGINEERED MUTATION SEQADV 6NFL GLN A 320 UNP Q9UH17 LYS 320 ENGINEERED MUTATION SEQADV 6NFL LEU A 379 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL GLU A 380 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL HIS A 381 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL HIS A 382 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL HIS A 383 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL HIS A 384 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL HIS A 385 UNP Q9UH17 EXPRESSION TAG SEQADV 6NFL HIS A 386 UNP Q9UH17 EXPRESSION TAG SEQRES 1 A 193 MET GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 193 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 193 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 193 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 193 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 193 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 193 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 193 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 193 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 193 ARG ILE TYR ASP ASP GLN GLY ARG CYS GLN GLU ALA LEU SEQRES 11 A 193 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 193 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 193 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 193 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 193 ILE LEU GLN LEU GLU HIS HIS HIS HIS HIS HIS HET L60 A 401 11 HET 71O A 402 11 HET CL A 403 1 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HETNAM L60 1,3-DIAZINAN-2-ONE HETNAM 71O PYRIMIDIN-2-OL HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 L60 C4 H8 N2 O FORMUL 3 71O C4 H4 N2 O FORMUL 4 CL CL 1- FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *134(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 HIS A 253 GLN A 266 1 14 HELIX 3 AA3 GLY A 288 ASN A 300 1 13 HELIX 4 AA4 GLY A 317 ALA A 329 1 13 HELIX 5 AA5 THR A 337 VAL A 349 1 13 HELIX 6 AA6 GLY A 361 GLN A 378 1 18 SHEET 1 AA1 5 THR A 227 CYS A 239 0 SHEET 2 AA1 5 TYR A 215 ASP A 224 -1 N ARG A 222 O VAL A 229 SHEET 3 AA1 5 TYR A 273 ILE A 279 -1 O PHE A 278 N CYS A 217 SHEET 4 AA1 5 VAL A 303 ALA A 309 1 O LYS A 308 N TRP A 277 SHEET 5 AA1 5 GLN A 332 ILE A 335 1 O GLN A 332 N ILE A 307 SSBOND 1 CYS A 284 CYS A 289 1555 1555 2.80 SITE 1 AC1 9 ARG A 210 ARG A 211 GLN A 213 THR A 214 SITE 2 AC1 9 ASN A 240 HIS A 253 TRP A 281 PHE A 285 SITE 3 AC1 9 HOH A 555 SITE 1 AC2 4 GLU A 219 ARG A 306 GLU A 340 TYR A 343 SITE 1 AC3 4 SER A 334 ILE A 335 SER A 370 ARG A 374 SITE 1 AC4 5 ARG A 212 ASN A 240 SER A 250 GLY A 251 SITE 2 AC4 5 GLU A 342 SITE 1 AC5 6 PHE A 237 GLU A 241 THR A 337 HOH A 502 SITE 2 AC5 6 HOH A 569 HOH A 585 SITE 1 AC6 1 LEU A 379 CRYST1 50.650 50.650 149.250 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006700 0.00000