HEADER TRANSFERASE 21-DEC-18 6NFY TITLE CRYSTAL STRUCTURE OF NONPHOSPHORYLATED, HPK1 KINASE DOMAIN IN COMPLEX TITLE 2 WITH SUNITINIB IN THE INACTIVE STATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 5 KINASE 1,MEKKK 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP4K1, HPK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, 3D DOMAIN SWAP, ACTIVE STATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.JOHNSON,M.MCTIGUE,C.N.CRONIN REVDAT 5 13-MAR-24 6NFY 1 COMPND HETNAM REVDAT 4 26-JUN-19 6NFY 1 JRNL REVDAT 3 19-JUN-19 6NFY 1 JRNL REVDAT 2 08-MAY-19 6NFY 1 JRNL REVDAT 1 01-MAY-19 6NFY 0 JRNL AUTH E.JOHNSON,M.MCTIGUE,R.A.GALLEGO,T.W.JOHNSON,S.TIMOFEEVSKI, JRNL AUTH 2 M.MAESTRE,T.S.FISHER,R.KANIA,S.SAWASDIKOSOL,S.BURAKOFF, JRNL AUTH 3 C.N.CRONIN JRNL TITL MULTIPLE CONFORMATIONAL STATES OF THE HPK1 KINASE DOMAIN IN JRNL TITL 2 COMPLEX WITH SUNITINIB REVEAL THE STRUCTURAL CHANGES JRNL TITL 3 ACCOMPANYING HPK1 TRANS-REGULATION. JRNL REF J.BIOL.CHEM. V. 294 9029 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31018963 JRNL DOI 10.1074/JBC.AC119.007466 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2205 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3207 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2110 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3070 REMARK 3 BIN R VALUE (WORKING SET) : 0.2096 REMARK 3 BIN FREE R VALUE : 0.2405 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 137 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.16850 REMARK 3 B22 (A**2) : 4.16850 REMARK 3 B33 (A**2) : -8.33700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.189 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.158 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.345 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.156 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9268 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 16833 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2152 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 96 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1319 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9268 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 580 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 10150 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000236782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46182 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 107.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 NL PROTEIN (16 MG/ML) PLUS 300 NL REMARK 280 RESERVOIR SOLUTION (4.19 M NACL, 0.1 M HEPES, PH 6.5) AND REMARK 280 INCUBATED AT 25 C, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 82.95400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.89351 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.52767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 82.95400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 47.89351 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.52767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 82.95400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 47.89351 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.52767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 82.95400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 47.89351 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.52767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 82.95400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 47.89351 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.52767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 82.95400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 47.89351 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.52767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 95.78703 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 109.05533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 95.78703 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 109.05533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 95.78703 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 109.05533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 95.78703 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.05533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 95.78703 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 109.05533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 95.78703 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 109.05533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A9244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 TYR A 28 REMARK 465 ASN A 293 REMARK 465 PRO A 294 REMARK 465 GLY A 295 REMARK 465 LYS A 296 REMARK 465 GLY A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 ILE A 300 REMARK 465 GLY A 301 REMARK 465 ASP A 302 REMARK 465 ILE A 303 REMARK 465 GLU A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 ASN B 293 REMARK 465 PRO B 294 REMARK 465 GLY B 295 REMARK 465 LYS B 296 REMARK 465 GLY B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 ILE B 300 REMARK 465 GLY B 301 REMARK 465 ASP B 302 REMARK 465 ILE B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 GLU B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 136 -5.66 80.53 REMARK 500 ASP A 137 55.20 -152.05 REMARK 500 LEU A 255 37.18 -92.31 REMARK 500 LEU B 20 -159.13 -122.05 REMARK 500 ARG B 136 -9.22 78.28 REMARK 500 ASP B 137 57.15 -144.42 REMARK 500 SER B 159 135.50 -39.67 REMARK 500 ALA B 167 53.70 -93.57 REMARK 500 LEU B 255 43.02 -97.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B9270 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH B9271 DISTANCE = 10.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B49 A 9000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B49 B 9000 DBREF 6NFY A 10 307 UNP Q92918 M4K1_HUMAN 10 307 DBREF 6NFY B 10 307 UNP Q92918 M4K1_HUMAN 10 307 SEQADV 6NFY GLY A 8 UNP Q92918 EXPRESSION TAG SEQADV 6NFY SER A 9 UNP Q92918 EXPRESSION TAG SEQADV 6NFY GLY B 8 UNP Q92918 EXPRESSION TAG SEQADV 6NFY SER B 9 UNP Q92918 EXPRESSION TAG SEQRES 1 A 300 GLY SER ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU LEU SEQRES 2 A 300 GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE LYS SEQRES 3 A 300 ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU LYS SEQRES 4 A 300 MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR LEU SEQRES 5 A 300 GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS ALA SEQRES 6 A 300 ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU GLN SEQRES 7 A 300 LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SER SEQRES 8 A 300 LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER GLU SEQRES 9 A 300 LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN GLY SEQRES 10 A 300 LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG ASP SEQRES 11 A 300 ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY GLU SEQRES 12 A 300 VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE GLY SEQRES 13 A 300 ALA THR LEU ALA ARG ARG LEU SER PHE ILE GLY THR PRO SEQRES 14 A 300 TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU LYS SEQRES 15 A 300 GLY GLY TYR ASN GLU LEU CYS ASP ILE TRP SER LEU GLY SEQRES 16 A 300 ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO LEU SEQRES 17 A 300 PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET THR SEQRES 18 A 300 LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS GLY SEQRES 19 A 300 LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL THR SEQRES 20 A 300 LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR LYS SEQRES 21 A 300 MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU ASN SEQRES 22 A 300 ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS ASN SEQRES 23 A 300 PRO GLY LYS GLY PRO SER ILE GLY ASP ILE GLU ASP GLU SEQRES 24 A 300 GLU SEQRES 1 B 300 GLY SER ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU LEU SEQRES 2 B 300 GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE LYS SEQRES 3 B 300 ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU LYS SEQRES 4 B 300 MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR LEU SEQRES 5 B 300 GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS ALA SEQRES 6 B 300 ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU GLN SEQRES 7 B 300 LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SER SEQRES 8 B 300 LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER GLU SEQRES 9 B 300 LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN GLY SEQRES 10 B 300 LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG ASP SEQRES 11 B 300 ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY GLU SEQRES 12 B 300 VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE GLY SEQRES 13 B 300 ALA THR LEU ALA ARG ARG LEU SER PHE ILE GLY THR PRO SEQRES 14 B 300 TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU LYS SEQRES 15 B 300 GLY GLY TYR ASN GLU LEU CYS ASP ILE TRP SER LEU GLY SEQRES 16 B 300 ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO LEU SEQRES 17 B 300 PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET THR SEQRES 18 B 300 LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS GLY SEQRES 19 B 300 LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL THR SEQRES 20 B 300 LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR LYS SEQRES 21 B 300 MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU ASN SEQRES 22 B 300 ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS ASN SEQRES 23 B 300 PRO GLY LYS GLY PRO SER ILE GLY ASP ILE GLU ASP GLU SEQRES 24 B 300 GLU HET B49 A9000 29 HET B49 B9000 29 HETNAM B49 N-[2-(DIETHYLAMINO)ETHYL]-5-[(Z)-(5-FLUORO-2-OXO-1,2- HETNAM 2 B49 DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-2,4-DIMETHYL-1H- HETNAM 3 B49 PYRROLE-3-CARBO XAMIDE HETSYN B49 SUNITINIB FORMUL 3 B49 2(C22 H27 F N4 O2) FORMUL 5 HOH *412(H2 O) HELIX 1 AA1 ASP A 12 ASP A 15 5 4 HELIX 2 AA2 ASP A 55 CYS A 69 1 15 HELIX 3 AA3 LEU A 99 GLY A 107 1 9 HELIX 4 AA4 SER A 110 GLN A 131 1 22 HELIX 5 AA5 LYS A 139 ALA A 141 5 3 HELIX 6 AA6 THR A 175 MET A 179 5 5 HELIX 7 AA7 ALA A 180 ALA A 185 1 6 HELIX 8 AA8 VAL A 186 LEU A 188 5 3 HELIX 9 AA9 LEU A 195 LEU A 211 1 17 HELIX 10 AB1 HIS A 219 LYS A 229 1 11 HELIX 11 AB2 GLU A 239 TRP A 243 5 5 HELIX 12 AB3 SER A 244 LEU A 255 1 12 HELIX 13 AB4 SER A 258 ARG A 262 5 5 HELIX 14 AB5 SER A 264 LEU A 269 1 6 HELIX 15 AB6 HIS A 271 GLN A 276 1 6 HELIX 16 AB7 ARG A 281 LYS A 290 1 10 HELIX 17 AB8 ASP B 12 ASP B 15 5 4 HELIX 18 AB9 ASP B 55 CYS B 69 1 15 HELIX 19 AC1 SER B 98 GLY B 107 1 10 HELIX 20 AC2 SER B 110 GLN B 131 1 22 HELIX 21 AC3 LYS B 139 ALA B 141 5 3 HELIX 22 AC4 THR B 175 MET B 179 5 5 HELIX 23 AC5 ALA B 180 VAL B 186 1 7 HELIX 24 AC6 LEU B 195 GLU B 210 1 16 HELIX 25 AC7 HIS B 219 THR B 228 1 10 HELIX 26 AC8 SER B 244 LEU B 255 1 12 HELIX 27 AC9 SER B 264 LEU B 269 1 6 HELIX 28 AD1 HIS B 271 GLN B 276 1 6 HELIX 29 AD2 ARG B 281 LYS B 290 1 10 SHEET 1 AA1 5 TYR A 17 ARG A 22 0 SHEET 2 AA1 5 GLU A 30 ASP A 36 -1 O ARG A 35 N ASP A 18 SHEET 3 AA1 5 LEU A 42 LYS A 49 -1 O MET A 47 N GLU A 30 SHEET 4 AA1 5 LYS A 86 GLU A 92 -1 O LEU A 87 N VAL A 48 SHEET 5 AA1 5 TYR A 77 TRP A 83 -1 N TYR A 81 O TRP A 88 SHEET 1 AA2 3 GLY A 97 SER A 98 0 SHEET 2 AA2 3 ILE A 143 ILE A 145 -1 O ILE A 145 N GLY A 97 SHEET 3 AA2 3 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA3 2 LYS A 133 ILE A 134 0 SHEET 2 AA3 2 ILE A 158 SER A 159 -1 O ILE A 158 N ILE A 134 SHEET 1 AA4 2 SER A 171 ILE A 173 0 SHEET 2 AA4 2 SER B 171 ILE B 173 -1 O SER B 171 N ILE A 173 SHEET 1 AA5 5 TYR B 17 GLY B 26 0 SHEET 2 AA5 5 GLY B 29 ASP B 36 -1 O LYS B 33 N GLN B 21 SHEET 3 AA5 5 LEU B 42 LYS B 49 -1 O MET B 47 N GLU B 30 SHEET 4 AA5 5 LYS B 86 GLU B 92 -1 O LEU B 87 N VAL B 48 SHEET 5 AA5 5 TYR B 77 TRP B 83 -1 N TYR B 81 O TRP B 88 SHEET 1 AA6 2 LYS B 133 ILE B 134 0 SHEET 2 AA6 2 ILE B 158 SER B 159 -1 O ILE B 158 N ILE B 134 SHEET 1 AA7 2 ILE B 143 ILE B 145 0 SHEET 2 AA7 2 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 SITE 1 AC1 12 LEU A 23 ALA A 44 LYS A 46 GLU A 92 SITE 2 AC1 12 PHE A 93 CYS A 94 GLY A 95 GLY A 97 SITE 3 AC1 12 ASP A 101 LEU A 144 ALA A 154 ALA B 167 SITE 1 AC2 14 ALA A 167 LEU B 23 ALA B 44 LYS B 46 SITE 2 AC2 14 MET B 91 GLU B 92 PHE B 93 CYS B 94 SITE 3 AC2 14 GLY B 95 ALA B 96 GLY B 97 ASP B 101 SITE 4 AC2 14 LEU B 144 ALA B 154 CRYST1 165.908 165.908 163.583 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006027 0.003480 0.000000 0.00000 SCALE2 0.000000 0.006960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006113 0.00000