HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 21-DEC-18 6NGK TITLE STRUCTURE OF RAT NEURONAL NITRIC OXIDE SYNTHASE HEME DOMAIN IN COMPLEX TITLE 2 WITH 6-(3-(3-(DIMETHYLAMINO)PROP-1-YN-1-YL)-5-FLUOROPHENETHYL)-4- TITLE 3 METHYLPYRIDIN-2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE, BRAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BNOS,CONSTITUTIVE NOS,NC-NOS,NOS TYPE I,NEURONAL NOS,NNOS, COMPND 5 PEPTIDYL-CYSTEINE S-NITROSYLASE NOS1; COMPND 6 EC: 1.14.13.39; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: BRAIN; SOURCE 6 GENE: NOS1, BNOS; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASIMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCWORI KEYWDS NITRIC OXIDE SYNTHASE INHIBITOR COMPLEX HEME ENZYME, OXIDOREDUCTASE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,T.L.POULOS REVDAT 4 11-OCT-23 6NGK 1 LINK REVDAT 3 04-DEC-19 6NGK 1 REMARK REVDAT 2 27-MAR-19 6NGK 1 JRNL REVDAT 1 13-MAR-19 6NGK 0 JRNL AUTH H.T.DO,H.LI,G.CHREIFI,T.L.POULOS,R.B.SILVERMAN JRNL TITL OPTIMIZATION OF BLOOD-BRAIN BARRIER PERMEABILITY WITH POTENT JRNL TITL 2 AND SELECTIVE HUMAN NEURONAL NITRIC OXIDE SYNTHASE JRNL TITL 3 INHIBITORS HAVING A 2-AMINOPYRIDINE SCAFFOLD. JRNL REF J. MED. CHEM. V. 62 2690 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30802056 JRNL DOI 10.1021/ACS.JMEDCHEM.8B02032 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1-2575_1496: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 82731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 7792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.9999 - 5.6839 1.00 5086 252 0.1575 0.1560 REMARK 3 2 5.6839 - 4.5118 1.00 5068 310 0.1373 0.1798 REMARK 3 3 4.5118 - 3.9416 1.00 5075 275 0.1367 0.1608 REMARK 3 4 3.9416 - 3.5812 1.00 5091 279 0.1456 0.1961 REMARK 3 5 3.5812 - 3.3245 1.00 5098 264 0.1604 0.1770 REMARK 3 6 3.3245 - 3.1285 1.00 5111 245 0.1768 0.2245 REMARK 3 7 3.1285 - 2.9719 1.00 5069 290 0.1958 0.2338 REMARK 3 8 2.9719 - 2.8425 1.00 5044 284 0.1939 0.2373 REMARK 3 9 2.8425 - 2.7331 1.00 5102 246 0.1984 0.2602 REMARK 3 10 2.7331 - 2.6387 1.00 5154 269 0.2066 0.2613 REMARK 3 11 2.6387 - 2.5562 1.00 5011 255 0.2056 0.2388 REMARK 3 12 2.5562 - 2.4832 1.00 5093 262 0.2037 0.2808 REMARK 3 13 2.4832 - 2.4178 1.00 5147 243 0.2288 0.2838 REMARK 3 14 2.4178 - 2.3588 1.00 5052 265 0.2260 0.3220 REMARK 3 15 2.3588 - 2.3052 0.99 5093 266 0.2261 0.2495 REMARK 3 16 2.3052 - 2.2561 1.00 5017 318 0.2371 0.3118 REMARK 3 17 2.2561 - 2.2110 0.99 5112 272 0.2626 0.3078 REMARK 3 18 2.2110 - 2.1693 0.99 4979 262 0.2586 0.3530 REMARK 3 19 2.1693 - 2.1305 1.00 5170 225 0.2672 0.3481 REMARK 3 20 2.1305 - 2.0944 0.99 5137 213 0.2822 0.3444 REMARK 3 21 2.0944 - 2.0606 1.00 5030 278 0.2913 0.3483 REMARK 3 22 2.0606 - 2.0289 0.99 5091 273 0.2987 0.3677 REMARK 3 23 2.0289 - 1.9991 0.99 5066 230 0.3040 0.3119 REMARK 3 24 1.9991 - 1.9709 0.99 5046 275 0.3191 0.3746 REMARK 3 25 1.9709 - 1.9443 0.98 4980 291 0.3235 0.3852 REMARK 3 26 1.9443 - 1.9190 0.97 4883 265 0.3290 0.3358 REMARK 3 27 1.9190 - 1.8950 0.92 4710 230 0.3421 0.3647 REMARK 3 28 1.8950 - 1.8722 0.89 4630 201 0.3403 0.3934 REMARK 3 29 1.8722 - 1.8504 0.88 4401 227 0.3535 0.4287 REMARK 3 30 1.8504 - 1.8296 0.83 4197 227 0.3580 0.3889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7165 REMARK 3 ANGLE : 0.972 9748 REMARK 3 CHIRALITY : 0.049 1008 REMARK 3 PLANARITY : 0.006 1232 REMARK 3 DIHEDRAL : 17.421 4179 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 299:716) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2434 4.8450 22.5030 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.2521 REMARK 3 T33: 0.2988 T12: 0.0099 REMARK 3 T13: 0.0116 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.0164 L22: 1.6018 REMARK 3 L33: 9.0776 L12: -0.1013 REMARK 3 L13: -0.4075 L23: 0.0135 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: 0.1433 S13: -0.0043 REMARK 3 S21: 0.0561 S22: -0.0960 S23: 0.0794 REMARK 3 S31: 0.1090 S32: -0.5420 S33: 0.0686 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 299:718) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2472 5.0204 59.5827 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.2336 REMARK 3 T33: 0.2945 T12: 0.0183 REMARK 3 T13: 0.0397 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.9033 L22: 1.4681 REMARK 3 L33: 4.5729 L12: -0.1293 REMARK 3 L13: -0.1919 L23: 0.4013 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.0042 S13: 0.0720 REMARK 3 S21: -0.1531 S22: -0.0897 S23: -0.0489 REMARK 3 S31: 0.1436 S32: 0.0677 S33: 0.0545 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000236833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 66.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : 0.18700 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 5.07300 REMARK 200 R SYM FOR SHELL (I) : 5.07300 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1OM4 REMARK 200 REMARK 200 REMARK: BRICKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-24% PEG3350, 0.1M MES 0.14-0.20M REMARK 280 AMMONIUM ACETATE, 10% ETHYLENE GLYCOL, 30UM SDS, 5 MM GSH, PH REMARK 280 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.81750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.81750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 297 REMARK 465 PRO A 298 REMARK 465 LYS A 344 REMARK 465 PRO A 345 REMARK 465 GLU A 346 REMARK 465 ASP A 347 REMARK 465 VAL A 348 REMARK 465 ARG A 349 REMARK 465 LYS A 717 REMARK 465 GLY A 718 REMARK 465 CYS B 297 REMARK 465 PRO B 298 REMARK 465 LYS B 344 REMARK 465 PRO B 345 REMARK 465 GLU B 346 REMARK 465 ASP B 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 706 O2D HEM B 801 2.04 REMARK 500 NE2 GLN B 364 O HOH B 901 2.12 REMARK 500 OH TYR A 706 O2D HEM A 801 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 321 -61.38 -100.05 REMARK 500 THR A 466 -73.76 -113.47 REMARK 500 SER A 491 -154.57 -77.18 REMARK 500 ARG A 514 55.05 15.88 REMARK 500 LYS A 550 -60.62 -129.72 REMARK 500 CYS A 582 56.41 -152.21 REMARK 500 ARG A 603 -134.95 -126.58 REMARK 500 SER B 392 -1.63 73.03 REMARK 500 LYS B 423 65.28 -112.02 REMARK 500 THR B 466 -82.18 -115.79 REMARK 500 CYS B 582 56.65 -150.00 REMARK 500 ARG B 603 -138.86 -122.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1092 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1155 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B1156 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 805 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 326 SG REMARK 620 2 CYS A 331 SG 116.0 REMARK 620 3 CYS B 326 SG 117.6 106.1 REMARK 620 4 CYS B 331 SG 100.8 101.0 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 415 SG REMARK 620 2 HEM A 801 NA 102.1 REMARK 620 3 HEM A 801 NB 101.6 88.9 REMARK 620 4 HEM A 801 NC 99.8 158.0 86.2 REMARK 620 5 HEM A 801 ND 103.6 86.2 154.8 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 415 SG REMARK 620 2 HEM B 801 NA 101.8 REMARK 620 3 HEM B 801 NB 102.4 86.9 REMARK 620 4 HEM B 801 NC 98.9 159.2 90.6 REMARK 620 5 HEM B 801 ND 102.2 87.2 155.4 86.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H4B A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KM7 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H4B B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KM7 B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 804 DBREF 6NGK A 297 718 UNP P29476 NOS1_RAT 297 718 DBREF 6NGK B 297 718 UNP P29476 NOS1_RAT 297 718 SEQRES 1 A 422 CYS PRO ARG PHE LEU LYS VAL LYS ASN TRP GLU THR ASP SEQRES 2 A 422 VAL VAL LEU THR ASP THR LEU HIS LEU LYS SER THR LEU SEQRES 3 A 422 GLU THR GLY CYS THR GLU HIS ILE CYS MET GLY SER ILE SEQRES 4 A 422 MET LEU PRO SER GLN HIS THR ARG LYS PRO GLU ASP VAL SEQRES 5 A 422 ARG THR LYS ASP GLN LEU PHE PRO LEU ALA LYS GLU PHE SEQRES 6 A 422 LEU ASP GLN TYR TYR SER SER ILE LYS ARG PHE GLY SER SEQRES 7 A 422 LYS ALA HIS MET ASP ARG LEU GLU GLU VAL ASN LYS GLU SEQRES 8 A 422 ILE GLU SER THR SER THR TYR GLN LEU LYS ASP THR GLU SEQRES 9 A 422 LEU ILE TYR GLY ALA LYS HIS ALA TRP ARG ASN ALA SER SEQRES 10 A 422 ARG CYS VAL GLY ARG ILE GLN TRP SER LYS LEU GLN VAL SEQRES 11 A 422 PHE ASP ALA ARG ASP CYS THR THR ALA HIS GLY MET PHE SEQRES 12 A 422 ASN TYR ILE CYS ASN HIS VAL LYS TYR ALA THR ASN LYS SEQRES 13 A 422 GLY ASN LEU ARG SER ALA ILE THR ILE PHE PRO GLN ARG SEQRES 14 A 422 THR ASP GLY LYS HIS ASP PHE ARG VAL TRP ASN SER GLN SEQRES 15 A 422 LEU ILE ARG TYR ALA GLY TYR LYS GLN PRO ASP GLY SER SEQRES 16 A 422 THR LEU GLY ASP PRO ALA ASN VAL GLN PHE THR GLU ILE SEQRES 17 A 422 CYS ILE GLN GLN GLY TRP LYS ALA PRO ARG GLY ARG PHE SEQRES 18 A 422 ASP VAL LEU PRO LEU LEU LEU GLN ALA ASN GLY ASN ASP SEQRES 19 A 422 PRO GLU LEU PHE GLN ILE PRO PRO GLU LEU VAL LEU GLU SEQRES 20 A 422 VAL PRO ILE ARG HIS PRO LYS PHE ASP TRP PHE LYS ASP SEQRES 21 A 422 LEU GLY LEU LYS TRP TYR GLY LEU PRO ALA VAL SER ASN SEQRES 22 A 422 MET LEU LEU GLU ILE GLY GLY LEU GLU PHE SER ALA CYS SEQRES 23 A 422 PRO PHE SER GLY TRP TYR MET GLY THR GLU ILE GLY VAL SEQRES 24 A 422 ARG ASP TYR CYS ASP ASN SER ARG TYR ASN ILE LEU GLU SEQRES 25 A 422 GLU VAL ALA LYS LYS MET ASP LEU ASP MET ARG LYS THR SEQRES 26 A 422 SER SER LEU TRP LYS ASP GLN ALA LEU VAL GLU ILE ASN SEQRES 27 A 422 ILE ALA VAL LEU TYR SER PHE GLN SER ASP LYS VAL THR SEQRES 28 A 422 ILE VAL ASP HIS HIS SER ALA THR GLU SER PHE ILE LYS SEQRES 29 A 422 HIS MET GLU ASN GLU TYR ARG CYS ARG GLY GLY CYS PRO SEQRES 30 A 422 ALA ASP TRP VAL TRP ILE VAL PRO PRO MET SER GLY SER SEQRES 31 A 422 ILE THR PRO VAL PHE HIS GLN GLU MET LEU ASN TYR ARG SEQRES 32 A 422 LEU THR PRO SER PHE GLU TYR GLN PRO ASP PRO TRP ASN SEQRES 33 A 422 THR HIS VAL TRP LYS GLY SEQRES 1 B 422 CYS PRO ARG PHE LEU LYS VAL LYS ASN TRP GLU THR ASP SEQRES 2 B 422 VAL VAL LEU THR ASP THR LEU HIS LEU LYS SER THR LEU SEQRES 3 B 422 GLU THR GLY CYS THR GLU HIS ILE CYS MET GLY SER ILE SEQRES 4 B 422 MET LEU PRO SER GLN HIS THR ARG LYS PRO GLU ASP VAL SEQRES 5 B 422 ARG THR LYS ASP GLN LEU PHE PRO LEU ALA LYS GLU PHE SEQRES 6 B 422 LEU ASP GLN TYR TYR SER SER ILE LYS ARG PHE GLY SER SEQRES 7 B 422 LYS ALA HIS MET ASP ARG LEU GLU GLU VAL ASN LYS GLU SEQRES 8 B 422 ILE GLU SER THR SER THR TYR GLN LEU LYS ASP THR GLU SEQRES 9 B 422 LEU ILE TYR GLY ALA LYS HIS ALA TRP ARG ASN ALA SER SEQRES 10 B 422 ARG CYS VAL GLY ARG ILE GLN TRP SER LYS LEU GLN VAL SEQRES 11 B 422 PHE ASP ALA ARG ASP CYS THR THR ALA HIS GLY MET PHE SEQRES 12 B 422 ASN TYR ILE CYS ASN HIS VAL LYS TYR ALA THR ASN LYS SEQRES 13 B 422 GLY ASN LEU ARG SER ALA ILE THR ILE PHE PRO GLN ARG SEQRES 14 B 422 THR ASP GLY LYS HIS ASP PHE ARG VAL TRP ASN SER GLN SEQRES 15 B 422 LEU ILE ARG TYR ALA GLY TYR LYS GLN PRO ASP GLY SER SEQRES 16 B 422 THR LEU GLY ASP PRO ALA ASN VAL GLN PHE THR GLU ILE SEQRES 17 B 422 CYS ILE GLN GLN GLY TRP LYS ALA PRO ARG GLY ARG PHE SEQRES 18 B 422 ASP VAL LEU PRO LEU LEU LEU GLN ALA ASN GLY ASN ASP SEQRES 19 B 422 PRO GLU LEU PHE GLN ILE PRO PRO GLU LEU VAL LEU GLU SEQRES 20 B 422 VAL PRO ILE ARG HIS PRO LYS PHE ASP TRP PHE LYS ASP SEQRES 21 B 422 LEU GLY LEU LYS TRP TYR GLY LEU PRO ALA VAL SER ASN SEQRES 22 B 422 MET LEU LEU GLU ILE GLY GLY LEU GLU PHE SER ALA CYS SEQRES 23 B 422 PRO PHE SER GLY TRP TYR MET GLY THR GLU ILE GLY VAL SEQRES 24 B 422 ARG ASP TYR CYS ASP ASN SER ARG TYR ASN ILE LEU GLU SEQRES 25 B 422 GLU VAL ALA LYS LYS MET ASP LEU ASP MET ARG LYS THR SEQRES 26 B 422 SER SER LEU TRP LYS ASP GLN ALA LEU VAL GLU ILE ASN SEQRES 27 B 422 ILE ALA VAL LEU TYR SER PHE GLN SER ASP LYS VAL THR SEQRES 28 B 422 ILE VAL ASP HIS HIS SER ALA THR GLU SER PHE ILE LYS SEQRES 29 B 422 HIS MET GLU ASN GLU TYR ARG CYS ARG GLY GLY CYS PRO SEQRES 30 B 422 ALA ASP TRP VAL TRP ILE VAL PRO PRO MET SER GLY SER SEQRES 31 B 422 ILE THR PRO VAL PHE HIS GLN GLU MET LEU ASN TYR ARG SEQRES 32 B 422 LEU THR PRO SER PHE GLU TYR GLN PRO ASP PRO TRP ASN SEQRES 33 B 422 THR HIS VAL TRP LYS GLY HET HEM A 801 43 HET H4B A 802 17 HET KM7 A 803 23 HET ACT A 804 4 HET ZN A 805 1 HET HEM B 801 43 HET H4B B 802 17 HET KM7 B 803 23 HET ACT B 804 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM H4B 5,6,7,8-TETRAHYDROBIOPTERIN HETNAM KM7 6-(2-{3-[3-(DIMETHYLAMINO)PROP-1-YN-1-YL]-5- HETNAM 2 KM7 FLUOROPHENYL}ETHYL)-4-METHYLPYRIDIN-2-AMINE HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 H4B 2(C9 H15 N5 O3) FORMUL 5 KM7 2(C19 H22 F N3) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 ZN ZN 2+ FORMUL 12 HOH *448(H2 O) HELIX 1 AA1 THR A 315 SER A 320 5 6 HELIX 2 AA2 LYS A 351 ILE A 369 1 19 HELIX 3 AA3 SER A 374 SER A 392 1 19 HELIX 4 AA4 LYS A 397 ASN A 411 1 15 HELIX 5 AA5 GLY A 417 LEU A 424 5 8 HELIX 6 AA6 THR A 434 ASN A 451 1 18 HELIX 7 AA7 LYS A 452 ASN A 454 5 3 HELIX 8 AA8 ASN A 498 GLY A 509 1 12 HELIX 9 AA9 PRO A 537 VAL A 541 5 5 HELIX 10 AB1 PHE A 551 GLY A 558 5 8 HELIX 11 AB2 GLY A 590 VAL A 595 1 6 HELIX 12 AB3 VAL A 595 ASP A 600 1 6 HELIX 13 AB4 ILE A 606 ASP A 615 1 10 HELIX 14 AB5 LYS A 620 SER A 623 5 4 HELIX 15 AB6 LEU A 624 ASP A 644 1 21 HELIX 16 AB7 ASP A 650 GLY A 670 1 21 HELIX 17 AB8 ASP A 675 VAL A 680 1 6 HELIX 18 AB9 SER A 684 GLN A 693 5 10 HELIX 19 AC1 ASP A 709 HIS A 714 1 6 HELIX 20 AC2 THR B 315 SER B 320 5 6 HELIX 21 AC3 PRO B 338 THR B 342 5 5 HELIX 22 AC4 THR B 350 ILE B 369 1 20 HELIX 23 AC5 SER B 374 SER B 392 1 19 HELIX 24 AC6 LYS B 397 ASN B 411 1 15 HELIX 25 AC7 GLY B 417 TRP B 421 5 5 HELIX 26 AC8 THR B 434 ASN B 451 1 18 HELIX 27 AC9 LYS B 452 ASN B 454 5 3 HELIX 28 AD1 ASN B 498 GLN B 508 1 11 HELIX 29 AD2 PRO B 537 VAL B 541 5 5 HELIX 30 AD3 PHE B 551 GLY B 558 5 8 HELIX 31 AD4 GLY B 590 VAL B 595 1 6 HELIX 32 AD5 VAL B 595 ASP B 600 1 6 HELIX 33 AD6 ILE B 606 ASP B 615 1 10 HELIX 34 AD7 LYS B 620 SER B 623 5 4 HELIX 35 AD8 LEU B 624 ASP B 644 1 21 HELIX 36 AD9 ASP B 650 GLY B 670 1 21 HELIX 37 AE1 ASP B 675 VAL B 680 1 6 HELIX 38 AE2 SER B 684 THR B 688 5 5 HELIX 39 AE3 ASP B 709 HIS B 714 1 6 SHEET 1 AA1 2 LEU A 301 LYS A 304 0 SHEET 2 AA1 2 VAL A 311 ASP A 314 -1 O ASP A 314 N LEU A 301 SHEET 1 AA2 4 GLN A 425 ASP A 428 0 SHEET 2 AA2 4 ALA A 458 ILE A 461 1 O ILE A 459 N PHE A 427 SHEET 3 AA2 4 PHE A 584 SER A 585 -1 O SER A 585 N ALA A 458 SHEET 4 AA2 4 ALA A 566 VAL A 567 -1 N VAL A 567 O PHE A 584 SHEET 1 AA3 3 ARG A 473 VAL A 474 0 SHEET 2 AA3 3 LEU A 522 GLN A 525 -1 O GLN A 525 N ARG A 473 SHEET 3 AA3 3 GLU A 532 PHE A 534 -1 O PHE A 534 N LEU A 522 SHEET 1 AA4 2 GLY A 484 LYS A 486 0 SHEET 2 AA4 2 THR A 492 GLY A 494 -1 O LEU A 493 N TYR A 485 SHEET 1 AA5 2 GLU A 543 PRO A 545 0 SHEET 2 AA5 2 LYS A 560 TYR A 562 -1 O TRP A 561 N VAL A 544 SHEET 1 AA6 3 LEU A 577 PHE A 579 0 SHEET 2 AA6 3 LEU A 571 ILE A 574 -1 N LEU A 572 O PHE A 579 SHEET 3 AA6 3 SER A 703 GLU A 705 -1 O SER A 703 N GLU A 573 SHEET 1 AA7 2 TYR A 588 MET A 589 0 SHEET 2 AA7 2 ILE A 648 VAL A 649 1 O VAL A 649 N TYR A 588 SHEET 1 AA8 2 LEU B 301 LYS B 304 0 SHEET 2 AA8 2 VAL B 311 ASP B 314 -1 O ASP B 314 N LEU B 301 SHEET 1 AA9 4 GLN B 425 ASP B 428 0 SHEET 2 AA9 4 ALA B 458 ILE B 461 1 O ILE B 459 N PHE B 427 SHEET 3 AA9 4 PHE B 584 SER B 585 -1 O SER B 585 N ALA B 458 SHEET 4 AA9 4 ALA B 566 VAL B 567 -1 N VAL B 567 O PHE B 584 SHEET 1 AB1 3 ARG B 473 VAL B 474 0 SHEET 2 AB1 3 LEU B 522 GLN B 525 -1 O GLN B 525 N ARG B 473 SHEET 3 AB1 3 GLU B 532 PHE B 534 -1 O PHE B 534 N LEU B 522 SHEET 1 AB2 2 GLY B 484 LYS B 486 0 SHEET 2 AB2 2 THR B 492 GLY B 494 -1 O LEU B 493 N TYR B 485 SHEET 1 AB3 2 GLU B 543 PRO B 545 0 SHEET 2 AB3 2 LYS B 560 TYR B 562 -1 O TRP B 561 N VAL B 544 SHEET 1 AB4 3 LEU B 577 PHE B 579 0 SHEET 2 AB4 3 LEU B 571 ILE B 574 -1 N LEU B 572 O PHE B 579 SHEET 3 AB4 3 SER B 703 GLU B 705 -1 O SER B 703 N GLU B 573 SHEET 1 AB5 2 TYR B 588 MET B 589 0 SHEET 2 AB5 2 ILE B 648 VAL B 649 1 O VAL B 649 N TYR B 588 LINK SG CYS A 326 ZN ZN A 805 1555 1555 2.35 LINK SG CYS A 331 ZN ZN A 805 1555 1555 2.36 LINK SG CYS A 415 FE HEM A 801 1555 1555 2.37 LINK ZN ZN A 805 SG CYS B 326 1555 1555 2.36 LINK ZN ZN A 805 SG CYS B 331 1555 1555 2.41 LINK SG CYS B 415 FE HEM B 801 1555 1555 2.34 CISPEP 1 THR A 701 PRO A 702 0 0.80 CISPEP 2 THR B 701 PRO B 702 0 -2.52 SITE 1 AC1 20 HIS A 341 TRP A 409 ARG A 414 CYS A 415 SITE 2 AC1 20 SER A 457 PHE A 584 SER A 585 TRP A 587 SITE 3 AC1 20 MET A 589 GLU A 592 TRP A 678 PHE A 704 SITE 4 AC1 20 TYR A 706 H4B A 802 KM7 A 803 ACT A 804 SITE 5 AC1 20 HOH A 913 HOH A 933 HOH A 970 HOH A 993 SITE 1 AC2 16 SER A 334 ARG A 596 VAL A 677 TRP A 678 SITE 2 AC2 16 HEM A 801 KM7 A 803 HOH A 910 HOH A 933 SITE 3 AC2 16 HOH A 936 HOH A 945 HOH A 986 TRP B 676 SITE 4 AC2 16 PHE B 691 HIS B 692 GLN B 693 GLU B 694 SITE 1 AC3 11 MET A 336 VAL A 567 MET A 570 PHE A 584 SITE 2 AC3 11 GLY A 586 TRP A 587 TYR A 588 GLU A 592 SITE 3 AC3 11 TYR A 706 HEM A 801 H4B A 802 SITE 1 AC4 3 GLY A 417 TRP A 587 HEM A 801 SITE 1 AC5 4 CYS A 326 CYS A 331 CYS B 326 CYS B 331 SITE 1 AC6 17 HIS B 341 TRP B 409 ALA B 412 ARG B 414 SITE 2 AC6 17 CYS B 415 PHE B 584 SER B 585 TRP B 587 SITE 3 AC6 17 MET B 589 GLU B 592 TRP B 678 PHE B 704 SITE 4 AC6 17 TYR B 706 H4B B 802 KM7 B 803 HOH B 903 SITE 5 AC6 17 HOH B 964 SITE 1 AC7 15 TRP A 676 PHE A 691 HIS A 692 GLN A 693 SITE 2 AC7 15 GLU A 694 SER B 334 MET B 336 ARG B 596 SITE 3 AC7 15 VAL B 677 TRP B 678 HEM B 801 HOH B 964 SITE 4 AC7 15 HOH B1033 HOH B1040 HOH B1074 SITE 1 AC8 11 MET B 336 VAL B 567 MET B 570 PHE B 584 SITE 2 AC8 11 GLY B 586 TRP B 587 GLU B 592 TRP B 678 SITE 3 AC8 11 TYR B 706 HEM B 801 HOH B1082 SITE 1 AC9 4 GLN B 420 TRP B 587 VAL B 649 HOH B 973 CRYST1 51.635 111.210 163.840 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006104 0.00000