HEADER VIRUS 01-JAN-19 6NIW TITLE CRYSTAL STRUCTURE OF P[6] ROTAVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE-SENSITIVE OUTER CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: VP8* DOMAIN, RESIDUES 48-206; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 10941; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROTAVIRUS, HOST RECEPTOR INTERACTION, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.XU,Y.LIU,L.LAKAMP,L.AHMED,X.JIANG,M.A.KENNEDY REVDAT 3 11-OCT-23 6NIW 1 REMARK REVDAT 2 08-APR-20 6NIW 1 JRNL REVDAT 1 08-JAN-20 6NIW 0 JRNL AUTH S.XU,L.U.AHMED,M.R.STUCKERT,K.R.MCGINNIS,Y.LIU,M.TAN, JRNL AUTH 2 P.HUANG,W.ZHONG,D.ZHAO,X.JIANG,M.A.KENNEDY JRNL TITL MOLECULAR BASIS OF P[II] MAJOR HUMAN ROTAVIRUS VP8* DOMAIN JRNL TITL 2 RECOGNITION OF HISTO-BLOOD GROUP ANTIGENS. JRNL REF PLOS PATHOG. V. 16 08386 2020 JRNL REFN ESSN 1553-7374 JRNL PMID 32208455 JRNL DOI 10.1371/JOURNAL.PPAT.1008386 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 82770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.455 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5342 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4634 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7279 ; 1.546 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10831 ; 1.382 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 8.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;36.879 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 868 ;12.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.693 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 713 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5915 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1118 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 158 1 REMARK 3 1 B 2 B 158 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 1291 ; 3.200 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 158 1 REMARK 3 1 C 2 C 158 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 A (A**2): 1291 ; 3.170 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 158 1 REMARK 3 1 D 3 D 158 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 3 A (A**2): 1283 ; 2.920 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 159 1 REMARK 3 1 C 1 C 159 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 4 B (A**2): 1302 ; 3.950 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 3 B 158 1 REMARK 3 1 D 3 D 158 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 5 B (A**2): 1283 ; 3.510 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 3 C 158 1 REMARK 3 1 D 3 D 158 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 6 C (A**2): 1283 ; 3.520 ; 0.870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 73.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VX8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM PH 7.5, 1.5 M REMARK 280 LITHIUM SULFATE MONOHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 VAL D 1 REMARK 465 LEU D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 314 O HOH C 322 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 238 O HOH C 330 1455 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 92 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 33.28 73.03 REMARK 500 THR A 24 -72.92 -102.60 REMARK 500 THR A 36 -60.47 -126.69 REMARK 500 PRO A 118 30.79 -95.28 REMARK 500 ASN A 129 68.64 -153.18 REMARK 500 THR B 24 -71.89 -103.47 REMARK 500 ASN B 25 25.34 -143.18 REMARK 500 THR B 36 -53.55 -132.90 REMARK 500 ASN B 129 53.78 -148.52 REMARK 500 THR C 24 -73.75 -100.25 REMARK 500 ASN C 25 20.31 -142.14 REMARK 500 THR C 36 -58.83 -122.66 REMARK 500 ASN C 129 55.42 -143.59 REMARK 500 THR D 24 -67.85 -96.46 REMARK 500 ASN D 25 26.75 -152.14 REMARK 500 THR D 36 -58.86 -121.81 REMARK 500 PRO D 118 34.47 -91.92 REMARK 500 ASN D 129 64.72 -152.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 71 -10.42 REMARK 500 GLN D 64 10.35 REMARK 500 ASP D 97 12.19 REMARK 500 ILE D 143 10.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 201 DBREF 6NIW A 1 159 UNP D2DXN5 D2DXN5_9REOV 48 206 DBREF 6NIW B 1 159 UNP D2DXN5 D2DXN5_9REOV 48 206 DBREF 6NIW C 1 159 UNP D2DXN5 D2DXN5_9REOV 48 206 DBREF 6NIW D 1 159 UNP D2DXN5 D2DXN5_9REOV 48 206 SEQRES 1 A 159 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 A 159 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 A 159 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 A 159 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 A 159 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 A 159 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 A 159 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 A 159 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 A 159 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 A 159 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 A 159 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 A 159 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 A 159 ASN THR GLY SEQRES 1 B 159 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 B 159 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 B 159 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 B 159 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 B 159 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 B 159 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 B 159 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 B 159 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 B 159 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 B 159 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 B 159 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 B 159 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 B 159 ASN THR GLY SEQRES 1 C 159 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 C 159 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 C 159 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 C 159 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 C 159 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 C 159 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 C 159 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 C 159 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 C 159 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 C 159 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 C 159 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 C 159 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 C 159 ASN THR GLY SEQRES 1 D 159 VAL LEU ASP GLY PRO TYR GLN PRO THR ASN PHE LYS PRO SEQRES 2 D 159 PRO ASN ASP TYR TRP ILE LEU LEU ASN PRO THR ASN GLN SEQRES 3 D 159 GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE TRP SEQRES 4 D 159 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 D 159 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 D 159 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE GLU SEQRES 7 D 159 MET PHE ARG SER ASN VAL SER ALA GLU PHE GLN HIS LYS SEQRES 8 D 159 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE MET SEQRES 9 D 159 LYS PHE TYR ASN SER VAL TRP THR PHE HIS GLY GLU THR SEQRES 10 D 159 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 D 159 SER GLU VAL GLU THR VAL ILE HIS VAL GLU PHE TYR ILE SEQRES 12 D 159 ILE PRO ARG SER GLN GLU SER LYS CYS SER GLU TYR ILE SEQRES 13 D 159 ASN THR GLY HET PEG B 201 7 HET PEG C 201 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 HOH *157(H2 O) HELIX 1 AA1 ASN A 129 VAL A 133 5 5 HELIX 2 AA2 GLN A 148 GLY A 159 1 12 HELIX 3 AA3 ASN B 129 VAL B 133 5 5 HELIX 4 AA4 GLN B 148 GLY B 159 1 12 HELIX 5 AA5 ASN C 129 VAL C 133 5 5 HELIX 6 AA6 GLN C 148 GLY C 159 1 12 HELIX 7 AA7 GLN D 148 GLY D 159 1 12 SHEET 1 AA111 ASP A 3 TYR A 6 0 SHEET 2 AA111 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA111 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA111 ALA A 101 PHE A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA111 SER A 109 GLU A 116 -1 O TRP A 111 N MET A 104 SHEET 6 AA111 GLN A 89 SER A 96 1 N THR A 95 O GLY A 115 SHEET 7 AA111 TRP A 74 ARG A 81 -1 N TRP A 74 O SER A 96 SHEET 8 AA111 TRP A 39 VAL A 45 -1 N ALA A 41 O MET A 79 SHEET 9 AA111 VAL A 28 THR A 33 -1 N GLY A 32 O VAL A 40 SHEET 10 AA111 GLU A 134 ILE A 137 -1 O VAL A 136 N GLU A 31 SHEET 11 AA111 THR A 9 PHE A 11 -1 N THR A 9 O ILE A 137 SHEET 1 AA2 6 ASP A 3 TYR A 6 0 SHEET 2 AA2 6 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA2 6 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA2 6 ALA A 101 PHE A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA2 6 SER A 109 GLU A 116 -1 O TRP A 111 N MET A 104 SHEET 6 AA2 6 THR A 121 SER A 126 -1 O SER A 125 N VAL A 110 SHEET 1 AA3 2 VAL A 49 LEU A 58 0 SHEET 2 AA3 2 GLU A 61 ASN A 69 -1 O LYS A 63 N TYR A 56 SHEET 1 AA411 ASP B 3 TYR B 6 0 SHEET 2 AA411 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA411 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA411 ALA B 101 PHE B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA411 SER B 109 GLU B 116 -1 O TRP B 111 N MET B 104 SHEET 6 AA411 GLN B 89 SER B 96 1 N THR B 95 O GLY B 115 SHEET 7 AA411 TRP B 74 ARG B 81 -1 N TRP B 74 O SER B 96 SHEET 8 AA411 TRP B 39 VAL B 45 -1 N VAL B 45 O LYS B 75 SHEET 9 AA411 VAL B 28 THR B 33 -1 N GLY B 32 O VAL B 40 SHEET 10 AA411 GLU B 134 ILE B 137 -1 O GLU B 134 N THR B 33 SHEET 11 AA411 THR B 9 PHE B 11 -1 N THR B 9 O ILE B 137 SHEET 1 AA5 6 ASP B 3 TYR B 6 0 SHEET 2 AA5 6 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA5 6 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA5 6 ALA B 101 PHE B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA5 6 SER B 109 GLU B 116 -1 O TRP B 111 N MET B 104 SHEET 6 AA5 6 THR B 121 SER B 126 -1 O THR B 121 N HIS B 114 SHEET 1 AA6 2 VAL B 49 LEU B 58 0 SHEET 2 AA6 2 GLU B 61 ASN B 69 -1 O LYS B 63 N TYR B 56 SHEET 1 AA711 ASP C 3 TYR C 6 0 SHEET 2 AA711 GLU C 140 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA711 TYR C 17 ASN C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA711 ALA C 101 PHE C 106 -1 O PHE C 103 N ILE C 19 SHEET 5 AA711 SER C 109 GLU C 116 -1 O TRP C 111 N MET C 104 SHEET 6 AA711 GLN C 89 SER C 96 1 N THR C 93 O GLY C 115 SHEET 7 AA711 TRP C 74 ARG C 81 -1 N PHE C 80 O GLN C 89 SHEET 8 AA711 TRP C 39 VAL C 45 -1 N VAL C 45 O LYS C 75 SHEET 9 AA711 VAL C 28 THR C 33 -1 N VAL C 29 O LEU C 42 SHEET 10 AA711 GLU C 134 ILE C 137 -1 O VAL C 136 N GLU C 31 SHEET 11 AA711 THR C 9 PHE C 11 -1 N THR C 9 O ILE C 137 SHEET 1 AA8 6 ASP C 3 TYR C 6 0 SHEET 2 AA8 6 GLU C 140 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA8 6 TYR C 17 ASN C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA8 6 ALA C 101 PHE C 106 -1 O PHE C 103 N ILE C 19 SHEET 5 AA8 6 SER C 109 GLU C 116 -1 O TRP C 111 N MET C 104 SHEET 6 AA8 6 THR C 121 SER C 126 -1 O SER C 125 N VAL C 110 SHEET 1 AA9 2 VAL C 49 LEU C 58 0 SHEET 2 AA9 2 GLU C 61 ASN C 69 -1 O LYS C 63 N TYR C 56 SHEET 1 AB1 8 THR D 9 PHE D 11 0 SHEET 2 AB1 8 GLU D 134 ILE D 137 -1 O THR D 135 N PHE D 11 SHEET 3 AB1 8 VAL D 28 THR D 33 -1 N GLU D 31 O VAL D 136 SHEET 4 AB1 8 TRP D 39 VAL D 45 -1 O VAL D 40 N GLY D 32 SHEET 5 AB1 8 TRP D 74 ARG D 81 -1 O PHE D 77 N LEU D 43 SHEET 6 AB1 8 GLN D 89 SER D 96 -1 O SER D 96 N TRP D 74 SHEET 7 AB1 8 SER D 109 GLU D 116 1 O GLY D 115 N THR D 95 SHEET 8 AB1 8 THR D 121 SER D 126 -1 O THR D 121 N HIS D 114 SHEET 1 AB210 THR D 9 PHE D 11 0 SHEET 2 AB210 GLU D 134 ILE D 137 -1 O THR D 135 N PHE D 11 SHEET 3 AB210 VAL D 28 THR D 33 -1 N GLU D 31 O VAL D 136 SHEET 4 AB210 TRP D 39 VAL D 45 -1 O VAL D 40 N GLY D 32 SHEET 5 AB210 TRP D 74 ARG D 81 -1 O PHE D 77 N LEU D 43 SHEET 6 AB210 GLN D 89 SER D 96 -1 O SER D 96 N TRP D 74 SHEET 7 AB210 SER D 109 GLU D 116 1 O GLY D 115 N THR D 95 SHEET 8 AB210 ALA D 101 PHE D 106 -1 N MET D 104 O TRP D 111 SHEET 9 AB210 TYR D 17 ASN D 22 -1 N ILE D 19 O PHE D 103 SHEET 10 AB210 GLU D 140 PRO D 145 -1 O ILE D 144 N TRP D 18 SHEET 1 AB3 2 VAL D 49 LEU D 58 0 SHEET 2 AB3 2 GLU D 61 ASN D 69 -1 O GLU D 61 N LEU D 58 CISPEP 1 GLY A 4 PRO A 5 0 -2.87 CISPEP 2 THR A 117 PRO A 118 0 4.42 CISPEP 3 GLY B 4 PRO B 5 0 1.64 CISPEP 4 THR B 117 PRO B 118 0 0.02 CISPEP 5 GLY C 4 PRO C 5 0 0.85 CISPEP 6 THR C 117 PRO C 118 0 2.55 CISPEP 7 GLY D 4 PRO D 5 0 -2.76 CISPEP 8 THR D 117 PRO D 118 0 -3.24 SITE 1 AC1 6 HIS A 114 HOH A 204 ARG B 92 THR B 93 SITE 2 AC1 6 HIS B 114 HOH B 324 SITE 1 AC2 6 THR C 93 HIS C 114 HOH C 305 THR D 93 SITE 2 AC2 6 HIS D 114 HOH D 217 CRYST1 56.691 76.000 73.881 90.00 91.89 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017639 0.000000 0.000582 0.00000 SCALE2 0.000000 0.013158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013543 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.847135 0.486719 -0.213229 58.13039 1 MTRIX2 2 0.488409 0.555118 -0.673276 6.00906 1 MTRIX3 2 -0.209329 -0.674498 -0.707978 55.63300 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 0.846252 0.302980 0.438247 -63.50018 1 MTRIX2 4 -0.491168 0.124957 0.862055 -24.96838 1 MTRIX3 4 0.206423 -0.944769 0.254559 5.94105 1 MTRIX1 5 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 5 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 5 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 6 -0.999862 -0.016535 -0.001435 98.29333 1 MTRIX2 6 -0.014980 0.861869 0.506910 -41.13851 1 MTRIX3 6 -0.007145 0.506862 -0.861998 83.21021 1 MTRIX1 7 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 7 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 7 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 8 -0.999990 0.003692 -0.002362 98.24294 1 MTRIX2 8 0.001925 0.854190 0.519958 -42.98336 1 MTRIX3 8 0.003937 0.519948 -0.854189 81.99042 1 MTRIX1 9 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 9 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 9 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 10 0.841211 0.328596 0.429406 -62.83220 1 MTRIX2 10 -0.490218 0.128395 0.862091 -25.21643 1 MTRIX3 10 0.228146 -0.935703 0.269090 3.68389 1 MTRIX1 11 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 11 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 11 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 12 -0.840251 -0.332428 -0.428334 160.81970 1 MTRIX2 12 -0.298252 -0.376351 0.877158 -25.97539 1 MTRIX3 12 -0.452796 0.864784 0.217082 76.61705 1