HEADER LIGASE 02-JAN-19 6NJ0 TITLE WILD-TYPE E. COLI MENE WITH BOUND M PHENYLETHER-LINKED ANALOGUE OF TITLE 2 OSB-AMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYLBENZOATE--COA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: O-SUCCINYLBENZOYL-COA SYNTHETASE,OSB-COA SYNTHETASE; COMPND 5 EC: 6.2.1.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MENE, B2260, JW2255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MENE, E. COLI, MENAQUINONE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SI,Y.YIN,J.B.FRENCH,P.J.TONGE REVDAT 3 13-MAR-24 6NJ0 1 REMARK REVDAT 2 17-APR-19 6NJ0 1 JRNL REVDAT 1 10-APR-19 6NJ0 0 JRNL AUTH C.E.EVANS,Y.SI,J.S.MATARLO,Y.YIN,J.B.FRENCH,P.J.TONGE, JRNL AUTH 2 D.S.TAN JRNL TITL STRUCTURE-BASED DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION JRNL TITL 2 OF NON-ACYL SULFAMATE INHIBITORS OF THE ADENYLATE-FORMING JRNL TITL 3 ENZYME MENE. JRNL REF BIOCHEMISTRY V. 58 1918 2019 JRNL REFN ISSN 1520-4995 JRNL PMID 30912442 JRNL DOI 10.1021/ACS.BIOCHEM.9B00003 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3421 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3120 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4660 ; 1.917 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7165 ; 1.083 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 6.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;33.460 ;22.713 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;14.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3827 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 724 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1751 ; 2.378 ; 2.693 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1750 ; 2.377 ; 2.693 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2181 ; 3.246 ; 4.023 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2182 ; 3.246 ; 4.024 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1670 ; 2.753 ; 2.851 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1668 ; 2.751 ; 2.851 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2478 ; 3.864 ; 4.183 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3834 ; 5.141 ;31.422 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3835 ; 5.140 ;31.419 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918061 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 54.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, TRIS REMARK 280 HYDROCHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.57300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.51650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.21200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.51650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.57300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.21200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 107 REMARK 465 GLY A 144 REMARK 465 SER A 145 REMARK 465 THR A 146 REMARK 465 GLY A 434 REMARK 465 GLY A 435 REMARK 465 ILE A 436 REMARK 465 LYS A 437 REMARK 465 ILE A 438 REMARK 465 GLN A 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 N CD1 REMARK 470 ASP A 25 CG OD1 OD2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LEU A 40 CD1 REMARK 470 VAL A 46 CG1 CG2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLN A 64 CG CD OE1 NE2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 GLU A 92 CD OE1 OE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 VAL A 105 CG1 REMARK 470 PRO A 106 O CB REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 ILE A 120 CB CG1 CG2 CD1 REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 VAL A 123 CB CG1 CG2 REMARK 470 GLU A 124 CB CG CD OE1 OE2 REMARK 470 LEU A 148 CD1 CD2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 HIS A 175 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 202 CZ NH1 NH2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 GLN A 213 OE1 REMARK 470 VAL A 252 CG2 REMARK 470 GLU A 253 OE1 OE2 REMARK 470 GLU A 256 OE2 REMARK 470 GLU A 282 OE2 REMARK 470 GLY A 285 CA REMARK 470 ALA A 287 CB REMARK 470 SER A 291 OG REMARK 470 LEU A 325 CD1 REMARK 470 ASP A 328 OD2 REMARK 470 ARG A 335 NE CZ NH1 NH2 REMARK 470 ASN A 342 CG OD1 ND2 REMARK 470 LYS A 344 CE NZ REMARK 470 ASP A 352 CG OD1 OD2 REMARK 470 GLU A 360 OE1 OE2 REMARK 470 GLU A 366 OE2 REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 378 CD1 REMARK 470 LYS A 388 CB CG CD CE NZ REMARK 470 GLU A 389 O CD OE1 OE2 REMARK 470 PHE A 390 CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 401 CB CG OD1 OD2 REMARK 470 GLU A 403 CB CG CD OE1 OE2 REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 430 CB CG CD OE1 OE2 REMARK 470 LEU A 431 CD2 REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 ASN A 433 C O REMARK 470 GLN A 441 CB CG CD OE1 NE2 REMARK 470 LEU A 443 CD1 REMARK 470 LYS A 444 CD CE NZ REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 TRP A 446 CZ2 REMARK 470 GLN A 448 CG CD OE1 NE2 REMARK 470 ARG A 449 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 450 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 50.83 -152.31 REMARK 500 ASP A 25 -18.46 78.24 REMARK 500 ALA A 201 -137.89 -95.09 REMARK 500 ASP A 207 153.86 -43.54 REMARK 500 SER A 276 -127.11 112.29 REMARK 500 ASP A 284 18.34 -142.13 REMARK 500 ASN A 303 -9.14 75.81 REMARK 500 HIS A 402 -105.12 -130.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KOY A 501 DBREF 6NJ0 A 1 451 UNP P37353 MENE_ECOLI 1 451 SEQRES 1 A 451 MET ILE PHE SER ASP TRP PRO TRP ARG HIS TRP ARG GLN SEQRES 2 A 451 VAL ARG GLY GLU THR ILE ALA LEU ARG LEU ASN ASP GLU SEQRES 3 A 451 GLN LEU ASN TRP ARG GLU LEU CYS ALA ARG VAL ASP GLU SEQRES 4 A 451 LEU ALA SER GLY PHE ALA VAL GLN GLY VAL VAL GLU GLY SEQRES 5 A 451 SER GLY VAL MET LEU ARG ALA TRP ASN THR PRO GLN THR SEQRES 6 A 451 LEU LEU ALA TRP LEU ALA LEU LEU GLN CYS GLY ALA ARG SEQRES 7 A 451 VAL LEU PRO VAL ASN PRO GLN LEU PRO GLN PRO LEU LEU SEQRES 8 A 451 GLU GLU LEU LEU PRO ASN LEU THR LEU GLN PHE ALA LEU SEQRES 9 A 451 VAL PRO ASP GLY GLU ASN THR PHE PRO ALA LEU THR SER SEQRES 10 A 451 LEU HIS ILE GLN LEU VAL GLU GLY ALA HIS ALA ALA THR SEQRES 11 A 451 TRP GLN PRO THR ARG LEU CYS SER MET THR LEU THR SER SEQRES 12 A 451 GLY SER THR GLY LEU PRO LYS ALA ALA VAL HIS THR TYR SEQRES 13 A 451 GLN ALA HIS LEU ALA SER ALA GLN GLY VAL LEU SER LEU SEQRES 14 A 451 ILE PRO PHE GLY ASP HIS ASP ASP TRP LEU LEU SER LEU SEQRES 15 A 451 PRO LEU PHE HIS VAL SER GLY GLN GLY ILE MET TRP ARG SEQRES 16 A 451 TRP LEU TYR ALA GLY ALA ARG MET THR VAL ARG ASP LYS SEQRES 17 A 451 GLN PRO LEU GLU GLN MET LEU ALA GLY CYS THR HIS ALA SEQRES 18 A 451 SER LEU VAL PRO THR GLN LEU TRP ARG LEU LEU VAL ASN SEQRES 19 A 451 ARG SER SER VAL SER LEU LYS ALA VAL LEU LEU GLY GLY SEQRES 20 A 451 ALA ALA ILE PRO VAL GLU LEU THR GLU GLN ALA ARG GLU SEQRES 21 A 451 GLN GLY ILE ARG CYS PHE CYS GLY TYR GLY LEU THR GLU SEQRES 22 A 451 PHE ALA SER THR VAL CYS ALA LYS GLU ALA ASP GLY LEU SEQRES 23 A 451 ALA ASP VAL GLY SER PRO LEU PRO GLY ARG GLU VAL LYS SEQRES 24 A 451 ILE VAL ASN ASN GLU VAL TRP LEU ARG ALA ALA SER MET SEQRES 25 A 451 ALA GLU GLY TYR TRP ARG ASN GLY GLN LEU VAL SER LEU SEQRES 26 A 451 VAL ASN ASP GLU GLY TRP TYR ALA THR ARG ASP ARG GLY SEQRES 27 A 451 GLU MET HIS ASN GLY LYS LEU THR ILE VAL GLY ARG LEU SEQRES 28 A 451 ASP ASN LEU PHE PHE SER GLY GLY GLU GLY ILE GLN PRO SEQRES 29 A 451 GLU GLU VAL GLU ARG VAL ILE ALA ALA HIS PRO ALA VAL SEQRES 30 A 451 LEU GLN VAL PHE ILE VAL PRO VAL ALA ASP LYS GLU PHE SEQRES 31 A 451 GLY HIS ARG PRO VAL ALA VAL MET GLU TYR ASP HIS GLU SEQRES 32 A 451 SER VAL ASP LEU SER GLU TRP VAL LYS ASP LYS LEU ALA SEQRES 33 A 451 ARG PHE GLN GLN PRO VAL ARG TRP LEU THR LEU PRO PRO SEQRES 34 A 451 GLU LEU LYS ASN GLY GLY ILE LYS ILE SER ARG GLN ALA SEQRES 35 A 451 LEU LYS GLU TRP VAL GLN ARG GLN GLN HET KOY A 501 38 HETNAM KOY 5'-O-{3-[3-(2-CARBOXYPHENYL)-3- HETNAM 2 KOY OXOPROPYL]PHENYL}ADENOSINE FORMUL 2 KOY C26 H25 N5 O7 FORMUL 3 HOH *258(H2 O) HELIX 1 AA1 TRP A 6 GLY A 16 1 11 HELIX 2 AA2 TRP A 30 GLN A 47 1 18 HELIX 3 AA3 THR A 62 CYS A 75 1 14 HELIX 4 AA4 PRO A 87 LEU A 95 1 9 HELIX 5 AA5 PRO A 96 LEU A 98 5 3 HELIX 6 AA6 TYR A 156 ILE A 170 1 15 HELIX 7 AA7 HIS A 186 GLY A 200 1 15 HELIX 8 AA8 PRO A 210 LEU A 215 1 6 HELIX 9 AA9 VAL A 224 ASN A 234 1 11 HELIX 10 AB1 PRO A 251 GLN A 261 1 11 HELIX 11 AB2 THR A 272 ALA A 275 5 4 HELIX 12 AB3 ASP A 352 LEU A 354 5 3 HELIX 13 AB4 GLN A 363 ALA A 373 1 11 HELIX 14 AB5 GLU A 409 LYS A 414 5 6 HELIX 15 AB6 ALA A 416 GLN A 420 5 5 HELIX 16 AB7 PRO A 428 LYS A 432 5 5 HELIX 17 AB8 ARG A 440 ARG A 449 1 10 SHEET 1 AA1 8 GLU A 26 ASN A 29 0 SHEET 2 AA1 8 ILE A 19 LEU A 23 -1 N ALA A 20 O LEU A 28 SHEET 3 AA1 8 ARG A 202 VAL A 205 1 O VAL A 205 N ARG A 22 SHEET 4 AA1 8 ASP A 177 LEU A 179 1 N TRP A 178 O ARG A 202 SHEET 5 AA1 8 HIS A 220 LEU A 223 1 O HIS A 220 N LEU A 179 SHEET 6 AA1 8 ALA A 242 LEU A 245 1 O LEU A 244 N ALA A 221 SHEET 7 AA1 8 CYS A 265 LEU A 271 1 O PHE A 266 N LEU A 245 SHEET 8 AA1 8 SER A 276 GLU A 282 -1 O VAL A 278 N TYR A 269 SHEET 1 AA2 4 ARG A 78 VAL A 82 0 SHEET 2 AA2 4 GLY A 54 ARG A 58 1 N VAL A 55 O LEU A 80 SHEET 3 AA2 4 PHE A 102 LEU A 104 1 O LEU A 104 N MET A 56 SHEET 4 AA2 4 THR A 116 SER A 117 1 O THR A 116 N ALA A 103 SHEET 1 AA3 4 LEU A 136 LEU A 141 0 SHEET 2 AA3 4 ALA A 151 THR A 155 -1 O HIS A 154 N CYS A 137 SHEET 3 AA3 4 GLY A 315 ARG A 318 -1 O GLY A 315 N VAL A 153 SHEET 4 AA3 4 GLN A 321 VAL A 323 -1 O GLN A 321 N ARG A 318 SHEET 1 AA4 4 GLU A 297 VAL A 301 0 SHEET 2 AA4 4 GLU A 304 ARG A 308 -1 O ARG A 308 N GLU A 297 SHEET 3 AA4 4 TYR A 332 HIS A 341 -1 O TYR A 332 N LEU A 307 SHEET 4 AA4 4 LYS A 344 ARG A 350 -1 O GLY A 349 N ARG A 337 SHEET 1 AA5 2 PHE A 355 SER A 357 0 SHEET 2 AA5 2 GLU A 360 ILE A 362 -1 O ILE A 362 N PHE A 355 SHEET 1 AA6 3 VAL A 377 ASP A 387 0 SHEET 2 AA6 3 GLY A 391 TYR A 400 -1 O VAL A 397 N PHE A 381 SHEET 3 AA6 3 TRP A 424 THR A 426 1 O LEU A 425 N ALA A 396 SITE 1 AC1 20 LEU A 182 SER A 188 ARG A 195 LEU A 223 SITE 2 AC1 20 LEU A 244 GLY A 246 ALA A 248 ALA A 249 SITE 3 AC1 20 GLY A 268 TYR A 269 GLY A 270 THR A 272 SITE 4 AC1 20 SER A 276 THR A 277 VAL A 289 ASP A 336 SITE 5 AC1 20 ARG A 350 HOH A 639 HOH A 643 HOH A 743 CRYST1 71.146 74.424 79.033 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012653 0.00000