HEADER TRANSFERASE 07-JAN-19 6NKP TITLE EPHA2 LBD IN COMPLEX WITH BA-WLA-YSKBIO PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BA-WLA-YSKBIO PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: BIOTIN LINKED TO LYS 13 SIDE-CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-PEPTIDE INTERACTION, KINASE, EPHRIN, EPH RECEPTOR, DRUG KEYWDS 2 DEVELOPMENT, SIGNALING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.C.LECHTENBERG,E.B.PASQUALE REVDAT 5 11-OCT-23 6NKP 1 REMARK REVDAT 4 04-DEC-19 6NKP 1 REMARK REVDAT 3 12-JUN-19 6NKP 1 JRNL REVDAT 2 08-MAY-19 6NKP 1 JRNL REVDAT 1 01-MAY-19 6NKP 0 JRNL AUTH M.GOMEZ-SOLER,M.PETERSEN GEHRING,B.C.LECHTENBERG, JRNL AUTH 2 E.ZAPATA-MERCADO,K.HRISTOVA,E.B.PASQUALE JRNL TITL ENGINEERING NANOMOLAR PEPTIDE LIGANDS THAT DIFFERENTIALLY JRNL TITL 2 MODULATE EPHA2 RECEPTOR SIGNALING. JRNL REF J.BIOL.CHEM. V. 294 8791 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31015204 JRNL DOI 10.1074/JBC.RA119.008213 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC2_3191: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 24868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9515 - 4.2250 1.00 2829 132 0.1568 0.1818 REMARK 3 2 4.2250 - 3.3551 1.00 2692 134 0.1338 0.1914 REMARK 3 3 3.3551 - 2.9315 1.00 2665 141 0.1588 0.2091 REMARK 3 4 2.9315 - 2.6636 1.00 2635 130 0.1829 0.2358 REMARK 3 5 2.6636 - 2.4728 0.99 2627 141 0.1809 0.2467 REMARK 3 6 2.4728 - 2.3271 0.99 2584 134 0.1845 0.2287 REMARK 3 7 2.3271 - 2.2106 0.99 2594 139 0.1805 0.2062 REMARK 3 8 2.2106 - 2.1144 0.99 2596 128 0.2006 0.2261 REMARK 3 9 2.1144 - 2.0330 0.93 2442 125 0.2384 0.3156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3174 REMARK 3 ANGLE : 1.171 4312 REMARK 3 CHIRALITY : 0.067 450 REMARK 3 PLANARITY : 0.008 551 REMARK 3 DIHEDRAL : 11.537 1859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4699 -12.1929 37.1397 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.1727 REMARK 3 T33: 0.1427 T12: 0.0261 REMARK 3 T13: -0.0002 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 5.1006 L22: 3.4982 REMARK 3 L33: 3.2658 L12: 3.8895 REMARK 3 L13: -3.9802 L23: -2.7443 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.2008 S13: 0.0143 REMARK 3 S21: -0.0672 S22: -0.1919 S23: -0.0160 REMARK 3 S31: 0.0982 S32: 0.2532 S33: 0.1810 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5947 6.4454 36.0288 REMARK 3 T TENSOR REMARK 3 T11: 0.3023 T22: 0.1590 REMARK 3 T33: 0.1707 T12: 0.0186 REMARK 3 T13: -0.0252 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.0891 L22: 4.3023 REMARK 3 L33: 1.5223 L12: 2.5947 REMARK 3 L13: 0.6369 L23: 2.0493 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: 0.0322 S13: 0.3131 REMARK 3 S21: 0.1312 S22: -0.0354 S23: 0.1275 REMARK 3 S31: -0.6346 S32: -0.0364 S33: 0.0369 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0489 -29.9573 13.8701 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.3310 REMARK 3 T33: 0.2790 T12: 0.0527 REMARK 3 T13: -0.0051 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 8.7777 L22: 6.7894 REMARK 3 L33: 2.2616 L12: -0.0296 REMARK 3 L13: -2.7718 L23: 2.0965 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: -0.8632 S13: -0.3280 REMARK 3 S21: 0.6003 S22: 0.3261 S23: -0.1209 REMARK 3 S31: 0.8022 S32: 0.3794 S33: -0.0497 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2498 -15.8230 31.6328 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2251 REMARK 3 T33: 0.2163 T12: 0.0004 REMARK 3 T13: -0.0539 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 5.5851 L22: 5.7226 REMARK 3 L33: 7.1532 L12: 0.2504 REMARK 3 L13: 0.8431 L23: -0.5478 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: 0.5053 S13: 0.1331 REMARK 3 S21: -0.8083 S22: 0.0617 S23: 0.4474 REMARK 3 S31: 0.4439 S32: -0.5092 S33: -0.1858 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5061 -9.6277 17.4631 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.2644 REMARK 3 T33: 0.1674 T12: 0.0092 REMARK 3 T13: -0.0243 T23: -0.0769 REMARK 3 L TENSOR REMARK 3 L11: 4.8662 L22: 7.0631 REMARK 3 L33: 3.2418 L12: -0.0969 REMARK 3 L13: 1.0812 L23: 0.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: 0.1819 S13: -0.0615 REMARK 3 S21: 0.5165 S22: 0.2332 S23: -0.5522 REMARK 3 S31: -0.1202 S32: 0.4632 S33: 0.0367 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7202 -23.9866 13.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.1451 REMARK 3 T33: 0.1707 T12: -0.0209 REMARK 3 T13: 0.0287 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.4233 L22: 4.3134 REMARK 3 L33: 4.4893 L12: 0.1137 REMARK 3 L13: 1.0060 L23: -0.1314 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.0392 S13: -0.5085 REMARK 3 S21: 0.2055 S22: 0.0495 S23: 0.0783 REMARK 3 S31: 0.5200 S32: 0.0444 S33: -0.0069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5988 -13.7945 5.7815 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1500 REMARK 3 T33: 0.1716 T12: -0.0196 REMARK 3 T13: 0.0001 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.5586 L22: 1.4898 REMARK 3 L33: 2.2152 L12: -0.9666 REMARK 3 L13: -0.5435 L23: -0.4235 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: 0.0415 S13: -0.0391 REMARK 3 S21: -0.3707 S22: -0.0659 S23: -0.0495 REMARK 3 S31: -0.2793 S32: -0.1116 S33: 0.0052 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9147 -6.6885 18.4879 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.3790 REMARK 3 T33: 0.2004 T12: 0.0666 REMARK 3 T13: 0.0190 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.5019 L22: 7.8224 REMARK 3 L33: 0.2901 L12: 0.7141 REMARK 3 L13: 0.1991 L23: 1.4756 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: 0.4337 S13: 0.0559 REMARK 3 S21: -0.2830 S22: -0.2787 S23: 0.7431 REMARK 3 S31: -0.5915 S32: -0.7532 S33: 0.0346 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2007 -21.2841 2.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1244 REMARK 3 T33: 0.1650 T12: -0.0638 REMARK 3 T13: 0.0244 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 5.0735 L22: 7.7319 REMARK 3 L33: 2.0015 L12: -5.4693 REMARK 3 L13: 0.5183 L23: 0.0211 REMARK 3 S TENSOR REMARK 3 S11: -0.0971 S12: -0.0897 S13: 0.0251 REMARK 3 S21: -0.1232 S22: 0.1504 S23: -0.2055 REMARK 3 S31: 0.0156 S32: 0.1360 S33: -0.0011 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0026 -8.1447 8.3625 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1583 REMARK 3 T33: 0.1112 T12: -0.0219 REMARK 3 T13: 0.0114 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.8679 L22: 4.3651 REMARK 3 L33: 1.6492 L12: -0.3414 REMARK 3 L13: -0.5250 L23: -0.1748 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.0198 S13: 0.1635 REMARK 3 S21: -0.2121 S22: 0.0916 S23: -0.2135 REMARK 3 S31: -0.2478 S32: -0.0402 S33: -0.1012 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9756 -0.0897 28.5819 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.2178 REMARK 3 T33: 0.1401 T12: 0.0403 REMARK 3 T13: -0.0516 T23: 0.0813 REMARK 3 L TENSOR REMARK 3 L11: 6.6876 L22: 3.6634 REMARK 3 L33: 3.2334 L12: -0.8093 REMARK 3 L13: 0.3873 L23: -3.2696 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: 0.1112 S13: 0.1150 REMARK 3 S21: -0.4047 S22: 0.2387 S23: 0.7024 REMARK 3 S31: -0.2535 S32: -0.4412 S33: 0.0133 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2780 -13.4901 29.2921 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.1708 REMARK 3 T33: 0.1509 T12: -0.0570 REMARK 3 T13: -0.0326 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.8739 L22: 3.6280 REMARK 3 L33: 6.1588 L12: 0.9486 REMARK 3 L13: 0.4731 L23: -0.0271 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.3068 S13: 0.0285 REMARK 3 S21: -0.3378 S22: 0.0957 S23: 0.3330 REMARK 3 S31: 0.0155 S32: -0.4376 S33: 0.0411 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0467 -11.2074 39.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.1466 REMARK 3 T33: 0.1327 T12: 0.0260 REMARK 3 T13: -0.0131 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.4581 L22: 1.7268 REMARK 3 L33: 1.7830 L12: 1.3144 REMARK 3 L13: -0.9786 L23: -0.5262 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.0593 S13: -0.0247 REMARK 3 S21: 0.0056 S22: -0.0138 S23: 0.0843 REMARK 3 S31: -0.0180 S32: 0.0347 S33: 0.0521 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4332 -12.0808 26.8021 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.4138 REMARK 3 T33: 0.2244 T12: 0.0672 REMARK 3 T13: -0.0389 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.3341 L22: 8.5528 REMARK 3 L33: 3.2948 L12: 2.5281 REMARK 3 L13: -1.0116 L23: -1.1756 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: -0.9835 S13: -0.0304 REMARK 3 S21: 0.3826 S22: -0.3135 S23: -0.6271 REMARK 3 S31: 0.2591 S32: 0.0198 S33: 0.2659 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6190 -11.3639 41.2117 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.2853 REMARK 3 T33: 0.1524 T12: 0.0637 REMARK 3 T13: -0.0342 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 5.5194 L22: 4.7455 REMARK 3 L33: 1.9447 L12: 3.4552 REMARK 3 L13: -0.3349 L23: -2.4386 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.1785 S13: -0.4438 REMARK 3 S21: 0.0263 S22: -0.1569 S23: -0.3930 REMARK 3 S31: 0.2142 S32: 0.6221 S33: 0.1574 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5351 -6.1739 42.6643 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.1338 REMARK 3 T33: 0.2325 T12: 0.0464 REMARK 3 T13: -0.0062 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 6.2476 L22: 2.3696 REMARK 3 L33: 1.4503 L12: 3.0872 REMARK 3 L13: -1.7036 L23: -0.9537 REMARK 3 S TENSOR REMARK 3 S11: 0.1914 S12: -0.1394 S13: 0.2001 REMARK 3 S21: 0.1056 S22: -0.1045 S23: 0.2184 REMARK 3 S31: -0.0752 S32: 0.0159 S33: -0.0554 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 29.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3HEI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M BIS-TRIS PH 5.5, 22.5% W/V PEG REMARK 280 3,350, 3% W/V 6-AMINOHEXANOIC ACID, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.45800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.55550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.54700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.55550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.45800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.54700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 ALA A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 GLN B 24 REMARK 465 GLY B 25 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 BAL C 1 REMARK 465 LYS C 13 REMARK 465 LYS D 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 70 54.24 -154.48 REMARK 500 CYS B 70 52.16 -158.20 REMARK 500 ASP B 78 75.66 -150.71 REMARK 500 GLU B 92 -70.30 -106.61 REMARK 500 GLU B 92 -69.78 -106.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BTN C 14 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTN C 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BAL D 1 and TRP D 2 DBREF 6NKP A 28 200 UNP P29317 EPHA2_HUMAN 28 200 DBREF 6NKP B 28 200 UNP P29317 EPHA2_HUMAN 28 200 DBREF 6NKP C 1 13 PDB 6NKP 6NKP 1 13 DBREF 6NKP D 1 13 PDB 6NKP 6NKP 1 13 SEQADV 6NKP MET A 21 UNP P29317 EXPRESSION TAG SEQADV 6NKP ALA A 22 UNP P29317 EXPRESSION TAG SEQADV 6NKP SER A 23 UNP P29317 EXPRESSION TAG SEQADV 6NKP GLN A 24 UNP P29317 EXPRESSION TAG SEQADV 6NKP GLY A 25 UNP P29317 EXPRESSION TAG SEQADV 6NKP PRO A 26 UNP P29317 EXPRESSION TAG SEQADV 6NKP GLY A 27 UNP P29317 EXPRESSION TAG SEQADV 6NKP ALA A 201 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS A 202 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS A 203 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS A 204 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS A 205 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS A 206 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS A 207 UNP P29317 EXPRESSION TAG SEQADV 6NKP MET B 21 UNP P29317 EXPRESSION TAG SEQADV 6NKP ALA B 22 UNP P29317 EXPRESSION TAG SEQADV 6NKP SER B 23 UNP P29317 EXPRESSION TAG SEQADV 6NKP GLN B 24 UNP P29317 EXPRESSION TAG SEQADV 6NKP GLY B 25 UNP P29317 EXPRESSION TAG SEQADV 6NKP PRO B 26 UNP P29317 EXPRESSION TAG SEQADV 6NKP GLY B 27 UNP P29317 EXPRESSION TAG SEQADV 6NKP ALA B 201 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS B 202 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS B 203 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS B 204 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS B 205 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS B 206 UNP P29317 EXPRESSION TAG SEQADV 6NKP HIS B 207 UNP P29317 EXPRESSION TAG SEQRES 1 A 187 MET ALA SER GLN GLY PRO GLY GLU VAL VAL LEU LEU ASP SEQRES 2 A 187 PHE ALA ALA ALA GLY GLY GLU LEU GLY TRP LEU THR HIS SEQRES 3 A 187 PRO TYR GLY LYS GLY TRP ASP LEU MET GLN ASN ILE MET SEQRES 4 A 187 ASN ASP MET PRO ILE TYR MET TYR SER VAL CYS ASN VAL SEQRES 5 A 187 MET SER GLY ASP GLN ASP ASN TRP LEU ARG THR ASN TRP SEQRES 6 A 187 VAL TYR ARG GLY GLU ALA GLU ARG ILE PHE ILE GLU LEU SEQRES 7 A 187 LYS PHE THR VAL ARG ASP CYS ASN SER PHE PRO GLY GLY SEQRES 8 A 187 ALA SER SER CYS LYS GLU THR PHE ASN LEU TYR TYR ALA SEQRES 9 A 187 GLU SER ASP LEU ASP TYR GLY THR ASN PHE GLN LYS ARG SEQRES 10 A 187 LEU PHE THR LYS ILE ASP THR ILE ALA PRO ASP GLU ILE SEQRES 11 A 187 THR VAL SER SER ASP PHE GLU ALA ARG HIS VAL LYS LEU SEQRES 12 A 187 ASN VAL GLU GLU ARG SER VAL GLY PRO LEU THR ARG LYS SEQRES 13 A 187 GLY PHE TYR LEU ALA PHE GLN ASP ILE GLY ALA CYS VAL SEQRES 14 A 187 ALA LEU LEU SER VAL ARG VAL TYR TYR LYS LYS ALA HIS SEQRES 15 A 187 HIS HIS HIS HIS HIS SEQRES 1 B 187 MET ALA SER GLN GLY PRO GLY GLU VAL VAL LEU LEU ASP SEQRES 2 B 187 PHE ALA ALA ALA GLY GLY GLU LEU GLY TRP LEU THR HIS SEQRES 3 B 187 PRO TYR GLY LYS GLY TRP ASP LEU MET GLN ASN ILE MET SEQRES 4 B 187 ASN ASP MET PRO ILE TYR MET TYR SER VAL CYS ASN VAL SEQRES 5 B 187 MET SER GLY ASP GLN ASP ASN TRP LEU ARG THR ASN TRP SEQRES 6 B 187 VAL TYR ARG GLY GLU ALA GLU ARG ILE PHE ILE GLU LEU SEQRES 7 B 187 LYS PHE THR VAL ARG ASP CYS ASN SER PHE PRO GLY GLY SEQRES 8 B 187 ALA SER SER CYS LYS GLU THR PHE ASN LEU TYR TYR ALA SEQRES 9 B 187 GLU SER ASP LEU ASP TYR GLY THR ASN PHE GLN LYS ARG SEQRES 10 B 187 LEU PHE THR LYS ILE ASP THR ILE ALA PRO ASP GLU ILE SEQRES 11 B 187 THR VAL SER SER ASP PHE GLU ALA ARG HIS VAL LYS LEU SEQRES 12 B 187 ASN VAL GLU GLU ARG SER VAL GLY PRO LEU THR ARG LYS SEQRES 13 B 187 GLY PHE TYR LEU ALA PHE GLN ASP ILE GLY ALA CYS VAL SEQRES 14 B 187 ALA LEU LEU SER VAL ARG VAL TYR TYR LYS LYS ALA HIS SEQRES 15 B 187 HIS HIS HIS HIS HIS SEQRES 1 C 13 BAL TRP LEU ALA TYR PRO ASP SER VAL PRO TYR SER LYS SEQRES 1 D 13 BAL TRP LEU ALA TYR PRO ASP SER VAL PRO TYR SER LYS HET BAL D 1 11 HET BTN C 14 30 HETNAM BAL BETA-ALANINE HETNAM BTN BIOTIN FORMUL 4 BAL C3 H7 N O2 FORMUL 5 BTN C10 H16 N2 O3 S FORMUL 6 HOH *276(H2 O) HELIX 1 AA1 ALA A 35 GLY A 38 5 4 HELIX 2 AA2 ASP A 104 PHE A 108 5 5 HELIX 3 AA3 GLN A 135 PHE A 139 5 5 HELIX 4 AA4 VAL A 152 ALA A 158 1 7 HELIX 5 AA5 ALA B 35 GLY B 38 5 4 HELIX 6 AA6 ASP B 104 PHE B 108 5 5 HELIX 7 AA7 GLN B 135 PHE B 139 5 5 HELIX 8 AA8 VAL B 152 ALA B 158 1 7 SHEET 1 AA1 4 GLU A 28 ASP A 33 0 SHEET 2 AA1 4 CYS A 188 LYS A 199 -1 O VAL A 196 N LEU A 31 SHEET 3 AA1 4 ILE A 94 VAL A 102 -1 N PHE A 95 O TYR A 197 SHEET 4 AA1 4 ASN A 164 VAL A 170 -1 O ARG A 168 N ILE A 96 SHEET 1 AA2 5 GLU A 28 ASP A 33 0 SHEET 2 AA2 5 CYS A 188 LYS A 199 -1 O VAL A 196 N LEU A 31 SHEET 3 AA2 5 ILE A 64 CYS A 70 -1 N TYR A 67 O LEU A 191 SHEET 4 AA2 5 ASP A 53 ASN A 57 -1 N MET A 55 O MET A 66 SHEET 5 AA2 5 VAL C 9 PRO C 10 -1 O VAL C 9 N GLN A 56 SHEET 1 AA3 4 LEU A 44 HIS A 46 0 SHEET 2 AA3 4 ASN A 79 ARG A 82 -1 O TRP A 80 N HIS A 46 SHEET 3 AA3 4 GLY A 177 ASP A 184 -1 O ASP A 184 N ASN A 79 SHEET 4 AA3 4 VAL A 86 TYR A 87 -1 N VAL A 86 O PHE A 178 SHEET 1 AA4 5 LEU A 44 HIS A 46 0 SHEET 2 AA4 5 ASN A 79 ARG A 82 -1 O TRP A 80 N HIS A 46 SHEET 3 AA4 5 GLY A 177 ASP A 184 -1 O ASP A 184 N ASN A 79 SHEET 4 AA4 5 PHE A 119 SER A 126 -1 N TYR A 122 O ALA A 181 SHEET 5 AA4 5 THR A 140 ILE A 145 -1 O ILE A 145 N PHE A 119 SHEET 1 AA5 4 GLU B 28 ASP B 33 0 SHEET 2 AA5 4 VAL B 189 LYS B 199 -1 O VAL B 196 N LEU B 31 SHEET 3 AA5 4 ILE B 94 VAL B 102 -1 N GLU B 97 O ARG B 195 SHEET 4 AA5 4 ASN B 164 VAL B 170 -1 O ARG B 168 N ILE B 96 SHEET 1 AA6 5 GLU B 28 ASP B 33 0 SHEET 2 AA6 5 VAL B 189 LYS B 199 -1 O VAL B 196 N LEU B 31 SHEET 3 AA6 5 ILE B 64 VAL B 69 -1 N TYR B 67 O LEU B 191 SHEET 4 AA6 5 ASP B 53 ASN B 57 -1 N MET B 55 O MET B 66 SHEET 5 AA6 5 VAL D 9 PRO D 10 -1 O VAL D 9 N GLN B 56 SHEET 1 AA7 4 LEU B 44 HIS B 46 0 SHEET 2 AA7 4 ASN B 79 ARG B 82 -1 O TRP B 80 N HIS B 46 SHEET 3 AA7 4 GLY B 177 ASP B 184 -1 O ASP B 184 N ASN B 79 SHEET 4 AA7 4 VAL B 86 TYR B 87 -1 N VAL B 86 O PHE B 178 SHEET 1 AA8 5 LEU B 44 HIS B 46 0 SHEET 2 AA8 5 ASN B 79 ARG B 82 -1 O TRP B 80 N HIS B 46 SHEET 3 AA8 5 GLY B 177 ASP B 184 -1 O ASP B 184 N ASN B 79 SHEET 4 AA8 5 PHE B 119 SER B 126 -1 N TYR B 122 O ALA B 181 SHEET 5 AA8 5 THR B 140 ILE B 145 -1 O ILE B 145 N PHE B 119 SSBOND 1 CYS A 70 CYS A 188 1555 1555 2.04 SSBOND 2 CYS A 105 CYS A 115 1555 1555 2.07 SSBOND 3 CYS B 70 CYS B 188 1555 1555 2.06 SSBOND 4 CYS B 105 CYS B 115 1555 1555 2.07 LINK C BAL D 1 N TRP D 2 1555 1555 1.33 CISPEP 1 HIS A 46 PRO A 47 0 -0.70 CISPEP 2 GLY A 171 PRO A 172 0 -0.77 CISPEP 3 HIS B 46 PRO B 47 0 -1.74 CISPEP 4 GLY B 171 PRO B 172 0 4.82 SITE 1 AC1 7 TRP B 43 LEU B 44 THR B 45 TYR B 48 SITE 2 AC1 7 THR B 132 PHE B 134 HOH B 410 SITE 1 AC2 9 THR A 174 ARG A 175 CYS B 70 MET B 73 SITE 2 AC2 9 PHE B 108 PRO B 109 LEU D 3 HOH D 110 SITE 3 AC2 9 HOH D 111 CRYST1 60.916 67.094 93.111 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010740 0.00000