HEADER TRANSFERASE/ANTIBIOTIC 07-JAN-19 6NL4 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DETHIOBIOTIN TITLE 2 SYNTHETASE IN COMPLEX WITH GEMCITABINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DETHIOBIOTIN SYNTHETASE BIOD; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DTB SYNTHETASE,DTBS,DETHIOBIOTIN SYNTHASE; COMPND 5 EC: 6.3.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: BIOD, RV1570, MTCY336.33C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS ENZYME, SYNTHETASE, NUCLEOTIDE TRIPHOSPHATE BINDING, TRANSFERASE, KEYWDS 2 TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.P.THOMPSON,S.W.POLYAK,K.L.WEGENER,J.B.BRUNING REVDAT 2 13-MAR-24 6NL4 1 REMARK REVDAT 1 15-JAN-20 6NL4 0 JRNL AUTH A.P.THOMPSON,S.W.POLYAK,K.L.WEGENER,J.B.BRUNING JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DETHIOBIOTIN JRNL TITL 2 SYNTHETASE IN COMPLEX WITH GEMCITABINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 61885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3561 - 5.5742 0.99 2893 141 0.1750 0.2188 REMARK 3 2 5.5742 - 4.4265 1.00 2785 147 0.1482 0.1726 REMARK 3 3 4.4265 - 3.8676 1.00 2726 155 0.1471 0.1895 REMARK 3 4 3.8676 - 3.5142 1.00 2693 151 0.1830 0.2457 REMARK 3 5 3.5142 - 3.2625 1.00 2717 128 0.1786 0.2262 REMARK 3 6 3.2625 - 3.0702 1.00 2695 137 0.1957 0.2698 REMARK 3 7 3.0702 - 2.9165 1.00 2700 135 0.2010 0.3110 REMARK 3 8 2.9165 - 2.7896 1.00 2681 132 0.2041 0.2504 REMARK 3 9 2.7896 - 2.6822 1.00 2713 136 0.1983 0.2452 REMARK 3 10 2.6822 - 2.5897 1.00 2676 130 0.1947 0.2479 REMARK 3 11 2.5897 - 2.5087 1.00 2655 146 0.1970 0.2604 REMARK 3 12 2.5087 - 2.4370 1.00 2678 128 0.1896 0.2321 REMARK 3 13 2.4370 - 2.3729 1.00 2691 147 0.1993 0.2644 REMARK 3 14 2.3729 - 2.3150 1.00 2620 137 0.2377 0.3072 REMARK 3 15 2.3150 - 2.2624 0.99 2634 141 0.3460 0.4302 REMARK 3 16 2.2624 - 2.2142 0.98 2587 123 0.3648 0.4612 REMARK 3 17 2.2142 - 2.1700 1.00 2651 166 0.3057 0.3349 REMARK 3 18 2.1700 - 2.1290 1.00 2603 157 0.2523 0.3395 REMARK 3 19 2.1290 - 2.0910 1.00 2689 136 0.2370 0.3212 REMARK 3 20 2.0910 - 2.0556 1.00 2611 150 0.2451 0.3110 REMARK 3 21 2.0556 - 2.0224 1.00 2653 156 0.2662 0.3012 REMARK 3 22 2.0224 - 1.9913 0.92 2444 111 0.2972 0.3892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6544 REMARK 3 ANGLE : 0.867 8987 REMARK 3 CHIRALITY : 0.054 1122 REMARK 3 PLANARITY : 0.006 1185 REMARK 3 DIHEDRAL : 19.422 3892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 - 1.7 M AMMONIUM SULFATE, 0.1 M REMARK 280 TRIS PH 8, 10 - 15% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.75700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.97550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.03800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.97550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.75700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.03800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 226 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 GLY D 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 HIS C -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 160 CD OE1 NE2 REMARK 470 HIS D -1 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 218 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 544 O HOH D 413 2.08 REMARK 500 O HOH B 611 O HOH B 620 2.13 REMARK 500 O HOH C 521 O HOH C 549 2.14 REMARK 500 O HOH B 474 O HOH B 592 2.15 REMARK 500 O PRO B 175 O HOH B 401 2.16 REMARK 500 O HOH A 480 O HOH A 572 2.18 REMARK 500 O HOH B 491 O HOH B 577 2.19 REMARK 500 O HOH A 571 O HOH A 592 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 65 -72.62 -152.26 REMARK 500 ASP B 48 82.11 -161.86 REMARK 500 ASP C 48 89.49 -152.32 REMARK 500 LEU C 65 -83.14 -146.69 REMARK 500 ASP D 48 86.97 -150.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 611 DISTANCE = 6.24 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEO D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CVE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DETHIOBIOTIN REMARK 900 SYNTHETASE IN COMPLEX WITH CYTIDINE TRIPHOSPHATE AND 7,8- REMARK 900 DIAMINOPELARGONIC ACID DBREF 6NL4 A 2 226 UNP P9WPQ5 BIOD_MYCTU 2 226 DBREF 6NL4 B 2 226 UNP P9WPQ5 BIOD_MYCTU 2 226 DBREF 6NL4 C 2 226 UNP P9WPQ5 BIOD_MYCTU 2 226 DBREF 6NL4 D 2 226 UNP P9WPQ5 BIOD_MYCTU 2 226 SEQADV 6NL4 HIS A -6 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS A -5 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS A -4 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS A -3 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS A -2 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS A -1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY A 0 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY A 1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS B -6 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS B -5 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS B -4 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS B -3 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS B -2 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS B -1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY B 0 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY B 1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS C -6 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS C -5 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS C -4 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS C -3 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS C -2 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS C -1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY C 0 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY C 1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS D -6 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS D -5 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS D -4 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS D -3 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS D -2 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 HIS D -1 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY D 0 UNP P9WPQ5 EXPRESSION TAG SEQADV 6NL4 GLY D 1 UNP P9WPQ5 EXPRESSION TAG SEQRES 1 A 233 HIS HIS HIS HIS HIS HIS GLY GLY THR ILE LEU VAL VAL SEQRES 2 A 233 THR GLY THR GLY THR GLY VAL GLY LYS THR VAL VAL CYS SEQRES 3 A 233 ALA ALA LEU ALA SER ALA ALA ARG GLN ALA GLY ILE ASP SEQRES 4 A 233 VAL ALA VAL CYS LYS PRO VAL GLN THR GLY THR ALA ARG SEQRES 5 A 233 GLY ASP ASP ASP LEU ALA GLU VAL GLY ARG LEU ALA GLY SEQRES 6 A 233 VAL THR GLN LEU ALA GLY LEU ALA ARG TYR PRO GLN PRO SEQRES 7 A 233 MET ALA PRO ALA ALA ALA ALA GLU HIS ALA GLY MET ALA SEQRES 8 A 233 LEU PRO ALA ARG ASP GLN ILE VAL ARG LEU ILE ALA ASP SEQRES 9 A 233 LEU ASP ARG PRO GLY ARG LEU THR LEU VAL GLU GLY ALA SEQRES 10 A 233 GLY GLY LEU LEU VAL GLU LEU ALA GLU PRO GLY VAL THR SEQRES 11 A 233 LEU ARG ASP VAL ALA VAL ASP VAL ALA ALA ALA ALA LEU SEQRES 12 A 233 VAL VAL VAL THR ALA ASP LEU GLY THR LEU ASN HIS THR SEQRES 13 A 233 LYS LEU THR LEU GLU ALA LEU ALA ALA GLN GLN VAL SER SEQRES 14 A 233 CYS ALA GLY LEU VAL ILE GLY SER TRP PRO ASP PRO PRO SEQRES 15 A 233 GLY LEU VAL ALA ALA SER ASN ARG SER ALA LEU ALA ARG SEQRES 16 A 233 ILE ALA MET VAL ARG ALA ALA LEU PRO ALA GLY ALA ALA SEQRES 17 A 233 SER LEU ASP ALA GLY ASP PHE ALA ALA MET SER ALA ALA SEQRES 18 A 233 ALA PHE ASP ARG ASN TRP VAL ALA GLY LEU VAL GLY SEQRES 1 B 233 HIS HIS HIS HIS HIS HIS GLY GLY THR ILE LEU VAL VAL SEQRES 2 B 233 THR GLY THR GLY THR GLY VAL GLY LYS THR VAL VAL CYS SEQRES 3 B 233 ALA ALA LEU ALA SER ALA ALA ARG GLN ALA GLY ILE ASP SEQRES 4 B 233 VAL ALA VAL CYS LYS PRO VAL GLN THR GLY THR ALA ARG SEQRES 5 B 233 GLY ASP ASP ASP LEU ALA GLU VAL GLY ARG LEU ALA GLY SEQRES 6 B 233 VAL THR GLN LEU ALA GLY LEU ALA ARG TYR PRO GLN PRO SEQRES 7 B 233 MET ALA PRO ALA ALA ALA ALA GLU HIS ALA GLY MET ALA SEQRES 8 B 233 LEU PRO ALA ARG ASP GLN ILE VAL ARG LEU ILE ALA ASP SEQRES 9 B 233 LEU ASP ARG PRO GLY ARG LEU THR LEU VAL GLU GLY ALA SEQRES 10 B 233 GLY GLY LEU LEU VAL GLU LEU ALA GLU PRO GLY VAL THR SEQRES 11 B 233 LEU ARG ASP VAL ALA VAL ASP VAL ALA ALA ALA ALA LEU SEQRES 12 B 233 VAL VAL VAL THR ALA ASP LEU GLY THR LEU ASN HIS THR SEQRES 13 B 233 LYS LEU THR LEU GLU ALA LEU ALA ALA GLN GLN VAL SER SEQRES 14 B 233 CYS ALA GLY LEU VAL ILE GLY SER TRP PRO ASP PRO PRO SEQRES 15 B 233 GLY LEU VAL ALA ALA SER ASN ARG SER ALA LEU ALA ARG SEQRES 16 B 233 ILE ALA MET VAL ARG ALA ALA LEU PRO ALA GLY ALA ALA SEQRES 17 B 233 SER LEU ASP ALA GLY ASP PHE ALA ALA MET SER ALA ALA SEQRES 18 B 233 ALA PHE ASP ARG ASN TRP VAL ALA GLY LEU VAL GLY SEQRES 1 C 233 HIS HIS HIS HIS HIS HIS GLY GLY THR ILE LEU VAL VAL SEQRES 2 C 233 THR GLY THR GLY THR GLY VAL GLY LYS THR VAL VAL CYS SEQRES 3 C 233 ALA ALA LEU ALA SER ALA ALA ARG GLN ALA GLY ILE ASP SEQRES 4 C 233 VAL ALA VAL CYS LYS PRO VAL GLN THR GLY THR ALA ARG SEQRES 5 C 233 GLY ASP ASP ASP LEU ALA GLU VAL GLY ARG LEU ALA GLY SEQRES 6 C 233 VAL THR GLN LEU ALA GLY LEU ALA ARG TYR PRO GLN PRO SEQRES 7 C 233 MET ALA PRO ALA ALA ALA ALA GLU HIS ALA GLY MET ALA SEQRES 8 C 233 LEU PRO ALA ARG ASP GLN ILE VAL ARG LEU ILE ALA ASP SEQRES 9 C 233 LEU ASP ARG PRO GLY ARG LEU THR LEU VAL GLU GLY ALA SEQRES 10 C 233 GLY GLY LEU LEU VAL GLU LEU ALA GLU PRO GLY VAL THR SEQRES 11 C 233 LEU ARG ASP VAL ALA VAL ASP VAL ALA ALA ALA ALA LEU SEQRES 12 C 233 VAL VAL VAL THR ALA ASP LEU GLY THR LEU ASN HIS THR SEQRES 13 C 233 LYS LEU THR LEU GLU ALA LEU ALA ALA GLN GLN VAL SER SEQRES 14 C 233 CYS ALA GLY LEU VAL ILE GLY SER TRP PRO ASP PRO PRO SEQRES 15 C 233 GLY LEU VAL ALA ALA SER ASN ARG SER ALA LEU ALA ARG SEQRES 16 C 233 ILE ALA MET VAL ARG ALA ALA LEU PRO ALA GLY ALA ALA SEQRES 17 C 233 SER LEU ASP ALA GLY ASP PHE ALA ALA MET SER ALA ALA SEQRES 18 C 233 ALA PHE ASP ARG ASN TRP VAL ALA GLY LEU VAL GLY SEQRES 1 D 233 HIS HIS HIS HIS HIS HIS GLY GLY THR ILE LEU VAL VAL SEQRES 2 D 233 THR GLY THR GLY THR GLY VAL GLY LYS THR VAL VAL CYS SEQRES 3 D 233 ALA ALA LEU ALA SER ALA ALA ARG GLN ALA GLY ILE ASP SEQRES 4 D 233 VAL ALA VAL CYS LYS PRO VAL GLN THR GLY THR ALA ARG SEQRES 5 D 233 GLY ASP ASP ASP LEU ALA GLU VAL GLY ARG LEU ALA GLY SEQRES 6 D 233 VAL THR GLN LEU ALA GLY LEU ALA ARG TYR PRO GLN PRO SEQRES 7 D 233 MET ALA PRO ALA ALA ALA ALA GLU HIS ALA GLY MET ALA SEQRES 8 D 233 LEU PRO ALA ARG ASP GLN ILE VAL ARG LEU ILE ALA ASP SEQRES 9 D 233 LEU ASP ARG PRO GLY ARG LEU THR LEU VAL GLU GLY ALA SEQRES 10 D 233 GLY GLY LEU LEU VAL GLU LEU ALA GLU PRO GLY VAL THR SEQRES 11 D 233 LEU ARG ASP VAL ALA VAL ASP VAL ALA ALA ALA ALA LEU SEQRES 12 D 233 VAL VAL VAL THR ALA ASP LEU GLY THR LEU ASN HIS THR SEQRES 13 D 233 LYS LEU THR LEU GLU ALA LEU ALA ALA GLN GLN VAL SER SEQRES 14 D 233 CYS ALA GLY LEU VAL ILE GLY SER TRP PRO ASP PRO PRO SEQRES 15 D 233 GLY LEU VAL ALA ALA SER ASN ARG SER ALA LEU ALA ARG SEQRES 16 D 233 ILE ALA MET VAL ARG ALA ALA LEU PRO ALA GLY ALA ALA SEQRES 17 D 233 SER LEU ASP ALA GLY ASP PHE ALA ALA MET SER ALA ALA SEQRES 18 D 233 ALA PHE ASP ARG ASN TRP VAL ALA GLY LEU VAL GLY HET SO4 A 301 5 HET GEO A 302 18 HET SO4 B 301 5 HET GEO B 302 18 HET SO4 C 301 5 HET SO4 D 301 5 HET GEO D 302 18 HETNAM SO4 SULFATE ION HETNAM GEO GEMCITABINE HETSYN GEO 2',2'-DIFLUORODEOXYCYTIDINE FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 GEO 3(C9 H11 F2 N3 O4) FORMUL 12 HOH *814(H2 O) HELIX 1 AA1 GLY A 14 ALA A 29 1 16 HELIX 2 AA2 GLY A 42 GLY A 46 5 5 HELIX 3 AA3 ASP A 48 GLY A 58 1 11 HELIX 4 AA4 ALA A 73 ALA A 81 1 9 HELIX 5 AA5 ALA A 87 ASP A 99 1 13 HELIX 6 AA6 LEU A 124 VAL A 131 1 8 HELIX 7 AA7 GLY A 144 GLN A 159 1 16 HELIX 8 AA8 GLY A 176 ALA A 190 1 15 HELIX 9 AA9 GLY A 199 LEU A 203 5 5 HELIX 10 AB1 ASP A 204 PHE A 216 1 13 HELIX 11 AB2 ASP A 217 LEU A 224 1 8 HELIX 12 AB3 GLY B 14 ALA B 29 1 16 HELIX 13 AB4 GLY B 42 GLY B 46 5 5 HELIX 14 AB5 ASP B 48 GLY B 58 1 11 HELIX 15 AB6 ALA B 73 GLY B 82 1 10 HELIX 16 AB7 ALA B 87 ASP B 99 1 13 HELIX 17 AB8 LEU B 124 ALA B 132 1 9 HELIX 18 AB9 GLY B 144 GLN B 159 1 16 HELIX 19 AC1 GLY B 176 ALA B 190 1 15 HELIX 20 AC2 GLY B 199 LEU B 203 5 5 HELIX 21 AC3 ASP B 204 PHE B 216 1 13 HELIX 22 AC4 ASP B 217 LEU B 224 1 8 HELIX 23 AC5 GLY C 14 ALA C 29 1 16 HELIX 24 AC6 GLY C 42 GLY C 46 5 5 HELIX 25 AC7 ASP C 48 GLY C 58 1 11 HELIX 26 AC8 ALA C 73 GLY C 82 1 10 HELIX 27 AC9 ALA C 87 ASP C 99 1 13 HELIX 28 AD1 LEU C 124 VAL C 131 1 8 HELIX 29 AD2 GLY C 144 GLN C 159 1 16 HELIX 30 AD3 GLY C 176 ALA C 190 1 15 HELIX 31 AD4 GLY C 199 LEU C 203 5 5 HELIX 32 AD5 ASP C 204 PHE C 216 1 13 HELIX 33 AD6 ASP C 217 GLY C 223 1 7 HELIX 34 AD7 GLY D 14 ALA D 29 1 16 HELIX 35 AD8 GLY D 42 GLY D 46 5 5 HELIX 36 AD9 ASP D 48 GLY D 58 1 11 HELIX 37 AE1 ALA D 73 GLY D 82 1 10 HELIX 38 AE2 ALA D 87 ASP D 99 1 13 HELIX 39 AE3 LEU D 124 ALA D 132 1 9 HELIX 40 AE4 GLY D 144 GLN D 159 1 16 HELIX 41 AE5 GLY D 176 ALA D 190 1 15 HELIX 42 AE6 GLY D 199 LEU D 203 5 5 HELIX 43 AE7 ASP D 204 PHE D 216 1 13 HELIX 44 AE8 ASP D 217 LEU D 224 1 8 SHEET 1 AA1 7 LEU A 62 ARG A 67 0 SHEET 2 AA1 7 ASP A 32 GLN A 40 1 N PRO A 38 O ALA A 66 SHEET 3 AA1 7 ARG A 103 GLU A 108 1 O LEU A 106 N CYS A 36 SHEET 4 AA1 7 THR A 2 GLY A 8 1 N LEU A 4 O VAL A 107 SHEET 5 AA1 7 ALA A 134 VAL A 139 1 O VAL A 138 N THR A 7 SHEET 6 AA1 7 CYS A 163 TRP A 171 1 O VAL A 167 N VAL A 139 SHEET 7 AA1 7 VAL A 192 PRO A 197 1 O ARG A 193 N LEU A 166 SHEET 1 AA2 2 GLU A 116 ALA A 118 0 SHEET 2 AA2 2 VAL A 122 THR A 123 -1 O VAL A 122 N LEU A 117 SHEET 1 AA3 7 GLN B 61 ALA B 63 0 SHEET 2 AA3 7 ASP B 32 CYS B 36 1 N VAL B 35 O GLN B 61 SHEET 3 AA3 7 ARG B 103 GLU B 108 1 O LEU B 106 N CYS B 36 SHEET 4 AA3 7 THR B 2 GLY B 8 1 N THR B 2 O THR B 105 SHEET 5 AA3 7 ALA B 134 VAL B 139 1 O LEU B 136 N VAL B 5 SHEET 6 AA3 7 CYS B 163 TRP B 171 1 O VAL B 167 N VAL B 139 SHEET 7 AA3 7 VAL B 192 PRO B 197 1 O LEU B 196 N TRP B 171 SHEET 1 AA4 2 VAL B 39 GLN B 40 0 SHEET 2 AA4 2 ALA B 66 ARG B 67 1 O ALA B 66 N GLN B 40 SHEET 1 AA5 2 GLU B 116 ALA B 118 0 SHEET 2 AA5 2 VAL B 122 THR B 123 -1 O VAL B 122 N LEU B 117 SHEET 1 AA6 7 LEU C 62 ARG C 67 0 SHEET 2 AA6 7 ASP C 32 GLN C 40 1 N PRO C 38 O ALA C 66 SHEET 3 AA6 7 ARG C 103 GLU C 108 1 O LEU C 104 N ASP C 32 SHEET 4 AA6 7 THR C 2 GLY C 8 1 N LEU C 4 O THR C 105 SHEET 5 AA6 7 ALA C 134 VAL C 139 1 O VAL C 138 N THR C 7 SHEET 6 AA6 7 CYS C 163 TRP C 171 1 O VAL C 167 N VAL C 139 SHEET 7 AA6 7 VAL C 192 PRO C 197 1 O LEU C 196 N TRP C 171 SHEET 1 AA7 2 GLU C 116 ALA C 118 0 SHEET 2 AA7 2 VAL C 122 THR C 123 -1 O VAL C 122 N LEU C 117 SHEET 1 AA8 7 GLN D 61 ALA D 63 0 SHEET 2 AA8 7 ASP D 32 CYS D 36 1 N VAL D 35 O ALA D 63 SHEET 3 AA8 7 ARG D 103 GLU D 108 1 O LEU D 106 N CYS D 36 SHEET 4 AA8 7 THR D 2 GLY D 8 1 N VAL D 6 O VAL D 107 SHEET 5 AA8 7 ALA D 134 VAL D 139 1 O VAL D 138 N THR D 7 SHEET 6 AA8 7 CYS D 163 TRP D 171 1 O ALA D 164 N ALA D 135 SHEET 7 AA8 7 VAL D 192 PRO D 197 1 O LEU D 196 N TRP D 171 SHEET 1 AA9 2 VAL D 39 GLN D 40 0 SHEET 2 AA9 2 ALA D 66 ARG D 67 1 O ALA D 66 N GLN D 40 SHEET 1 AB1 2 GLU D 116 ALA D 118 0 SHEET 2 AB1 2 VAL D 122 THR D 123 -1 O VAL D 122 N LEU D 117 CISPEP 1 GLU A 119 PRO A 120 0 -3.62 CISPEP 2 ASP A 173 PRO A 174 0 6.49 CISPEP 3 GLU B 119 PRO B 120 0 -0.90 CISPEP 4 ASP B 173 PRO B 174 0 -4.26 CISPEP 5 GLU C 119 PRO C 120 0 -3.94 CISPEP 6 GLU C 119 PRO C 120 0 -3.58 CISPEP 7 ASP C 173 PRO C 174 0 3.77 CISPEP 8 GLU D 119 PRO D 120 0 -1.60 CISPEP 9 ASP D 173 PRO D 174 0 1.22 CISPEP 10 ASP D 173 PRO D 174 0 1.04 SITE 1 AC1 10 GLY A 12 VAL A 13 GLY A 14 LYS A 15 SITE 2 AC1 10 THR A 16 GEO A 302 HOH A 404 HOH A 405 SITE 3 AC1 10 HOH A 460 HOH A 505 SITE 1 AC2 12 GLY A 12 GLY A 14 VAL A 17 GLY A 169 SITE 2 AC2 12 SER A 170 PRO A 197 GLY A 199 ALA A 200 SITE 3 AC2 12 ALA A 201 SO4 A 301 HOH A 406 HOH A 443 SITE 1 AC3 9 GLY B 12 VAL B 13 GLY B 14 LYS B 15 SITE 2 AC3 9 THR B 16 GEO B 302 HOH B 441 HOH B 480 SITE 3 AC3 9 HOH B 507 SITE 1 AC4 15 GLY B 12 VAL B 13 GLY B 14 VAL B 17 SITE 2 AC4 15 GLY B 169 SER B 170 LEU B 196 PRO B 197 SITE 3 AC4 15 GLY B 199 ALA B 200 ALA B 201 SO4 B 301 SITE 4 AC4 15 HOH B 486 HOH B 516 HOH B 541 SITE 1 AC5 5 GLY C 12 VAL C 13 GLY C 14 LYS C 15 SITE 2 AC5 5 THR C 16 SITE 1 AC6 9 GLY D 12 VAL D 13 GLY D 14 LYS D 15 SITE 2 AC6 9 THR D 16 GEO D 302 HOH D 440 HOH D 477 SITE 3 AC6 9 HOH D 484 SITE 1 AC7 12 GLY D 12 VAL D 17 GLY D 169 LEU D 196 SITE 2 AC7 12 PRO D 197 ALA D 198 GLY D 199 ALA D 200 SITE 3 AC7 12 ALA D 201 SO4 D 301 HOH D 402 HOH D 443 CRYST1 55.514 106.076 151.951 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006581 0.00000