HEADER METAL BINDING PROTEIN 08-JAN-19 6NLB TITLE CRYSTAL STRUCTURE OF DE NOVO DESIGNED METAL-CONTROLLED DIMER OF MUTANT TITLE 2 B1 IMMUNOGLOBULIN-BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G (L12H, TITLE 3 E15V, T16L, T18I, V29H, Y33H, N37L)-APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: IGG-BINDING PROTEIN G; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS; SOURCE 3 ORGANISM_TAXID: 1301; SOURCE 4 GENE: SPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS METAL-MEDIATED COMPLEX, B1 DOMAIN OF STREPTOCOCCAL PROTEIN G, KEYWDS 2 IMMUNOGLOBULIN BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.MANIACI,B.STEC,T.HUXFORD REVDAT 5 25-OCT-23 6NLB 1 REMARK REVDAT 4 03-MAY-23 6NLB 1 AUTHOR LINK REVDAT 3 15-MAY-19 6NLB 1 AUTHOR REVDAT 2 08-MAY-19 6NLB 1 JRNL REVDAT 1 23-JAN-19 6NLB 0 JRNL AUTH B.MANIACI,C.H.LIPPER,D.L.ANIPINDI,H.ERLANDSEN,J.L.COLE, JRNL AUTH 2 B.STEC,T.HUXFORD,J.J.LOVE JRNL TITL DESIGN OF HIGH-AFFINITY METAL-CONTROLLED PROTEIN DIMERS. JRNL REF BIOCHEMISTRY V. 58 2199 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 30938154 JRNL DOI 10.1021/ACS.BIOCHEM.9B00055 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 7581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.4830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.62000 REMARK 3 B22 (A**2) : -5.62000 REMARK 3 B33 (A**2) : 11.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.300 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1788 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1676 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2424 ; 2.246 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3868 ; 1.126 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 9.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;42.087 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;19.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2004 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 388 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 892 ; 1.409 ; 2.440 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 891 ; 1.407 ; 2.438 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1108 ; 2.481 ; 3.650 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1109 ; 2.480 ; 3.653 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 896 ; 1.146 ; 2.479 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 893 ; 1.146 ; 2.472 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1315 ; 1.987 ; 3.676 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2038 ; 6.039 ;18.797 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2020 ; 5.577 ;18.685 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.520 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4132 6.6826 -0.2381 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.2005 REMARK 3 T33: 0.0341 T12: 0.0282 REMARK 3 T13: -0.0241 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.6301 L22: 1.0549 REMARK 3 L33: 0.4554 L12: 1.0800 REMARK 3 L13: -0.5502 L23: -0.1524 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.0601 S13: -0.0611 REMARK 3 S21: 0.0048 S22: -0.0302 S23: -0.1100 REMARK 3 S31: -0.0455 S32: -0.0232 S33: 0.0853 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): -26.5700 9.7003 -16.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.2438 REMARK 3 T33: 0.0361 T12: -0.0045 REMARK 3 T13: -0.0186 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.0351 L22: 1.4336 REMARK 3 L33: 0.7718 L12: 0.0355 REMARK 3 L13: -0.1272 L23: -0.3277 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.0200 S13: 0.0068 REMARK 3 S21: 0.0644 S22: -0.0011 S23: 0.0987 REMARK 3 S31: 0.0500 S32: 0.0996 S33: 0.0408 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 56 REMARK 3 ORIGIN FOR THE GROUP (A): -25.4066 -9.8810 -13.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1658 REMARK 3 T33: 0.2806 T12: 0.0173 REMARK 3 T13: -0.0181 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 3.6394 L22: 4.8913 REMARK 3 L33: 0.1600 L12: 1.2071 REMARK 3 L13: 0.7237 L23: 0.3890 REMARK 3 S TENSOR REMARK 3 S11: -0.0971 S12: 0.1777 S13: 0.6271 REMARK 3 S21: -0.0957 S22: -0.0413 S23: 1.0490 REMARK 3 S31: 0.0004 S32: 0.0708 S33: 0.1383 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 56 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8736 -2.2119 -4.2275 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.2262 REMARK 3 T33: 0.4078 T12: -0.0336 REMARK 3 T13: 0.0634 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.3907 L22: 2.5918 REMARK 3 L33: 0.2427 L12: -0.3278 REMARK 3 L13: 0.1865 L23: -0.7739 REMARK 3 S TENSOR REMARK 3 S11: -0.3651 S12: -0.0324 S13: -0.4860 REMARK 3 S21: -0.0434 S22: 0.1426 S23: -0.8579 REMARK 3 S31: 0.0007 S32: -0.0867 S33: 0.2225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000237580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3-7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 20.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PGA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% PEG 4,000 0.1M TRIS PH 8.5 200MM REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.05600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.11200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 22 OG1 THR B 25 2.11 REMARK 500 OD2 ASP D 22 O HOH D 101 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 16 CA - CB - CG ANGL. DEV. = 21.3 DEGREES REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LYS B 4 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU B 7 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 LEU B 16 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 VAL B 21 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 8 66.13 -106.03 REMARK 500 ASP D 36 -7.87 -56.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 14 VAL B 15 149.38 REMARK 500 GLY C 38 VAL C 39 -147.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 212 O REMARK 620 2 HOH A 226 O 110.4 REMARK 620 3 HOH C 103 O 90.4 129.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 104 O REMARK 620 2 HOH B 111 O 69.2 REMARK 620 3 HOH B 120 O 97.1 104.9 REMARK 620 4 ASP D 36 OD2 9.2 71.0 105.5 REMARK 620 5 HOH D 105 O 74.8 131.3 111.2 68.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 DBREF 6NLB A 2 56 UNP P19909 SPG2_STRSG 303 357 DBREF 6NLB B 2 56 UNP P19909 SPG2_STRSG 303 357 DBREF 6NLB C 2 56 UNP P19909 SPG2_STRSG 303 357 DBREF 6NLB D 2 56 UNP P19909 SPG2_STRSG 303 357 SEQADV 6NLB MET A 1 UNP P19909 INITIATING METHIONINE SEQADV 6NLB HIS A 12 UNP P19909 LEU 313 ENGINEERED MUTATION SEQADV 6NLB VAL A 15 UNP P19909 GLU 316 ENGINEERED MUTATION SEQADV 6NLB LEU A 16 UNP P19909 THR 317 ENGINEERED MUTATION SEQADV 6NLB ILE A 18 UNP P19909 THR 319 ENGINEERED MUTATION SEQADV 6NLB HIS A 29 UNP P19909 VAL 330 ENGINEERED MUTATION SEQADV 6NLB HIS A 33 UNP P19909 TYR 334 ENGINEERED MUTATION SEQADV 6NLB LEU A 37 UNP P19909 ASN 338 ENGINEERED MUTATION SEQADV 6NLB MET B 1 UNP P19909 INITIATING METHIONINE SEQADV 6NLB HIS B 12 UNP P19909 LEU 313 ENGINEERED MUTATION SEQADV 6NLB VAL B 15 UNP P19909 GLU 316 ENGINEERED MUTATION SEQADV 6NLB LEU B 16 UNP P19909 THR 317 ENGINEERED MUTATION SEQADV 6NLB ILE B 18 UNP P19909 THR 319 ENGINEERED MUTATION SEQADV 6NLB HIS B 29 UNP P19909 VAL 330 ENGINEERED MUTATION SEQADV 6NLB HIS B 33 UNP P19909 TYR 334 ENGINEERED MUTATION SEQADV 6NLB LEU B 37 UNP P19909 ASN 338 ENGINEERED MUTATION SEQADV 6NLB MET C 1 UNP P19909 INITIATING METHIONINE SEQADV 6NLB HIS C 12 UNP P19909 LEU 313 ENGINEERED MUTATION SEQADV 6NLB VAL C 15 UNP P19909 GLU 316 ENGINEERED MUTATION SEQADV 6NLB LEU C 16 UNP P19909 THR 317 ENGINEERED MUTATION SEQADV 6NLB ILE C 18 UNP P19909 THR 319 ENGINEERED MUTATION SEQADV 6NLB HIS C 29 UNP P19909 VAL 330 ENGINEERED MUTATION SEQADV 6NLB HIS C 33 UNP P19909 TYR 334 ENGINEERED MUTATION SEQADV 6NLB LEU C 37 UNP P19909 ASN 338 ENGINEERED MUTATION SEQADV 6NLB MET D 1 UNP P19909 INITIATING METHIONINE SEQADV 6NLB HIS D 12 UNP P19909 LEU 313 ENGINEERED MUTATION SEQADV 6NLB VAL D 15 UNP P19909 GLU 316 ENGINEERED MUTATION SEQADV 6NLB LEU D 16 UNP P19909 THR 317 ENGINEERED MUTATION SEQADV 6NLB ILE D 18 UNP P19909 THR 319 ENGINEERED MUTATION SEQADV 6NLB HIS D 29 UNP P19909 VAL 330 ENGINEERED MUTATION SEQADV 6NLB HIS D 33 UNP P19909 TYR 334 ENGINEERED MUTATION SEQADV 6NLB LEU D 37 UNP P19909 ASN 338 ENGINEERED MUTATION SEQRES 1 A 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR HIS LYS SEQRES 2 A 56 GLY VAL LEU THR ILE GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 56 GLU LYS HIS PHE LYS GLN HIS ALA ASN ASP LEU GLY VAL SEQRES 4 A 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 56 THR VAL THR GLU SEQRES 1 B 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR HIS LYS SEQRES 2 B 56 GLY VAL LEU THR ILE GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 B 56 GLU LYS HIS PHE LYS GLN HIS ALA ASN ASP LEU GLY VAL SEQRES 4 B 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 B 56 THR VAL THR GLU SEQRES 1 C 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR HIS LYS SEQRES 2 C 56 GLY VAL LEU THR ILE GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 C 56 GLU LYS HIS PHE LYS GLN HIS ALA ASN ASP LEU GLY VAL SEQRES 4 C 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 C 56 THR VAL THR GLU SEQRES 1 D 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR HIS LYS SEQRES 2 D 56 GLY VAL LEU THR ILE GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 D 56 GLU LYS HIS PHE LYS GLN HIS ALA ASN ASP LEU GLY VAL SEQRES 4 D 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 D 56 THR VAL THR GLU HET MG A 101 1 HET MG A 102 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *88(H2 O) HELIX 1 AA1 ASP A 22 GLY A 38 1 17 HELIX 2 AA2 ASP B 22 LEU B 37 1 16 HELIX 3 AA3 ASP C 22 GLY C 38 1 17 HELIX 4 AA4 ASP D 22 ASP D 36 1 15 SHEET 1 AA1 8 GLU A 42 ASP A 46 0 SHEET 2 AA1 8 THR A 51 THR A 55 -1 O THR A 55 N GLU A 42 SHEET 3 AA1 8 THR A 2 ASN A 8 1 N LYS A 4 O PHE A 52 SHEET 4 AA1 8 HIS A 12 GLU A 19 -1 O LEU A 16 N LEU A 5 SHEET 5 AA1 8 HIS B 12 GLU B 19 -1 O THR B 17 N LYS A 13 SHEET 6 AA1 8 THR B 2 ASN B 8 -1 N TYR B 3 O ILE B 18 SHEET 7 AA1 8 THR B 51 THR B 55 1 O PHE B 52 N LYS B 4 SHEET 8 AA1 8 GLU B 42 ASP B 46 -1 N GLU B 42 O THR B 55 SHEET 1 AA2 8 GLU C 42 ASP C 46 0 SHEET 2 AA2 8 THR C 51 THR C 55 -1 O THR C 53 N THR C 44 SHEET 3 AA2 8 THR C 2 ASN C 8 1 N LYS C 4 O PHE C 52 SHEET 4 AA2 8 LYS C 13 GLU C 19 -1 O ILE C 18 N TYR C 3 SHEET 5 AA2 8 LYS D 13 GLU D 19 -1 O LYS D 13 N THR C 17 SHEET 6 AA2 8 THR D 2 ASN D 8 -1 N LEU D 5 O LEU D 16 SHEET 7 AA2 8 THR D 51 THR D 55 1 O VAL D 54 N ASN D 8 SHEET 8 AA2 8 GLU D 42 ASP D 46 -1 N ASP D 46 O THR D 51 LINK MG MG A 101 O HOH A 212 1555 1555 2.18 LINK MG MG A 101 O HOH A 226 1555 1555 1.98 LINK MG MG A 101 O HOH C 103 1555 1665 2.20 LINK MG MG A 102 O HOH B 104 1555 1555 2.31 LINK MG MG A 102 O HOH B 111 1555 1555 2.17 LINK MG MG A 102 O HOH B 120 1555 1555 2.31 LINK MG MG A 102 OD2 ASP D 36 1445 1555 2.72 LINK MG MG A 102 O HOH D 105 1555 1665 1.95 SITE 1 AC1 4 HOH A 212 HOH A 226 GLN C 32 HOH C 103 SITE 1 AC2 6 HOH B 104 HOH B 111 HOH B 120 GLN D 32 SITE 2 AC2 6 ASP D 36 HOH D 105 CRYST1 42.892 42.892 102.168 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023314 0.013461 0.000000 0.00000 SCALE2 0.000000 0.026921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009788 0.00000