HEADER IMMUNE SYSTEM 11-JAN-19 6NMV TITLE NON-BLOCKING FAB 218 ANTI-SIRP-ALPHA ANTIBODY IN COMPLEX WITH SIRP- TITLE 2 ALPHA VARIANT 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE SUBSTRATE 1; COMPND 3 CHAIN: S; COMPND 4 SYNONYM: SHPS-1,BRAIN IG-LIKE MOLECULE WITH TYROSINE-BASED ACTIVATION COMPND 5 MOTIFS,BIT,CD172 ANTIGEN-LIKE FAMILY MEMBER A,INHIBITORY RECEPTOR COMPND 6 SHPS-1,MACROPHAGE FUSION RECEPTOR,MYD-1 ANTIGEN,SIGNAL-REGULATORY COMPND 7 PROTEIN ALPHA-1,SIRP-ALPHA-1,SIGNAL-REGULATORY PROTEIN ALPHA-2,SIRP- COMPND 8 ALPHA-2,SIGNAL-REGULATORY PROTEIN ALPHA-3,SIRP-ALPHA-3,P84; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: FAB 218 ANTI-SIRP-ALPHA ANTIBODY VARIABLE HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: FAB 218 ANTI-SIRP-ALPHA ANTIBODY VARIABLE LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRPA, BIT, MFR, MYD1, PTPNS1, SHPS1, SIRP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SIRP-ALPHA, SIGNAL REGULATORY PROTEIN ALPHA, SIGNAL-REGULATORY KEYWDS 2 PROTEIN ALPHA, TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE KEYWDS 3 SUBSTRATE 1, CD47, CLUSTER OF DIFFERENTIATION 47, ANTI-SIRP-ALPHA KEYWDS 4 ANTIBODY, BLOCKING ANTI-SIRP-ALPHA ANTIBODY, NON-BLOCKING ANTI-SIRP- KEYWDS 5 ALPHA ANTIBODY, KICK-OFF ANTI-SIRP-ALPHA ANTIBODY, ANTI-SIRP-ALPHA KEYWDS 6 ANTIBODY IN COMPLEX WITH SIRP-ALPHA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.S.WIBOWO,J.J.CARTER,J.SIM REVDAT 2 14-AUG-19 6NMV 1 JRNL REVDAT 1 07-AUG-19 6NMV 0 JRNL AUTH J.SIM,J.T.SOCKOLOSKY,E.SANGALANG,S.IZQUIERDO,D.PEDERSEN, JRNL AUTH 2 W.HARRIMAN,A.S.WIBOWO,J.CARTER,A.MADAN,L.DOYLE,O.HARRABI, JRNL AUTH 3 S.E.KAUDER,A.CHEN,T.C.KUO,H.WAN,J.PONS JRNL TITL DISCOVERY OF HIGH AFFINITY, PAN-ALLELIC, AND PAN-MAMMALIAN JRNL TITL 2 REACTIVE ANTIBODIES AGAINST THE MYELOID CHECKPOINT RECEPTOR JRNL TITL 3 SIRP ALPHA. JRNL REF MABS V. 11 1036 2019 JRNL REFN ESSN 1942-0870 JRNL PMID 31257988 JRNL DOI 10.1080/19420862.2019.1624123 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 13589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -3.23000 REMARK 3 B33 (A**2) : 2.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.460 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4037 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3583 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5511 ; 1.479 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8413 ; 0.862 ; 1.636 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 523 ; 9.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.135 ;22.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 618 ;19.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4531 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 741 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97923 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 38.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M MGCL2, 25% W/V REMARK 280 PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.04500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU S 1 REMARK 465 GLU S 2 REMARK 465 SER S 119 REMARK 465 THR S 120 REMARK 465 ARG S 121 REMARK 465 HIS S 122 REMARK 465 HIS S 123 REMARK 465 HIS S 124 REMARK 465 HIS S 125 REMARK 465 HIS S 126 REMARK 465 HIS S 127 REMARK 465 SER H 128 REMARK 465 SER H 129 REMARK 465 LYS H 130 REMARK 465 SER H 131 REMARK 465 THR H 132 REMARK 465 SER H 133 REMARK 465 GLY H 134 REMARK 465 GLY H 135 REMARK 465 THR H 136 REMARK 465 ALA H 137 REMARK 465 SER H 216 REMARK 465 CYS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 CYS L 207 REMARK 465 SER L 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN L 180 OH TYR L 187 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN S 70 44.06 -96.24 REMARK 500 ALA S 84 30.41 -84.43 REMARK 500 SER S 98 -63.12 -133.05 REMARK 500 ASP S 100 140.29 105.39 REMARK 500 ASP S 101 88.52 65.48 REMARK 500 PHE S 104 -68.51 -96.03 REMARK 500 SER H 31 41.09 -99.19 REMARK 500 GLU H 43 -165.87 -129.19 REMARK 500 VAL H 48 -50.74 -122.93 REMARK 500 SER H 63 -50.43 -26.98 REMARK 500 LEU H 81 93.99 -172.91 REMARK 500 ASP H 99 -97.16 46.97 REMARK 500 ASP H 145 64.48 64.39 REMARK 500 SER H 157 -142.53 57.58 REMARK 500 THR H 161 -29.52 -146.01 REMARK 500 THR H 192 -84.37 -87.83 REMARK 500 HIS H 201 82.65 -150.96 REMARK 500 ASN L 46 -61.05 84.79 REMARK 500 ASN L 47 15.64 -141.10 REMARK 500 SER L 64 41.86 -103.56 REMARK 500 GLU L 78 107.53 -48.53 REMARK 500 ALA L 79 -169.22 -170.48 REMARK 500 GLN L 104 114.55 72.57 REMARK 500 ASP L 147 -115.38 54.20 REMARK 500 PRO L 150 146.72 -36.16 REMARK 500 GLN L 163 -172.87 -68.47 REMARK 500 ARG L 185 -75.07 -46.86 REMARK 500 SER L 186 115.36 -162.29 REMARK 500 HIS L 193 94.41 -165.00 REMARK 500 GLU L 194 44.92 73.08 REMARK 500 PRO L 204 71.76 -65.26 REMARK 500 THR L 205 119.54 -166.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO S 99 ASP S 100 137.21 REMARK 500 THR H 98 ASP H 99 146.40 REMARK 500 VAL H 143 LYS H 144 -146.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG S 95 0.10 SIDE CHAIN REMARK 500 ARG L 56 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NMR RELATED DB: PDB REMARK 900 BLOCKING FAB 119 ANTI-SIRP-ALPHA ANTIBODY IN COMPLEX WITH SIRP- REMARK 900 ALPHA VARIANT 1 REMARK 900 RELATED ID: 6NMS RELATED DB: PDB REMARK 900 NON-BLOCKING FAB 136 ANTI-SIRP-ALPHA ANTIBODY IN COMPLEX WITH SIRP- REMARK 900 ALPHA VARIANT 1 REMARK 900 RELATED ID: 6NMT RELATED DB: PDB REMARK 900 NON-BLOCKING FAB 3 ANTI-SIRP-ALPHA ANTIBODY IN COMPLEX WITH SIRP- REMARK 900 ALPHA VARIANT 1 REMARK 900 RELATED ID: 6NMU RELATED DB: PDB REMARK 900 KICK-OFF FAB 115 ANTI-SIRP-ALPHA ANTIBODY IN COMPLEX WITH SIRP- REMARK 900 ALPHA VARIANT 1 DBREF 6NMV S 1 119 UNP P78324 SHPS1_HUMAN 31 149 DBREF 6NMV H 1 223 PDB 6NMV 6NMV 1 223 DBREF 6NMV L 1 208 PDB 6NMV 6NMV 1 208 SEQADV 6NMV ALA S 80 UNP P78324 ASN 110 CONFLICT SEQADV 6NMV THR S 120 UNP P78324 EXPRESSION TAG SEQADV 6NMV ARG S 121 UNP P78324 EXPRESSION TAG SEQADV 6NMV HIS S 122 UNP P78324 EXPRESSION TAG SEQADV 6NMV HIS S 123 UNP P78324 EXPRESSION TAG SEQADV 6NMV HIS S 124 UNP P78324 EXPRESSION TAG SEQADV 6NMV HIS S 125 UNP P78324 EXPRESSION TAG SEQADV 6NMV HIS S 126 UNP P78324 EXPRESSION TAG SEQADV 6NMV HIS S 127 UNP P78324 EXPRESSION TAG SEQRES 1 S 127 GLU GLU GLU LEU GLN VAL ILE GLN PRO ASP LYS SER VAL SEQRES 2 S 127 LEU VAL ALA ALA GLY GLU THR ALA THR LEU ARG CYS THR SEQRES 3 S 127 ALA THR SER LEU ILE PRO VAL GLY PRO ILE GLN TRP PHE SEQRES 4 S 127 ARG GLY ALA GLY PRO GLY ARG GLU LEU ILE TYR ASN GLN SEQRES 5 S 127 LYS GLU GLY HIS PHE PRO ARG VAL THR THR VAL SER ASP SEQRES 6 S 127 LEU THR LYS ARG ASN ASN MET ASP PHE SER ILE ARG ILE SEQRES 7 S 127 GLY ALA ILE THR PRO ALA ASP ALA GLY THR TYR TYR CYS SEQRES 8 S 127 VAL LYS PHE ARG LYS GLY SER PRO ASP ASP VAL GLU PHE SEQRES 9 S 127 LYS SER GLY ALA GLY THR GLU LEU SER VAL ARG ALA LYS SEQRES 10 S 127 PRO SER THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 H 223 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL ARG SEQRES 2 H 223 PRO GLY GLU SER LEU THR LEU SER CYS THR ALA SER GLY SEQRES 3 H 223 PHE THR PHE THR SER SER THR MET ASN TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY GLU GLY LEU ASP TRP VAL SER SER ILE SER SEQRES 5 H 223 THR SER GLY VAL ILE THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 223 GLY ARG ALA THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 223 LEU TYR LEU ARG LEU PHE SER LEU ARG ALA ASP ASP THR SEQRES 8 H 223 ALA ILE TYR TYR CYS ALA THR ASP THR PHE ASP HIS TRP SEQRES 9 H 223 GLY PRO GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 10 H 223 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 11 H 223 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 12 H 223 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 13 H 223 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 223 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 15 H 223 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 16 H 223 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 17 H 223 ASP LYS LYS VAL GLU PRO LYS SER CYS HIS HIS HIS HIS SEQRES 18 H 223 HIS HIS SEQRES 1 L 208 ALA LEU THR GLN PRO ALA SER VAL SER ALA ASN PRO GLY SEQRES 2 L 208 GLU THR VAL LYS ILE THR CYS PHE GLY SER SER GLY ASN SEQRES 3 L 208 TYR GLY TRP PHE GLN GLN LYS SER PRO GLY SER ALA PRO SEQRES 4 L 208 VAL THR VAL ILE HIS TYR ASN ASN LYS ARG PRO SER ASP SEQRES 5 L 208 ILE PRO SER ARG PHE SER GLY SER LYS SER GLY SER THR SEQRES 6 L 208 GLY THR LEU THR ILE THR GLY VAL ARG ALA GLU ASP GLU SEQRES 7 L 208 ALA VAL TYR PHE CYS GLY ALA TRP GLU THR GLY SER ALA SEQRES 8 L 208 THR PHE GLY ALA GLY THR THR LEU THR VAL LEU GLY GLN SEQRES 9 L 208 PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SEQRES 10 L 208 SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS SEQRES 11 L 208 LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA SEQRES 12 L 208 TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU SEQRES 13 L 208 THR THR THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA SEQRES 14 L 208 ALA SER SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SEQRES 15 L 208 SER HIS ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SEQRES 16 L 208 SER THR VAL GLU LYS THR VAL ALA PRO THR GLU CYS SER FORMUL 4 HOH *20(H2 O) HELIX 1 AA1 THR S 82 ALA S 86 5 5 HELIX 2 AA2 THR H 28 SER H 32 5 5 HELIX 3 AA3 ASN H 74 LYS H 76 5 3 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 157 LEU H 160 5 4 HELIX 6 AA6 LYS H 202 ASN H 205 5 4 HELIX 7 AA7 SER L 117 ALA L 123 1 7 HELIX 8 AA8 THR L 177 SER L 183 1 7 SHEET 1 AA1 2 VAL S 6 ILE S 7 0 SHEET 2 AA1 2 THR S 26 ALA S 27 -1 O THR S 26 N ILE S 7 SHEET 1 AA2 5 SER S 12 ALA S 16 0 SHEET 2 AA2 5 THR S 110 ARG S 115 1 O SER S 113 N VAL S 15 SHEET 3 AA2 5 GLY S 87 ARG S 95 -1 N GLY S 87 O LEU S 112 SHEET 4 AA2 5 ILE S 36 ARG S 40 -1 N GLN S 37 O VAL S 92 SHEET 5 AA2 5 GLU S 47 ASN S 51 -1 O ILE S 49 N TRP S 38 SHEET 1 AA3 4 SER S 12 ALA S 16 0 SHEET 2 AA3 4 THR S 110 ARG S 115 1 O SER S 113 N VAL S 15 SHEET 3 AA3 4 GLY S 87 ARG S 95 -1 N GLY S 87 O LEU S 112 SHEET 4 AA3 4 VAL S 102 SER S 106 -1 O LYS S 105 N LYS S 93 SHEET 1 AA4 3 ALA S 21 LEU S 23 0 SHEET 2 AA4 3 ILE S 76 ILE S 78 -1 O ILE S 78 N ALA S 21 SHEET 3 AA4 3 VAL S 60 THR S 62 -1 N THR S 61 O ARG S 77 SHEET 1 AA5 4 GLN H 3 SER H 7 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O THR H 23 N VAL H 5 SHEET 3 AA5 4 THR H 78 LEU H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 AA5 4 ALA H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA6 6 VAL H 11 VAL H 12 0 SHEET 2 AA6 6 THR H 108 VAL H 112 1 O THR H 111 N VAL H 12 SHEET 3 AA6 6 ALA H 92 THR H 98 -1 N ALA H 92 O VAL H 110 SHEET 4 AA6 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA6 6 ASP H 46 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 AA6 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 50 SHEET 1 AA7 4 SER H 121 LEU H 125 0 SHEET 2 AA7 4 LEU H 139 TYR H 146 -1 O LEU H 142 N PHE H 123 SHEET 3 AA7 4 TYR H 177 VAL H 183 -1 O TYR H 177 N TYR H 146 SHEET 4 AA7 4 VAL H 164 THR H 166 -1 N HIS H 165 O VAL H 182 SHEET 1 AA8 4 SER H 121 LEU H 125 0 SHEET 2 AA8 4 LEU H 139 TYR H 146 -1 O LEU H 142 N PHE H 123 SHEET 3 AA8 4 TYR H 177 VAL H 183 -1 O TYR H 177 N TYR H 146 SHEET 4 AA8 4 VAL H 170 LEU H 171 -1 N VAL H 170 O SER H 178 SHEET 1 AA9 3 THR H 152 TRP H 155 0 SHEET 2 AA9 3 ILE H 196 HIS H 201 -1 O ASN H 198 N SER H 154 SHEET 3 AA9 3 THR H 206 LYS H 211 -1 O LYS H 210 N CYS H 197 SHEET 1 AB1 5 SER L 7 ALA L 10 0 SHEET 2 AB1 5 THR L 97 VAL L 101 1 O THR L 100 N ALA L 10 SHEET 3 AB1 5 ALA L 79 GLU L 87 -1 N ALA L 79 O LEU L 99 SHEET 4 AB1 5 ASN L 26 GLN L 32 -1 N GLY L 28 O GLY L 84 SHEET 5 AB1 5 VAL L 40 ILE L 43 -1 O VAL L 40 N GLN L 31 SHEET 1 AB2 4 SER L 7 ALA L 10 0 SHEET 2 AB2 4 THR L 97 VAL L 101 1 O THR L 100 N ALA L 10 SHEET 3 AB2 4 ALA L 79 GLU L 87 -1 N ALA L 79 O LEU L 99 SHEET 4 AB2 4 SER L 90 PHE L 93 -1 O THR L 92 N ALA L 85 SHEET 1 AB3 3 THR L 15 PHE L 21 0 SHEET 2 AB3 3 THR L 65 THR L 71 -1 O GLY L 66 N CYS L 20 SHEET 3 AB3 3 PHE L 57 SER L 62 -1 N SER L 58 O THR L 69 SHEET 1 AB4 4 SER L 110 PHE L 114 0 SHEET 2 AB4 4 ALA L 126 PHE L 135 -1 O LEU L 131 N THR L 112 SHEET 3 AB4 4 TYR L 168 LEU L 176 -1 O ALA L 170 N ILE L 132 SHEET 4 AB4 4 VAL L 155 THR L 157 -1 N GLU L 156 O TYR L 173 SHEET 1 AB5 4 SER L 110 PHE L 114 0 SHEET 2 AB5 4 ALA L 126 PHE L 135 -1 O LEU L 131 N THR L 112 SHEET 3 AB5 4 TYR L 168 LEU L 176 -1 O ALA L 170 N ILE L 132 SHEET 4 AB5 4 SER L 161 LYS L 162 -1 N SER L 161 O ALA L 169 SHEET 1 AB6 4 SER L 149 VAL L 151 0 SHEET 2 AB6 4 THR L 141 ALA L 146 -1 N ALA L 146 O SER L 149 SHEET 3 AB6 4 SER L 188 THR L 192 -1 O SER L 188 N LYS L 145 SHEET 4 AB6 4 THR L 197 THR L 201 -1 O VAL L 198 N VAL L 191 SSBOND 1 CYS S 25 CYS S 91 1555 1555 2.06 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 3 CYS H 141 CYS H 197 1555 1555 2.09 SSBOND 4 CYS L 20 CYS L 83 1555 1555 2.08 SSBOND 5 CYS L 130 CYS L 189 1555 1555 2.07 CISPEP 1 ILE S 31 PRO S 32 0 15.94 CISPEP 2 PHE H 147 PRO H 148 0 -11.98 CISPEP 3 GLU H 149 PRO H 150 0 -9.89 CISPEP 4 TYR L 136 PRO L 137 0 -7.61 CRYST1 44.290 76.090 72.810 90.00 95.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022578 0.000000 0.002079 0.00000 SCALE2 0.000000 0.013142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013792 0.00000