HEADER LIGASE 15-JAN-19 6NO3 TITLE ADP BOUND TO V113BL MUTANT ATP-GRASP FOLD OF BLASTOCYSTIS HOMINIS TITLE 2 SUCCINYL-COA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 16-253; COMPND 5 SYNONYM: SUCCINYL-COA SYNTHETASE BETA CHAIN,SCS-BETA; COMPND 6 EC: 6.2.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCYSTIS SP. SUBTYPE 1 (STRAIN ATCC 50177 / SOURCE 3 NANDII); SOURCE 4 ORGANISM_TAXID: 478820; SOURCE 5 STRAIN: ATCC 50177 / NANDII; SOURCE 6 GENE: SCSB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, MUTANT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,M.E.FRASER REVDAT 3 08-JAN-20 6NO3 1 REMARK REVDAT 2 13-NOV-19 6NO3 1 JRNL REVDAT 1 17-JUL-19 6NO3 0 JRNL AUTH J.HUANG,V.H.NGUYEN,K.A.HAMBLIN,R.MAYTUM,M.VAN DER GIEZEN, JRNL AUTH 2 M.E.FRASER JRNL TITL ATP-SPECIFICITY OF SUCCINYL-COA SYNTHETASE FROM BLASTOCYSTIS JRNL TITL 2 HOMINIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 647 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31282474 JRNL DOI 10.1107/S2059798319007976 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3318 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.9527 - 4.9856 1.00 3046 145 0.1884 0.2211 REMARK 3 2 4.9856 - 3.9574 1.00 2922 144 0.1475 0.1588 REMARK 3 3 3.9574 - 3.4572 1.00 2892 150 0.1704 0.1893 REMARK 3 4 3.4572 - 3.1411 1.00 2877 140 0.1810 0.2052 REMARK 3 5 3.1411 - 2.9160 1.00 2868 145 0.1955 0.2119 REMARK 3 6 2.9160 - 2.7440 1.00 2860 128 0.1761 0.1918 REMARK 3 7 2.7440 - 2.6066 1.00 2869 138 0.1696 0.2121 REMARK 3 8 2.6066 - 2.4931 1.00 2850 138 0.1782 0.2264 REMARK 3 9 2.4931 - 2.3972 1.00 2815 150 0.2020 0.2059 REMARK 3 10 2.3972 - 2.3144 1.00 2848 138 0.2081 0.2255 REMARK 3 11 2.3144 - 2.2421 1.00 2847 132 0.2278 0.2456 REMARK 3 12 2.2421 - 2.1780 1.00 2825 141 0.2474 0.2847 REMARK 3 13 2.1780 - 2.1206 1.00 2821 154 0.2845 0.3337 REMARK 3 14 2.1206 - 2.0689 0.99 2790 157 0.3246 0.3456 REMARK 3 15 2.0689 - 2.0219 0.99 2825 137 0.3611 0.3746 REMARK 3 16 2.0219 - 1.9788 1.00 2891 121 0.4072 0.4115 REMARK 3 17 1.9788 - 1.9392 0.99 2760 138 0.4445 0.4980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -11.8698 12.3613 12.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.4095 T22: 0.3925 REMARK 3 T33: 0.4582 T12: 0.0122 REMARK 3 T13: 0.0045 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.4151 L22: 0.8902 REMARK 3 L33: 0.9345 L12: 0.2190 REMARK 3 L13: -0.4568 L23: -0.0476 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.3312 S13: 0.3901 REMARK 3 S21: 0.1207 S22: 0.0199 S23: -0.0190 REMARK 3 S31: -0.0730 S32: -0.0161 S33: -0.0181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 25 OR RESID REMARK 3 30 OR RESID 32 THROUGH 77 OR RESID 79 REMARK 3 THROUGH 102 OR RESID 104 THROUGH 107 OR REMARK 3 RESID 109 THROUGH 123 OR RESID 132 REMARK 3 THROUGH 152 OR RESID 154 THROUGH 156 OR REMARK 3 RESID 158 THROUGH 160 OR RESID 169 REMARK 3 THROUGH 235)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 25 OR RESID REMARK 3 30 OR RESID 32 THROUGH 77 OR RESID 79 REMARK 3 THROUGH 102 OR RESID 104 THROUGH 107 OR REMARK 3 RESID 109 THROUGH 123 OR RESID 132 REMARK 3 THROUGH 152 OR RESID 154 THROUGH 156 OR REMARK 3 RESID 158 THROUGH 160 OR RESID 169 REMARK 3 THROUGH 235)) REMARK 3 ATOM PAIRS NUMBER : 1984 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51125 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.939 REMARK 200 RESOLUTION RANGE LOW (A) : 63.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG3350, 100 MM MES, PH 6.0, REMARK 280 200 MM AMMONIUM TARTRATE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.91800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.91800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.69000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.67250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.69000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.67250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.91800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.69000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.67250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.91800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.69000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.67250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 PHE A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 ASP B 236 REMARK 465 ALA B 237 REMARK 465 ALA B 238 REMARK 465 PHE B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 GLU B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 32 O HOH A 401 1.59 REMARK 500 O HOH B 454 O HOH B 464 1.93 REMARK 500 O HOH A 404 O HOH B 425 2.06 REMARK 500 O HOH A 418 O HOH B 402 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 142 -96.63 57.28 REMARK 500 CYS A 151 86.52 -153.83 REMARK 500 MET B 142 -94.07 55.83 REMARK 500 CYS B 151 88.29 -153.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 491 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 210 O REMARK 620 2 ASP A 228 OD2 103.1 REMARK 620 3 ADP A 301 O3B 160.5 96.3 REMARK 620 4 ADP A 301 O2A 104.9 89.8 73.0 REMARK 620 5 HOH A 403 O 90.2 163.0 70.4 76.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE1 REMARK 620 2 ASP A 220 OD1 81.4 REMARK 620 3 ASP B 220 OD1 131.0 138.7 REMARK 620 4 HOH B 447 O 82.2 98.3 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 210 O REMARK 620 2 ASP B 228 OD2 90.4 REMARK 620 3 ADP B 301 O1B 170.8 94.9 REMARK 620 4 ADP B 301 O2A 98.0 89.0 89.7 REMARK 620 5 HOH B 439 O 81.8 169.3 93.9 84.9 REMARK 620 6 HOH B 448 O 85.2 87.2 87.5 175.1 99.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 DBREF 6NO3 A 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 DBREF 6NO3 B 2 239 UNP B3FHP0 SUCB_BLAHN 16 253 SEQADV 6NO3 MET A 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO3 LEU A 113 UNP B3FHP0 VAL 127 ENGINEERED MUTATION SEQADV 6NO3 GLY A 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 LEU A 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 GLU A 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS A 250 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 MET B 1 UNP B3FHP0 INITIATING METHIONINE SEQADV 6NO3 LEU B 113 UNP B3FHP0 VAL 127 ENGINEERED MUTATION SEQADV 6NO3 GLY B 240 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 LEU B 241 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 GLU B 242 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 243 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 244 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 245 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 246 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 247 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 248 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 249 UNP B3FHP0 EXPRESSION TAG SEQADV 6NO3 HIS B 250 UNP B3FHP0 EXPRESSION TAG SEQRES 1 A 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 A 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 A 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 A 250 ASN GLN PHE PRO GLY CYS LYS PHE VAL VAL LYS ALA GLN SEQRES 5 A 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 A 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 A 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 A 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 A 250 ASN LYS VAL MET VAL CYS GLY ALA LEU LYS ILE LEU LYS SEQRES 10 A 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 A 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 A 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 A 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 A 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 A 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 A 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 A 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 A 250 LYS VAL ILE CYS CYS LEU ASP ALA LYS ILE ALA PHE ASP SEQRES 19 A 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET ASN ILE HIS GLU TRP GLN SER LYS GLN LEU ILE GLN SEQRES 2 B 250 LYS TYR GLY GLY ARG ALA GLN SER GLY GLU VAL ALA PHE SEQRES 3 B 250 SER PRO GLU ARG SER ARG ASP ILE ALA LYS LYS LEU TRP SEQRES 4 B 250 ASN GLN PHE PRO GLY CYS LYS PHE VAL VAL LYS ALA GLN SEQRES 5 B 250 VAL LEU ALA GLY GLY ARG GLY LYS GLY HIS TRP GLU HIS SEQRES 6 B 250 GLY MET GLN GLY GLY VAL LYS LEU ALA LYS THR PRO GLU SEQRES 7 B 250 GLU VAL TYR GLU ILE ALA ASN GLU MET ILE GLY HIS LYS SEQRES 8 B 250 LEU ILE THR LYS GLN THR GLY ALA LYS GLY ILE ASN CYS SEQRES 9 B 250 ASN LYS VAL MET VAL CYS GLY ALA LEU LYS ILE LEU LYS SEQRES 10 B 250 GLU PHE TYR LEU SER ILE LEU LEU ASP ARG ALA MET GLY SEQRES 11 B 250 CYS PRO VAL ILE ILE ALA THR SER GLN GLY GLY MET GLY SEQRES 12 B 250 ILE GLU GLU VAL ALA GLN LYS CYS PRO GLU CYS LEU PHE SEQRES 13 B 250 LYS VAL PRO ILE SER VAL LYS ASN GLY PRO THR ASN GLU SEQRES 14 B 250 GLN LEU VAL LYS LEU ALA LYS ASP LEU GLY LEU GLU GLY SEQRES 15 B 250 ASP LEU VAL GLN ASP CYS VAL ASP ASN VAL LYS ALA LEU SEQRES 16 B 250 TYR GLN VAL PHE ASP LYS CYS ASP SER THR MET VAL GLU SEQRES 17 B 250 ILE ASN PRO LEU GLY VAL ILE GLU THR PRO THR ASP GLU SEQRES 18 B 250 LYS VAL ILE CYS CYS LEU ASP ALA LYS ILE ALA PHE ASP SEQRES 19 B 250 LYS ASP ALA ALA PHE GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS HET ADP A 301 42 HET MG A 302 1 HET MG A 303 1 HET ADP B 301 42 HET MG B 302 1 HET CL B 303 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 3(MG 2+) FORMUL 8 CL CL 1- FORMUL 9 HOH *186(H2 O) HELIX 1 AA1 HIS A 4 TYR A 15 1 12 HELIX 2 AA2 SER A 27 TRP A 39 1 13 HELIX 3 AA3 THR A 76 ILE A 88 1 13 HELIX 4 AA4 THR A 97 GLY A 101 5 5 HELIX 5 AA5 GLY A 143 CYS A 151 1 9 HELIX 6 AA6 PRO A 152 LEU A 155 5 4 HELIX 7 AA7 THR A 167 LEU A 178 1 12 HELIX 8 AA8 GLY A 182 CYS A 202 1 21 HELIX 9 AA9 HIS B 4 TYR B 15 1 12 HELIX 10 AB1 SER B 27 TRP B 39 1 13 HELIX 11 AB2 THR B 76 ILE B 88 1 13 HELIX 12 AB3 THR B 97 GLY B 101 5 5 HELIX 13 AB4 GLY B 143 CYS B 151 1 9 HELIX 14 AB5 PRO B 152 LEU B 155 5 4 HELIX 15 AB6 THR B 167 LEU B 178 1 12 HELIX 16 AB7 ASP B 183 CYS B 202 1 20 SHEET 1 AA1 4 GLU A 23 ALA A 25 0 SHEET 2 AA1 4 VAL A 107 GLY A 111 -1 O VAL A 107 N ALA A 25 SHEET 3 AA1 4 PHE A 47 ALA A 51 -1 N VAL A 48 O CYS A 110 SHEET 4 AA1 4 VAL A 71 ALA A 74 -1 O ALA A 74 N PHE A 47 SHEET 1 AA2 3 HIS A 62 TRP A 63 0 SHEET 2 AA2 3 HIS A 90 ILE A 93 -1 O ILE A 93 N HIS A 62 SHEET 3 AA2 3 ILE A 102 CYS A 104 -1 O ILE A 102 N LEU A 92 SHEET 1 AA3 5 PHE A 156 PRO A 159 0 SHEET 2 AA3 5 CYS A 131 THR A 137 -1 N ALA A 136 O PHE A 156 SHEET 3 AA3 5 LYS A 114 ASP A 126 -1 N SER A 122 O ILE A 135 SHEET 4 AA3 5 MET A 206 GLU A 216 -1 O LEU A 212 N PHE A 119 SHEET 5 AA3 5 LYS A 222 CYS A 226 -1 O CYS A 225 N GLY A 213 SHEET 1 AA4 5 PHE A 156 PRO A 159 0 SHEET 2 AA4 5 CYS A 131 THR A 137 -1 N ALA A 136 O PHE A 156 SHEET 3 AA4 5 LYS A 114 ASP A 126 -1 N SER A 122 O ILE A 135 SHEET 4 AA4 5 MET A 206 GLU A 216 -1 O LEU A 212 N PHE A 119 SHEET 5 AA4 5 LYS A 230 ALA A 232 -1 O LYS A 230 N GLU A 208 SHEET 1 AA5 6 ASN B 2 ILE B 3 0 SHEET 2 AA5 6 LYS B 230 ALA B 232 -1 O ILE B 231 N ILE B 3 SHEET 3 AA5 6 MET B 206 GLU B 216 -1 N GLU B 208 O LYS B 230 SHEET 4 AA5 6 LYS B 114 ASP B 126 -1 N LEU B 121 O ILE B 209 SHEET 5 AA5 6 CYS B 131 THR B 137 -1 O ILE B 135 N SER B 122 SHEET 6 AA5 6 PHE B 156 PRO B 159 -1 O PHE B 156 N ALA B 136 SHEET 1 AA6 4 ASN B 2 ILE B 3 0 SHEET 2 AA6 4 LYS B 230 ALA B 232 -1 O ILE B 231 N ILE B 3 SHEET 3 AA6 4 MET B 206 GLU B 216 -1 N GLU B 208 O LYS B 230 SHEET 4 AA6 4 LYS B 222 CYS B 226 -1 O CYS B 225 N GLY B 213 SHEET 1 AA7 4 GLU B 23 ALA B 25 0 SHEET 2 AA7 4 VAL B 107 GLY B 111 -1 O VAL B 109 N GLU B 23 SHEET 3 AA7 4 PHE B 47 ALA B 51 -1 N VAL B 48 O CYS B 110 SHEET 4 AA7 4 VAL B 71 ALA B 74 -1 O ALA B 74 N PHE B 47 SHEET 1 AA8 3 HIS B 62 TRP B 63 0 SHEET 2 AA8 3 HIS B 90 ILE B 93 -1 O ILE B 93 N HIS B 62 SHEET 3 AA8 3 ILE B 102 CYS B 104 -1 O ILE B 102 N LEU B 92 SSBOND 1 CYS A 151 CYS A 154 1555 1555 2.03 SSBOND 2 CYS B 151 CYS B 154 1555 1555 2.03 LINK O ASN A 210 MG MG A 302 1555 1555 2.17 LINK OE1 GLU A 216 MG MG A 303 1555 1555 2.99 LINK OD1 ASP A 220 MG MG A 303 1555 1555 2.13 LINK OD2 ASP A 228 MG MG A 302 1555 1555 2.13 LINK O ASN B 210 MG MG B 302 1555 1555 2.15 LINK OD1 ASP B 220 MG MG A 303 1555 1555 2.18 LINK OD2 ASP B 228 MG MG B 302 1555 1555 2.24 LINK O3B ADP A 301 MG MG A 302 1555 1555 2.21 LINK O2A ADP A 301 MG MG A 302 1555 1555 2.20 LINK MG MG A 302 O HOH A 403 1555 1555 2.07 LINK MG MG A 303 O HOH B 447 1555 1555 2.08 LINK O1B ADP B 301 MG MG B 302 1555 1555 2.05 LINK O2A ADP B 301 MG MG B 302 1555 1555 2.16 LINK MG MG B 302 O HOH B 439 1555 1555 2.10 LINK MG MG B 302 O HOH B 448 1555 1555 2.09 CISPEP 1 ASN A 210 PRO A 211 0 4.71 CISPEP 2 ASN B 210 PRO B 211 0 5.00 SITE 1 AC1 14 GLN A 20 VAL A 48 LYS A 50 ARG A 58 SITE 2 AC1 14 GLY A 59 GLY A 111 LEU A 113 ILE A 115 SITE 3 AC1 14 GLU A 118 ASN A 210 ASP A 228 MG A 302 SITE 4 AC1 14 HOH A 403 HOH A 442 SITE 1 AC2 4 ASN A 210 ASP A 228 ADP A 301 HOH A 403 SITE 1 AC3 4 GLU A 216 ASP A 220 ASP B 220 HOH B 447 SITE 1 AC4 22 GLN B 20 VAL B 48 LYS B 50 GLY B 57 SITE 2 AC4 22 ARG B 58 GLY B 59 GLY B 111 ALA B 112 SITE 3 AC4 22 LEU B 113 ILE B 115 GLU B 118 ASN B 210 SITE 4 AC4 22 PRO B 211 LEU B 227 ASP B 228 MG B 302 SITE 5 AC4 22 HOH B 419 HOH B 424 HOH B 439 HOH B 448 SITE 6 AC4 22 HOH B 449 HOH B 450 SITE 1 AC5 5 ASN B 210 ASP B 228 ADP B 301 HOH B 439 SITE 2 AC5 5 HOH B 448 SITE 1 AC6 2 HOH B 451 HOH B 492 CRYST1 91.380 117.345 127.836 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007823 0.00000