HEADER TRANSFERASE 15-JAN-19 6NO9 TITLE PIM1 IN COMPLEX WITH CPD16 (5-AMINO-N-(5-((4R,5R)-4-AMINO-5- TITLE 2 FLUOROAZEPAN-1-YL)-1-METHYL-1H-PYRAZOL-4-YL)-2-(2,6-DIFLUOROPHENYL) TITLE 3 THIAZOLE-4-CARBOXAMIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,C.NOLAND REVDAT 3 11-OCT-23 6NO9 1 REMARK REVDAT 2 13-MAR-19 6NO9 1 JRNL REVDAT 1 27-FEB-19 6NO9 0 JRNL AUTH X.WANG,W.BLACKABY,V.ALLEN,G.K.Y.CHAN,J.H.CHANG,P.C.CHIANG, JRNL AUTH 2 C.DIENE,J.DRUMMOND,S.DO,E.FAN,E.B.HARSTAD,A.HODGES,H.HU, JRNL AUTH 3 W.JIA,W.KOFIE,A.KOLESNIKOV,J.P.LYSSIKATOS,J.LY,M.MATTEUCCI, JRNL AUTH 4 J.G.MOFFAT,V.MUNUGALAVADLA,J.MURRAY,D.NASH,C.L.NOLAND, JRNL AUTH 5 G.DEL ROSARIO,L.ROSS,C.ROUSE,A.SHARPE,D.SLAGA,M.SUN,V.TSUI, JRNL AUTH 6 H.WALLWEBER,S.F.YU,A.J.EBENS JRNL TITL OPTIMIZATION OF PAN-PIM KINASE ACTIVITY AND ORAL JRNL TITL 2 BIOAVAILABILITY LEADING TO DIAMINOPYRAZOLE (GDC-0339) FOR JRNL TITL 3 THE TREATMENT OF MULTIPLE MYELOMA. JRNL REF J. MED. CHEM. V. 62 2140 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30715878 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01857 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.1 REMARK 3 NUMBER OF REFLECTIONS : 31869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8554 - 3.8071 1.00 4056 212 0.1471 0.1748 REMARK 3 2 3.8071 - 3.0221 1.00 4004 204 0.1557 0.2026 REMARK 3 3 3.0221 - 2.6402 1.00 3988 216 0.1797 0.2253 REMARK 3 4 2.6402 - 2.3988 1.00 3975 220 0.1889 0.2453 REMARK 3 5 2.3988 - 2.2269 1.00 3968 213 0.1846 0.2047 REMARK 3 6 2.2269 - 2.0956 0.99 3931 199 0.2018 0.2227 REMARK 3 7 2.0956 - 1.9906 0.68 2695 146 0.2131 0.2464 REMARK 3 8 1.9906 - 1.9040 0.42 1677 81 0.2227 0.2660 REMARK 3 9 1.9040 - 1.8307 0.28 1095 55 0.2435 0.2385 REMARK 3 10 1.8307 - 1.7675 0.17 675 44 0.3128 0.3291 REMARK 3 11 1.7675 - 1.7122 0.05 203 12 0.3492 0.2998 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 33:49) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1571 8.7873 4.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.7711 T22: 0.3208 REMARK 3 T33: 0.8761 T12: 0.0226 REMARK 3 T13: 0.0298 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.4322 L22: 4.0775 REMARK 3 L33: 8.6100 L12: -2.9323 REMARK 3 L13: -0.2632 L23: -1.8348 REMARK 3 S TENSOR REMARK 3 S11: 0.2439 S12: 0.0411 S13: 1.2953 REMARK 3 S21: 0.0643 S22: -0.4949 S23: -0.3056 REMARK 3 S31: -0.9213 S32: 0.8725 S33: 0.2184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 50:73) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3306 6.3755 1.9675 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 0.2607 REMARK 3 T33: 0.4625 T12: 0.0403 REMARK 3 T13: 0.0398 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.7985 L22: 2.1697 REMARK 3 L33: 2.2463 L12: 0.6617 REMARK 3 L13: -1.0750 L23: -0.0360 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.2395 S13: 0.5010 REMARK 3 S21: -0.1121 S22: 0.1556 S23: 0.2614 REMARK 3 S31: -0.7286 S32: -0.0318 S33: 0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 74:96) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1689 -2.9565 -7.2781 REMARK 3 T TENSOR REMARK 3 T11: 0.6082 T22: 0.4907 REMARK 3 T33: 0.4972 T12: -0.0707 REMARK 3 T13: 0.1459 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.5365 L22: 1.0502 REMARK 3 L33: 1.0322 L12: -0.4086 REMARK 3 L13: 0.3233 L23: -0.1484 REMARK 3 S TENSOR REMARK 3 S11: -0.1719 S12: 0.6238 S13: 0.4024 REMARK 3 S21: -0.5450 S22: 0.2343 S23: -0.8113 REMARK 3 S31: -0.3866 S32: 1.0122 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:140) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0020 -3.1245 4.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.2360 REMARK 3 T33: 0.2978 T12: 0.0726 REMARK 3 T13: 0.0009 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 1.5858 L22: 2.3257 REMARK 3 L33: 2.1462 L12: 0.4322 REMARK 3 L13: 0.1986 L23: -0.1823 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0484 S13: 0.3821 REMARK 3 S21: -0.0493 S22: 0.1251 S23: 0.2568 REMARK 3 S31: -0.5386 S32: -0.1022 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:204) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6952 -14.7161 3.3267 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.2119 REMARK 3 T33: 0.2423 T12: 0.0456 REMARK 3 T13: -0.0098 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.0796 L22: 2.5300 REMARK 3 L33: 3.4323 L12: 0.0898 REMARK 3 L13: -0.3757 L23: -0.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.1369 S13: 0.0859 REMARK 3 S21: -0.1378 S22: -0.0267 S23: -0.0455 REMARK 3 S31: -0.0870 S32: 0.1348 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 205:250) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2888 -21.3493 13.0788 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.4334 REMARK 3 T33: 0.3365 T12: 0.0811 REMARK 3 T13: -0.0606 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.6474 L22: 2.2459 REMARK 3 L33: 1.7427 L12: 0.5603 REMARK 3 L13: -0.5180 L23: -1.1824 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.2636 S13: 0.0092 REMARK 3 S21: 0.1541 S22: -0.0820 S23: -0.3379 REMARK 3 S31: 0.1176 S32: 0.5461 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:290) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9510 -29.7560 11.5046 REMARK 3 T TENSOR REMARK 3 T11: 0.3713 T22: 0.2825 REMARK 3 T33: 0.2911 T12: 0.0946 REMARK 3 T13: -0.0200 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.1364 L22: 1.8537 REMARK 3 L33: 1.7561 L12: 0.9726 REMARK 3 L13: -0.3092 L23: -0.6955 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.1827 S13: -0.2813 REMARK 3 S21: -0.0616 S22: -0.0143 S23: 0.0584 REMARK 3 S31: 0.6515 S32: 0.1365 S33: -0.0011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 291:305) REMARK 3 ORIGIN FOR THE GROUP (A): -58.3101 -17.9263 7.6626 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.5358 REMARK 3 T33: 0.4910 T12: 0.0367 REMARK 3 T13: -0.0085 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4112 L22: 0.6750 REMARK 3 L33: 0.9139 L12: 0.1935 REMARK 3 L13: -0.0635 L23: -0.6577 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.0919 S13: -0.3309 REMARK 3 S21: -0.5485 S22: 0.1649 S23: 0.9146 REMARK 3 S31: 0.1808 S32: -0.8236 S33: 0.0140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 18-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39434 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 58.097 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 4.19800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5V80 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8.5, 0.1-0.3M LISO4, AND 29 REMARK 280 -33% PEG 4000, PH 8.5, EVAPORATION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.80200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.90100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.35150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.45050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.25250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 124 O HOH A 601 2.07 REMARK 500 NE ARG A 57 OD2 ASP A 60 2.10 REMARK 500 O HOH A 722 O HOH A 736 2.17 REMARK 500 OE2 GLU A 142 O HOH A 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 167 44.91 -144.34 REMARK 500 ASP A 186 83.92 60.03 REMARK 500 ASP A 202 10.84 -140.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KUV A 504 DBREF 6NO9 A 33 305 UNP P11309 PIM1_HUMAN 33 305 SEQRES 1 A 273 PRO LEU GLU SER GLN TYR GLN VAL GLY PRO LEU LEU GLY SEQRES 2 A 273 SER GLY GLY PHE GLY SER VAL TYR SER GLY ILE ARG VAL SEQRES 3 A 273 SER ASP ASN LEU PRO VAL ALA ILE LYS HIS VAL GLU LYS SEQRES 4 A 273 ASP ARG ILE SER ASP TRP GLY GLU LEU PRO ASN GLY THR SEQRES 5 A 273 ARG VAL PRO MET GLU VAL VAL LEU LEU LYS LYS VAL SER SEQRES 6 A 273 SER GLY PHE SER GLY VAL ILE ARG LEU LEU ASP TRP PHE SEQRES 7 A 273 GLU ARG PRO ASP SER PHE VAL LEU ILE LEU GLU ARG PRO SEQRES 8 A 273 GLU PRO VAL GLN ASP LEU PHE ASP PHE ILE THR GLU ARG SEQRES 9 A 273 GLY ALA LEU GLN GLU GLU LEU ALA ARG SER PHE PHE TRP SEQRES 10 A 273 GLN VAL LEU GLU ALA VAL ARG HIS CYS HIS ASN CYS GLY SEQRES 11 A 273 VAL LEU HIS ARG ASP ILE LYS ASP GLU ASN ILE LEU ILE SEQRES 12 A 273 ASP LEU ASN ARG GLY GLU LEU LYS LEU ILE ASP PHE GLY SEQRES 13 A 273 SER GLY ALA LEU LEU LYS ASP THR VAL TYR THR ASP PHE SEQRES 14 A 273 ASP GLY THR ARG VAL TYR SER PRO PRO GLU TRP ILE ARG SEQRES 15 A 273 TYR HIS ARG TYR HIS GLY ARG SER ALA ALA VAL TRP SER SEQRES 16 A 273 LEU GLY ILE LEU LEU TYR ASP MET VAL CYS GLY ASP ILE SEQRES 17 A 273 PRO PHE GLU HIS ASP GLU GLU ILE ILE ARG GLY GLN VAL SEQRES 18 A 273 PHE PHE ARG GLN ARG VAL SER SER GLU CYS GLN HIS LEU SEQRES 19 A 273 ILE ARG TRP CYS LEU ALA LEU ARG PRO SER ASP ARG PRO SEQRES 20 A 273 THR PHE GLU GLU ILE GLN ASN HIS PRO TRP MET GLN ASP SEQRES 21 A 273 VAL LEU LEU PRO GLN GLU THR ALA GLU ILE HIS LEU HIS HET GOL A 501 6 HET PO4 A 502 5 HET PO4 A 503 5 HET KUV A 504 34 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM KUV 5-AMINO-N-{5-[(4R,5R)-4-AMINO-5-FLUOROAZEPAN-1-YL]-1- HETNAM 2 KUV METHYL-1H-PYRAZOL-4-YL}-2-(2,6-DIFLUOROPHENYL)-1,3- HETNAM 3 KUV THIAZOLE-4-CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 KUV C20 H22 F3 N7 O S FORMUL 6 HOH *146(H2 O) HELIX 1 AA1 ASP A 72 ILE A 74 5 3 HELIX 2 AA2 MET A 88 SER A 97 1 10 HELIX 3 AA3 LEU A 129 GLY A 137 1 9 HELIX 4 AA4 GLN A 140 CYS A 161 1 22 HELIX 5 AA5 LYS A 169 GLU A 171 5 3 HELIX 6 AA6 THR A 204 SER A 208 5 5 HELIX 7 AA7 PRO A 209 HIS A 216 1 8 HELIX 8 AA8 HIS A 219 GLY A 238 1 20 HELIX 9 AA9 HIS A 244 GLY A 251 1 8 HELIX 10 AB1 SER A 260 LEU A 271 1 12 HELIX 11 AB2 ARG A 274 ARG A 278 5 5 HELIX 12 AB3 THR A 280 ASN A 286 1 7 HELIX 13 AB4 HIS A 287 GLN A 291 5 5 HELIX 14 AB5 LEU A 295 LEU A 304 1 10 SHEET 1 AA1 5 TYR A 38 GLY A 47 0 SHEET 2 AA1 5 GLY A 50 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53 SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 120 N ALA A 65 SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119 SHEET 1 AA2 2 TRP A 77 GLU A 79 0 SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 AA3 3 VAL A 126 ASP A 128 0 SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 AA4 2 VAL A 163 LEU A 164 0 SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 PRO A 33 LEU A 34 0 -5.75 CISPEP 2 ASP A 60 ASN A 61 0 -6.63 CISPEP 3 GLU A 124 PRO A 125 0 -6.09 SITE 1 AC1 7 PHE A 130 ILE A 133 THR A 134 ASP A 170 SITE 2 AC1 7 ASP A 234 GLY A 238 HOH A 639 SITE 1 AC2 7 ARG A 156 ARG A 258 SER A 261 PHE A 281 SITE 2 AC2 7 HOH A 607 HOH A 611 HOH A 638 SITE 1 AC3 4 GLU A 142 ARG A 145 HOH A 603 HOH A 604 SITE 1 AC4 17 LEU A 44 PHE A 49 ALA A 65 LYS A 67 SITE 2 AC4 17 ILE A 104 LEU A 120 GLU A 121 ARG A 122 SITE 3 AC4 17 VAL A 126 ASP A 128 GLU A 171 ASN A 172 SITE 4 AC4 17 LEU A 174 ILE A 185 ASP A 186 HOH A 662 SITE 5 AC4 17 HOH A 674 CRYST1 96.632 96.632 80.703 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010349 0.005975 0.000000 0.00000 SCALE2 0.000000 0.011949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012391 0.00000