HEADER TRANSFERASE 17-JAN-19 6NP5 TITLE AAC-VIA BOUND TO KANAMYCIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE N(3)-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.81; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: AAC 3-VI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTIBIOTIC MODIFYING ENZYME, SUBSTRATE SELECTIVITY, ANTIBIOTIC, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,M.J.CUNEO REVDAT 3 11-OCT-23 6NP5 1 HETSYN LINK REVDAT 2 06-NOV-19 6NP5 1 JRNL REVDAT 1 25-SEP-19 6NP5 0 JRNL AUTH P.KUMAR,P.K.AGARWAL,M.B.WADDELL,T.MITTAG,E.H.SERPERSU, JRNL AUTH 2 M.J.CUNEO JRNL TITL LOW-BARRIER AND CANONICAL HYDROGEN BONDS MODULATE ACTIVITY JRNL TITL 2 AND SPECIFICITY OF A CATALYTIC TRIAD. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 16260 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 31515870 JRNL DOI 10.1002/ANIE.201908535 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 69103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2140 - 3.9559 0.99 2698 143 0.1430 0.1484 REMARK 3 2 3.9559 - 3.1402 1.00 2657 140 0.1266 0.1521 REMARK 3 3 3.1402 - 2.7433 1.00 2674 140 0.1224 0.1229 REMARK 3 4 2.7433 - 2.4925 1.00 2638 139 0.1167 0.1323 REMARK 3 5 2.4925 - 2.3139 1.00 2679 141 0.1091 0.1111 REMARK 3 6 2.3139 - 2.1775 1.00 2626 139 0.1003 0.1286 REMARK 3 7 2.1775 - 2.0684 1.00 2664 140 0.1071 0.1202 REMARK 3 8 2.0684 - 1.9784 1.00 2647 139 0.0985 0.1192 REMARK 3 9 1.9784 - 1.9022 1.00 2664 140 0.0981 0.1308 REMARK 3 10 1.9022 - 1.8366 1.00 2634 138 0.1003 0.1427 REMARK 3 11 1.8366 - 1.7791 1.00 2642 140 0.1022 0.1170 REMARK 3 12 1.7791 - 1.7283 1.00 2638 139 0.0978 0.1240 REMARK 3 13 1.7283 - 1.6828 1.00 2646 138 0.0978 0.1393 REMARK 3 14 1.6828 - 1.6417 1.00 2638 140 0.0956 0.1186 REMARK 3 15 1.6417 - 1.6044 1.00 2655 140 0.0957 0.1275 REMARK 3 16 1.6044 - 1.5703 1.00 2619 138 0.1018 0.1386 REMARK 3 17 1.5703 - 1.5388 1.00 2675 140 0.1152 0.1406 REMARK 3 18 1.5388 - 1.5098 1.00 2649 140 0.1189 0.1653 REMARK 3 19 1.5098 - 1.4828 1.00 2635 138 0.1303 0.1776 REMARK 3 20 1.4828 - 1.4577 1.00 2622 138 0.1546 0.1731 REMARK 3 21 1.4577 - 1.4342 1.00 2648 140 0.1668 0.2048 REMARK 3 22 1.4342 - 1.4121 1.00 2650 139 0.1895 0.2221 REMARK 3 23 1.4121 - 1.3914 1.00 2591 137 0.2052 0.2315 REMARK 3 24 1.3914 - 1.3718 1.00 2672 141 0.2191 0.2476 REMARK 3 25 1.3718 - 1.3532 0.80 2086 109 0.2237 0.2658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BC6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% POLYETHYLENE GLYCOL (PEG) REMARK 280 8000,0.1 M TRIS, PH=8.5 AND 0.3 M MGCL2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.37300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.21450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.37300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.21450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 772 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 795 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 302 O HOH A 406 1.16 REMARK 500 HZ1 LYS A 23 O HOH A 405 1.41 REMARK 500 HH21 ARG A 251 O HOH A 407 1.52 REMARK 500 OE1 GLU A 86 O HOH A 401 1.55 REMARK 500 O HOH A 408 O HOH A 409 1.79 REMARK 500 O HOH A 492 O HOH A 675 1.80 REMARK 500 O HOH A 630 O HOH A 681 1.85 REMARK 500 O HOH A 443 O HOH A 654 1.86 REMARK 500 O HOH A 552 O HOH A 685 1.88 REMARK 500 O HOH A 698 O HOH A 766 1.90 REMARK 500 O HOH A 473 O HOH A 746 1.92 REMARK 500 O HOH A 406 O HOH A 680 1.93 REMARK 500 O HOH A 415 O HOH A 605 1.94 REMARK 500 O HOH A 429 O HOH A 594 1.96 REMARK 500 O HOH A 667 O HOH A 683 2.00 REMARK 500 O HOH A 574 O HOH A 685 2.01 REMARK 500 O VAL A 45 O HOH A 402 2.02 REMARK 500 O HOH A 736 O HOH A 743 2.02 REMARK 500 O HOH A 791 O HOH A 794 2.03 REMARK 500 O HOH A 412 O HOH A 672 2.03 REMARK 500 NH2 ARG A 31 O HOH A 403 2.04 REMARK 500 OE1 GLU A 86 O HOH A 404 2.10 REMARK 500 O HOH A 415 O HOH A 557 2.15 REMARK 500 O HOH A 492 O HOH A 652 2.16 REMARK 500 O HOH A 636 O HOH A 755 2.16 REMARK 500 O HOH A 402 O HOH A 591 2.16 REMARK 500 O HOH A 693 O HOH A 758 2.17 REMARK 500 O HOH A 587 O HOH A 714 2.17 REMARK 500 O HOH A 479 O HOH A 579 2.19 REMARK 500 O HOH A 667 O HOH A 671 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 406 O HOH A 796 2856 1.46 REMARK 500 HH12 ARG A 162 O HOH A 594 2855 1.53 REMARK 500 O HOH A 406 O HOH A 406 2856 1.86 REMARK 500 O HOH A 455 O HOH A 680 2856 1.95 REMARK 500 O HOH A 422 O HOH A 443 4755 2.18 REMARK 500 NH1 ARG A 162 O HOH A 594 2855 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 -145.55 56.50 REMARK 500 PRO A 84 44.02 -84.57 REMARK 500 ARG A 162 -2.01 79.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 145 OD2 REMARK 620 2 ASP A 145 OD2 0.0 REMARK 620 3 HOH A 521 O 85.0 85.0 REMARK 620 4 HOH A 521 O 76.7 76.7 99.3 REMARK 620 5 HOH A 680 O 71.6 71.6 156.6 77.4 REMARK 620 6 HOH A 680 O 125.4 125.4 77.4 156.6 114.6 REMARK 620 7 HOH A 796 O 131.5 131.5 143.1 95.3 60.0 75.8 REMARK 620 8 HOH A 796 O 71.0 71.0 95.2 143.1 75.8 60.0 93.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 539 O REMARK 620 2 HOH A 659 O 82.1 REMARK 620 3 HOH A 692 O 91.9 101.4 REMARK 620 4 HOH A 705 O 87.0 86.5 171.9 REMARK 620 5 HOH A 730 O 100.8 175.9 75.8 96.5 REMARK 620 6 HOH A 787 O 172.3 90.2 91.0 91.3 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9CS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE T132S DISCREPANCY ARISES FROM A SNP IN THE ENTEROBACTERIACEAE REMARK 999 SPECIES DBREF 6NP5 A 19 286 UNP Q47030 Q47030_ENTCL 19 286 SEQADV 6NP5 SER A 132 UNP Q47030 THR 132 VARIANT SEQRES 1 A 268 THR PRO TRP SER LYS SER GLU LEU VAL ARG GLN LEU ARG SEQRES 2 A 268 ASP LEU GLY VAL ARG SER GLY ASP MET VAL MET PRO HIS SEQRES 3 A 268 VAL SER LEU ARG ALA VAL GLY PRO LEU ALA ASP GLY PRO SEQRES 4 A 268 GLN THR LEU VAL ASP ALA LEU ILE GLU ALA VAL GLY PRO SEQRES 5 A 268 THR GLY ASN ILE LEU ALA PHE VAL SER TRP ARG ASP SER SEQRES 6 A 268 PRO TYR GLU GLN THR LEU GLY HIS ASP ALA PRO PRO ALA SEQRES 7 A 268 ALA ILE ALA GLN SER TRP PRO ALA PHE ASP PRO ASP HIS SEQRES 8 A 268 ALA PRO ALA TYR PRO GLY PHE GLY ALA ILE ASN GLU PHE SEQRES 9 A 268 ILE ARG THR TYR PRO GLY CYS ARG ARG SER ALA HIS PRO SEQRES 10 A 268 ASP ALA SER MET ALA ALA ILE GLY PRO ASP ALA ALA TRP SEQRES 11 A 268 LEU VAL ALA PRO HIS GLU MET GLY ALA ALA TYR GLY PRO SEQRES 12 A 268 ARG SER PRO ILE ALA ARG PHE LEU ALA HIS ALA GLY LYS SEQRES 13 A 268 ILE LEU SER ILE GLY ALA GLY PRO ASP ALA VAL THR ALA SEQRES 14 A 268 LEU HIS TYR ALA GLU ALA VAL ALA ARG ILE GLU GLY LYS SEQRES 15 A 268 ARG ARG VAL THR TYR SER MET PRO LEU LEU ARG GLU GLY SEQRES 16 A 268 LYS ARG VAL TRP VAL THR THR SER ASP TRP ASP SER ASN SEQRES 17 A 268 GLY ILE LEU ASP GLU TYR ALA ALA PRO ASP GLY PRO ASP SEQRES 18 A 268 ALA VAL GLU ARG ILE ALA ARG ASP TYR LEU ALA ARG THR SEQRES 19 A 268 ARG VAL ALA GLN GLY PRO VAL GLY GLY ALA GLN SER ARG SEQRES 20 A 268 LEU ILE ASP ALA ALA ASP ILE VAL SER PHE GLY ILE GLU SEQRES 21 A 268 TRP LEU GLU ALA ARG HIS ALA ALA HET 9CS A 301 138 HET MG A 302 1 HET MG A 303 1 HETNAM 9CS (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA- HETNAM 2 9CS D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO- HETNAM 3 9CS 2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE HETNAM MG MAGNESIUM ION HETSYN 9CS KANAMYCIN B; BEKANAMYCIN FORMUL 2 9CS C18 H37 N5 O10 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *416(H2 O) HELIX 1 AA1 SER A 22 GLY A 34 1 13 HELIX 2 AA2 SER A 46 GLY A 51 1 6 HELIX 3 AA3 GLY A 56 GLY A 69 1 14 HELIX 4 AA4 PRO A 84 LEU A 89 1 6 HELIX 5 AA5 PRO A 95 TRP A 102 1 8 HELIX 6 AA6 TYR A 113 GLY A 117 5 5 HELIX 7 AA7 ALA A 118 THR A 125 1 8 HELIX 8 AA8 ASP A 145 ALA A 151 1 7 HELIX 9 AA9 SER A 163 HIS A 171 1 9 HELIX 10 AB1 GLY A 181 THR A 186 5 6 HELIX 11 AB2 ALA A 187 ALA A 195 1 9 HELIX 12 AB3 LEU A 229 ALA A 233 5 5 HELIX 13 AB4 ASP A 239 THR A 252 1 14 HELIX 14 AB5 ALA A 269 HIS A 284 1 16 SHEET 1 AA1 7 ARG A 130 ARG A 131 0 SHEET 2 AA1 7 MET A 139 ILE A 142 -1 O ALA A 141 N ARG A 130 SHEET 3 AA1 7 ASN A 73 PHE A 77 -1 N ALA A 76 O ALA A 140 SHEET 4 AA1 7 MET A 40 VAL A 45 1 N VAL A 41 O ASN A 73 SHEET 5 AA1 7 LYS A 174 ILE A 178 1 O ILE A 178 N HIS A 44 SHEET 6 AA1 7 ALA A 262 ASP A 268 -1 O ILE A 267 N ILE A 175 SHEET 7 AA1 7 ALA A 255 VAL A 259 -1 N VAL A 259 O ALA A 262 SHEET 1 AA2 2 ARG A 202 ARG A 211 0 SHEET 2 AA2 2 LYS A 214 TRP A 223 -1 O VAL A 216 N LEU A 209 LINK OD2 ASP A 145 MG MG A 302 1555 1555 2.90 LINK OD2 ASP A 145 MG MG A 302 1555 2856 2.89 LINK MG MG A 302 O HOH A 521 1555 1555 1.85 LINK MG MG A 302 O HOH A 521 1555 2856 1.85 LINK MG MG A 302 O HOH A 680 1555 1555 2.60 LINK MG MG A 302 O HOH A 680 1555 2856 2.60 LINK MG MG A 302 O HOH A 796 1555 1555 2.20 LINK MG MG A 302 O HOH A 796 1555 2856 2.21 LINK MG MG A 303 O HOH A 539 1555 1555 2.08 LINK MG MG A 303 O HOH A 659 1555 1555 2.09 LINK MG MG A 303 O HOH A 692 1555 1555 1.97 LINK MG MG A 303 O HOH A 705 1555 1555 2.16 LINK MG MG A 303 O HOH A 730 1555 1555 2.00 LINK MG MG A 303 O HOH A 787 1555 1555 1.98 CISPEP 1 ALA A 151 PRO A 152 0 2.37 CISPEP 2 GLY A 237 PRO A 238 0 -0.78 SITE 1 AC1 21 TYR A 85 GLU A 86 ASP A 136 TYR A 159 SITE 2 AC1 21 ASP A 183 HIS A 189 SER A 225 ASN A 226 SITE 3 AC1 21 HOH A 440 HOH A 444 HOH A 449 HOH A 468 SITE 4 AC1 21 HOH A 485 HOH A 501 HOH A 505 HOH A 538 SITE 5 AC1 21 HOH A 542 HOH A 545 HOH A 562 HOH A 572 SITE 6 AC1 21 HOH A 631 SITE 1 AC2 5 ASP A 145 HOH A 406 HOH A 521 HOH A 680 SITE 2 AC2 5 HOH A 796 SITE 1 AC3 6 HOH A 539 HOH A 659 HOH A 692 HOH A 705 SITE 2 AC3 6 HOH A 730 HOH A 787 CRYST1 86.746 86.429 50.119 90.00 119.75 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011528 0.000000 0.006588 0.00000 SCALE2 0.000000 0.011570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022981 0.00000