HEADER TRANSFERASE 18-JAN-19 6NPU
TITLE C-ABL KINASE DOMAIN WITH THE ACTIVATOR(CMPD29), N-(1-(3,4-
TITLE 2 DICHLOROPHENYL)-4,5-DIHYDRO-1H-PYRAZOL-3-YL)ACETAMIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON
COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150;
COMPND 6 EC: 2.7.10.2;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ABL1, ABL, JTK7;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 2 RZ-2014;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1491790
KEYWDS ACTIVATOR, KINASE, ALLOSTERIC, SIGNALING PROTEIN, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR N.CAMPOBASSO
REVDAT 2 13-MAR-24 6NPU 1 HETSYN
REVDAT 1 13-MAR-19 6NPU 0
JRNL AUTH G.L.SIMPSON,S.M.BERTRAND,J.A.BORTHWICK,N.CAMPOBASSO,
JRNL AUTH 2 J.CHABANET,S.CHEN,J.COGGINS,J.COTTOM,S.B.CHRISTENSEN,
JRNL AUTH 3 H.C.DAWSON,H.L.EVANS,A.N.HOBBS,X.HONG,B.MANGATT,
JRNL AUTH 4 J.MUNOZ-MURIEDAS,A.OLIFF,D.QIN,P.SCOTT-STEVENS,P.WARD,
JRNL AUTH 5 Y.WASHIO,J.YANG,R.J.YOUNG
JRNL TITL IDENTIFICATION AND OPTIMIZATION OF NOVEL SMALL C-ABL KINASE
JRNL TITL 2 ACTIVATORS USING FRAGMENT AND HTS METHODOLOGIES.
JRNL REF J. MED. CHEM. V. 62 2154 2019
JRNL REFN ISSN 1520-4804
JRNL PMID 30689376
JRNL DOI 10.1021/ACS.JMEDCHEM.8B01872
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH J.YANG,N.CAMPOBASSO,M.P.BIJU,K.FISHER,X.Q.PAN,J.COTTOM,
REMARK 1 AUTH 2 S.GALBRAITH,T.HO,H.ZHANG,X.HONG,P.WARD,G.HOFMANN,
REMARK 1 AUTH 3 B.SIEGFRIED,F.ZAPPACOSTA,Y.WASHIO,P.CAO,J.QU,S.BERTRAND,
REMARK 1 AUTH 4 D.Y.WANG,M.S.HEAD,H.LI,S.MOORES,Z.LAI,K.JOHANSON,G.BURTON,
REMARK 1 AUTH 5 C.ERICKSON-MILLER,G.SIMPSON,P.TUMMINO,R.A.COPELAND,A.OLIFF
REMARK 1 TITL DISCOVERY AND CHARACTERIZATION OF A CELL-PERMEABLE,
REMARK 1 TITL 2 SMALL-MOLECULE C-ABL KINASE ACTIVATOR THAT BINDS TO THE
REMARK 1 TITL 3 MYRISTOYL BINDING SITE.
REMARK 1 REF CHEM. BIOL. V. 18 177 2011
REMARK 1 REFN ISSN 1879-1301
REMARK 1 DOI 10.1016/J.CHEMBIOL.2010.12.013
REMARK 2
REMARK 2 RESOLUTION. 2.33 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.14_3260
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.70
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9
REMARK 3 NUMBER OF REFLECTIONS : 34981
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.196
REMARK 3 R VALUE (WORKING SET) : 0.193
REMARK 3 FREE R VALUE : 0.234
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090
REMARK 3 FREE R VALUE TEST SET COUNT : 1780
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 73.7100 - 5.4700 0.98 2796 149 0.1816 0.2025
REMARK 3 2 5.4700 - 4.3400 0.99 2680 156 0.1585 0.2007
REMARK 3 3 4.3400 - 3.7900 0.93 2494 133 0.1611 0.2045
REMARK 3 4 3.7900 - 3.4400 0.88 2341 125 0.1795 0.2033
REMARK 3 5 3.4400 - 3.2000 0.98 2468 145 0.2031 0.2379
REMARK 3 6 3.2000 - 3.0100 1.00 2656 130 0.2070 0.2513
REMARK 3 7 3.0100 - 2.8600 1.00 2650 133 0.2087 0.2528
REMARK 3 8 2.8600 - 2.7300 1.00 2628 135 0.2141 0.2429
REMARK 3 9 2.7300 - 2.6300 0.76 2005 106 0.2249 0.2927
REMARK 3 10 2.6300 - 2.5400 1.00 2611 146 0.2183 0.2858
REMARK 3 11 2.5400 - 2.4600 1.00 2629 136 0.2387 0.2989
REMARK 3 12 2.4600 - 2.3900 1.00 2629 138 0.2403 0.3237
REMARK 3 13 2.3900 - 2.3300 1.00 2614 148 0.2461 0.2961
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.684
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 29.91
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 4497
REMARK 3 ANGLE : 0.997 6073
REMARK 3 CHIRALITY : 0.052 628
REMARK 3 PLANARITY : 0.006 755
REMARK 3 DIHEDRAL : 10.151 2638
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6NPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-19.
REMARK 100 THE DEPOSITION ID IS D_1000239185.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-DEC-08
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-F
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34988
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330
REMARK 200 RESOLUTION RANGE LOW (A) : 73.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9
REMARK 200 DATA REDUNDANCY : 5.500
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.84
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1 - 3 % PEG 400 2M AMSO4 0.1 HEPES PH
REMARK 280 7.5 CRYO: 20% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.54650
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.76750
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.82150
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.76750
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.54650
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.82150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 234
REMARK 465 HIS A 235
REMARK 465 HIS A 236
REMARK 465 HIS A 237
REMARK 465 HIS A 238
REMARK 465 HIS A 239
REMARK 465 HIS A 240
REMARK 465 GLU A 241
REMARK 465 ASN A 242
REMARK 465 LEU A 243
REMARK 465 TYR A 244
REMARK 465 PHE A 245
REMARK 465 GLN A 246
REMARK 465 GLY A 247
REMARK 465 SER A 248
REMARK 465 PRO A 249
REMARK 465 ASN A 250
REMARK 465 GLU A 294
REMARK 465 ASP A 295
REMARK 465 THR A 296
REMARK 465 MET A 297
REMARK 465 GLU A 298
REMARK 465 SER A 520
REMARK 465 ILE A 521
REMARK 465 SER A 522
REMARK 465 ASP A 523
REMARK 465 GLU A 524
REMARK 465 VAL A 525
REMARK 465 GLU A 526
REMARK 465 LYS A 527
REMARK 465 GLU A 528
REMARK 465 LEU A 529
REMARK 465 GLY A 530
REMARK 465 LYS A 531
REMARK 465 MET B 234
REMARK 465 HIS B 235
REMARK 465 HIS B 236
REMARK 465 HIS B 237
REMARK 465 HIS B 238
REMARK 465 HIS B 239
REMARK 465 HIS B 240
REMARK 465 GLU B 241
REMARK 465 ASN B 242
REMARK 465 LEU B 243
REMARK 465 TYR B 244
REMARK 465 PHE B 245
REMARK 465 GLN B 246
REMARK 465 GLY B 247
REMARK 465 SER B 248
REMARK 465 PRO B 249
REMARK 465 ASN B 250
REMARK 465 TYR B 251
REMARK 465 LYS B 293
REMARK 465 GLU B 294
REMARK 465 ASP B 295
REMARK 465 THR B 296
REMARK 465 MET B 297
REMARK 465 GLU B 298
REMARK 465 LEU B 403
REMARK 465 SER B 404
REMARK 465 ARG B 405
REMARK 465 LEU B 406
REMARK 465 MET B 407
REMARK 465 THR B 408
REMARK 465 GLY B 409
REMARK 465 ASP B 410
REMARK 465 THR B 411
REMARK 465 TYR B 412
REMARK 465 THR B 413
REMARK 465 ALA B 414
REMARK 465 HIS B 415
REMARK 465 ALA B 416
REMARK 465 GLY B 417
REMARK 465 GLY B 530
REMARK 465 LYS B 531
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 TYR A 251 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ARG A 326 CD NE CZ NH1 NH2
REMARK 470 THR A 408 OG1 CG2
REMARK 470 ASP A 410 CG OD1 OD2
REMARK 470 LYS A 434 CD CE NZ
REMARK 470 GLU B 327 CG CD OE1 OE2
REMARK 470 LYS B 375 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE2 GLU B 526 O HOH B 701 2.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 252 -166.44 -110.61
REMARK 500 HIS A 265 158.75 171.58
REMARK 500 ASN A 355 -169.12 -101.17
REMARK 500 ARG A 381 -8.07 85.82
REMARK 500 ASP A 382 48.70 -150.38
REMARK 500 HIS A 415 122.99 -175.03
REMARK 500 LYS B 264 -133.38 -79.09
REMARK 500 HIS B 314 144.56 -171.14
REMARK 500 ASN B 355 -163.60 -101.46
REMARK 500 ARG B 381 -10.02 82.99
REMARK 500 ASP B 382 45.19 -143.67
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue STI A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue KWV A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue STI B 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue KWV B 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE B 606
DBREF 6NPU A 248 531 UNP P00519 ABL1_HUMAN 229 512
DBREF 6NPU B 248 531 UNP P00519 ABL1_HUMAN 229 512
SEQADV 6NPU MET A 234 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS A 235 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS A 236 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS A 237 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS A 238 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS A 239 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS A 240 UNP P00519 EXPRESSION TAG
SEQADV 6NPU GLU A 241 UNP P00519 EXPRESSION TAG
SEQADV 6NPU ASN A 242 UNP P00519 EXPRESSION TAG
SEQADV 6NPU LEU A 243 UNP P00519 EXPRESSION TAG
SEQADV 6NPU TYR A 244 UNP P00519 EXPRESSION TAG
SEQADV 6NPU PHE A 245 UNP P00519 EXPRESSION TAG
SEQADV 6NPU GLN A 246 UNP P00519 EXPRESSION TAG
SEQADV 6NPU GLY A 247 UNP P00519 EXPRESSION TAG
SEQADV 6NPU MET B 234 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS B 235 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS B 236 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS B 237 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS B 238 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS B 239 UNP P00519 EXPRESSION TAG
SEQADV 6NPU HIS B 240 UNP P00519 EXPRESSION TAG
SEQADV 6NPU GLU B 241 UNP P00519 EXPRESSION TAG
SEQADV 6NPU ASN B 242 UNP P00519 EXPRESSION TAG
SEQADV 6NPU LEU B 243 UNP P00519 EXPRESSION TAG
SEQADV 6NPU TYR B 244 UNP P00519 EXPRESSION TAG
SEQADV 6NPU PHE B 245 UNP P00519 EXPRESSION TAG
SEQADV 6NPU GLN B 246 UNP P00519 EXPRESSION TAG
SEQADV 6NPU GLY B 247 UNP P00519 EXPRESSION TAG
SEQRES 1 A 298 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN
SEQRES 2 A 298 GLY SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR
SEQRES 3 A 298 ASP ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR
SEQRES 4 A 298 GLY GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU
SEQRES 5 A 298 THR VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU
SEQRES 6 A 298 VAL GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU
SEQRES 7 A 298 ILE LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS
SEQRES 8 A 298 THR ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET
SEQRES 9 A 298 THR TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN
SEQRES 10 A 298 ARG GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA
SEQRES 11 A 298 THR GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS
SEQRES 12 A 298 ASN PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU
SEQRES 13 A 298 VAL GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY
SEQRES 14 A 298 LEU SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS
SEQRES 15 A 298 ALA GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU
SEQRES 16 A 298 SER LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL
SEQRES 17 A 298 TRP ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR
SEQRES 18 A 298 GLY MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL
SEQRES 19 A 298 TYR GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO
SEQRES 20 A 298 GLU GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA
SEQRES 21 A 298 CYS TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA
SEQRES 22 A 298 GLU ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER
SEQRES 23 A 298 SER ILE SER ASP GLU VAL GLU LYS GLU LEU GLY LYS
SEQRES 1 B 298 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN
SEQRES 2 B 298 GLY SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR
SEQRES 3 B 298 ASP ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR
SEQRES 4 B 298 GLY GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU
SEQRES 5 B 298 THR VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU
SEQRES 6 B 298 VAL GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU
SEQRES 7 B 298 ILE LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS
SEQRES 8 B 298 THR ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET
SEQRES 9 B 298 THR TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN
SEQRES 10 B 298 ARG GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA
SEQRES 11 B 298 THR GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS
SEQRES 12 B 298 ASN PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU
SEQRES 13 B 298 VAL GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY
SEQRES 14 B 298 LEU SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS
SEQRES 15 B 298 ALA GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU
SEQRES 16 B 298 SER LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL
SEQRES 17 B 298 TRP ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR
SEQRES 18 B 298 GLY MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL
SEQRES 19 B 298 TYR GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO
SEQRES 20 B 298 GLU GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA
SEQRES 21 B 298 CYS TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA
SEQRES 22 B 298 GLU ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER
SEQRES 23 B 298 SER ILE SER ASP GLU VAL GLU LYS GLU LEU GLY LYS
HET STI A 601 37
HET KWV A 602 17
HET SO4 B 601 5
HET STI B 602 37
HET GOL B 603 6
HET GOL B 604 6
HET KWV B 605 17
HET 2PE B 606 28
HETNAM STI 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-
HETNAM 2 STI PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
HETNAM KWV ~{N}-[2-(3,4-DICHLOROPHENYL)-3,4-DIHYDROPYRAZOL-5-
HETNAM 2 KWV YL]ETHANAMIDE
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM 2PE NONAETHYLENE GLYCOL
HETSYN STI STI-571; IMATINIB
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 STI 2(C29 H31 N7 O)
FORMUL 4 KWV 2(C11 H11 CL2 N3 O)
FORMUL 5 SO4 O4 S 2-
FORMUL 7 GOL 2(C3 H8 O3)
FORMUL 10 2PE C18 H38 O10
FORMUL 11 HOH *72(H2 O)
HELIX 1 AA1 GLU A 257 THR A 259 5 3
HELIX 2 AA2 GLY A 268 GLN A 271 5 4
HELIX 3 AA3 LYS A 282 SER A 284 5 3
HELIX 4 AA4 GLU A 300 GLU A 311 1 12
HELIX 5 AA5 LEU A 342 CYS A 349 1 8
HELIX 6 AA6 ASN A 355 LYS A 376 1 22
HELIX 7 AA7 ALA A 384 ARG A 386 5 3
HELIX 8 AA8 GLU A 392 HIS A 394 5 3
HELIX 9 AA9 GLY A 402 MET A 407 1 6
HELIX 10 AB1 PRO A 421 THR A 425 5 5
HELIX 11 AB2 ALA A 426 ASN A 433 1 8
HELIX 12 AB3 SER A 436 THR A 453 1 18
HELIX 13 AB4 ASP A 463 LYS A 473 1 11
HELIX 14 AB5 PRO A 484 TRP A 495 1 12
HELIX 15 AB6 ASN A 498 ARG A 502 5 5
HELIX 16 AB7 SER A 504 SER A 519 1 16
HELIX 17 AB8 GLU B 257 THR B 259 5 3
HELIX 18 AB9 GLY B 268 GLN B 271 5 4
HELIX 19 AC1 LYS B 282 SER B 284 5 3
HELIX 20 AC2 GLU B 300 LYS B 310 1 11
HELIX 21 AC3 ASN B 341 CYS B 349 1 9
HELIX 22 AC4 ASN B 355 LYS B 376 1 22
HELIX 23 AC5 ALA B 384 ARG B 386 5 3
HELIX 24 AC6 GLU B 392 HIS B 394 5 3
HELIX 25 AC7 PRO B 421 THR B 425 5 5
HELIX 26 AC8 ALA B 426 ASN B 433 1 8
HELIX 27 AC9 SER B 436 THR B 453 1 18
HELIX 28 AD1 ASP B 463 SER B 465 5 3
HELIX 29 AD2 GLN B 466 LYS B 473 1 8
HELIX 30 AD3 PRO B 484 TRP B 495 1 12
HELIX 31 AD4 ASN B 498 ARG B 502 5 5
HELIX 32 AD5 SER B 504 LEU B 529 1 26
SHEET 1 AA1 5 ILE A 261 LYS A 266 0
SHEET 2 AA1 5 VAL A 275 TRP A 280 -1 O GLU A 277 N HIS A 265
SHEET 3 AA1 5 LEU A 285 THR A 291 -1 O VAL A 289 N TYR A 276
SHEET 4 AA1 5 TYR A 331 GLU A 335 -1 O ILE A 332 N LYS A 290
SHEET 5 AA1 5 LEU A 320 CYS A 324 -1 N LEU A 321 O ILE A 333
SHEET 1 AA2 3 GLY A 340 ASN A 341 0
SHEET 2 AA2 3 CYS A 388 GLY A 391 -1 O VAL A 390 N GLY A 340
SHEET 3 AA2 3 LEU A 395 VAL A 398 -1 O LYS A 397 N LEU A 389
SHEET 1 AA3 2 THR A 413 ALA A 414 0
SHEET 2 AA3 2 LYS A 419 PHE A 420 -1 O PHE A 420 N THR A 413
SHEET 1 AA4 5 ILE B 261 LYS B 266 0
SHEET 2 AA4 5 VAL B 275 TRP B 280 -1 O GLU B 277 N HIS B 265
SHEET 3 AA4 5 LEU B 285 LEU B 292 -1 O LEU B 285 N TRP B 280
SHEET 4 AA4 5 PHE B 330 GLU B 335 -1 O ILE B 332 N LYS B 290
SHEET 5 AA4 5 LEU B 320 CYS B 324 -1 N LEU B 321 O ILE B 333
SHEET 1 AA5 2 CYS B 388 VAL B 390 0
SHEET 2 AA5 2 VAL B 396 VAL B 398 -1 O LYS B 397 N LEU B 389
CISPEP 1 PRO A 328 PRO A 329 0 -1.61
CISPEP 2 PRO B 328 PRO B 329 0 -4.46
SITE 1 AC1 16 LEU A 267 ALA A 288 LYS A 290 GLU A 305
SITE 2 AC1 16 MET A 309 VAL A 318 ILE A 332 THR A 334
SITE 3 AC1 16 PHE A 336 MET A 337 ILE A 379 HIS A 380
SITE 4 AC1 16 ALA A 399 ASP A 400 PHE A 401 HOH A 736
SITE 1 AC2 10 ALA A 356 LEU A 359 ALA A 363 LEU A 448
SITE 2 AC2 10 ILE A 451 ALA A 452 GLU A 481 GLY A 482
SITE 3 AC2 10 PRO A 484 PHE A 512
SITE 1 AC3 3 GLU A 472 LYS A 473 LYS B 313
SITE 1 AC4 17 LEU B 267 TYR B 272 VAL B 275 ALA B 288
SITE 2 AC4 17 LYS B 290 GLU B 305 VAL B 308 MET B 309
SITE 3 AC4 17 VAL B 318 THR B 334 PHE B 336 MET B 337
SITE 4 AC4 17 ILE B 379 HIS B 380 ALA B 399 ASP B 400
SITE 5 AC4 17 PHE B 401
SITE 1 AC5 5 ASP B 474 ARG B 476 ARG B 492 TRP B 495
SITE 2 AC5 5 HOH B 712
SITE 1 AC6 8 LYS B 313 HIS B 314 PRO B 315 LEU B 471
SITE 2 AC6 8 GLU B 472 ASP B 474 ARG B 476 TRP B 497
SITE 1 AC7 12 ALA B 356 LEU B 360 ALA B 363 LEU B 448
SITE 2 AC7 12 ILE B 451 ALA B 452 TYR B 454 GLU B 481
SITE 3 AC7 12 GLY B 482 PRO B 484 VAL B 487 PHE B 512
SITE 1 AC8 6 VAL B 357 TYR B 361 ASN B 393 TYR B 432
SITE 2 AC8 6 LYS B 434 PHE B 516
CRYST1 75.093 95.643 115.535 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013317 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010456 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008655 0.00000