HEADER TRANSFERASE 25-JAN-19 6NSO TITLE AN UNEXPECTED INTERMEDIATE IN THE REACTION CATALYZED BY QUINOLINATE TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII (STRAIN ATCC 700860 / DSM SOURCE 3 12428 / JCM 9974 / NBRC 100139 / OT-3); SOURCE 4 ORGANISM_TAXID: 70601; SOURCE 5 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 6 GENE: NADA, PH0013; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) KEYWDS QUINOLINIC ACID, BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ESAKOVA,T.L.GROVE,A.SILAKOV,N.H.YENNAWAR,S.J.BOOKER REVDAT 3 11-OCT-23 6NSO 1 REMARK REVDAT 2 20-NOV-19 6NSO 1 REMARK REVDAT 1 16-OCT-19 6NSO 0 JRNL AUTH O.A.ESAKOVA,A.SILAKOV,T.L.GROVE,D.M.WARUI,N.H.YENNAWAR, JRNL AUTH 2 S.J.BOOKER JRNL TITL AN UNEXPECTED SPECIES DETERMINED BY X-RAY CRYSTALLOGRAPHY JRNL TITL 2 THAT MAY REPRESENT AN INTERMEDIATE IN THE REACTION CATALYZED JRNL TITL 3 BY QUINOLINATE SYNTHASE. JRNL REF J.AM.CHEM.SOC. V. 141 14142 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 31390192 JRNL DOI 10.1021/JACS.9B02513 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 31775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.310 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7734 - 3.8545 1.00 2319 157 0.1552 0.1722 REMARK 3 2 3.8545 - 3.0601 1.00 2275 158 0.1625 0.2087 REMARK 3 3 3.0601 - 2.6734 1.00 2269 155 0.1929 0.2343 REMARK 3 4 2.6734 - 2.4291 1.00 2263 148 0.1900 0.2263 REMARK 3 5 2.4291 - 2.2550 1.00 2254 152 0.1744 0.2249 REMARK 3 6 2.2550 - 2.1221 1.00 2253 156 0.1765 0.2170 REMARK 3 7 2.1221 - 2.0158 1.00 2256 154 0.1850 0.2313 REMARK 3 8 2.0158 - 1.9281 1.00 2251 142 0.1915 0.2076 REMARK 3 9 1.9281 - 1.8539 1.00 2263 158 0.2096 0.2688 REMARK 3 10 1.8539 - 1.7899 1.00 2236 150 0.2191 0.2595 REMARK 3 11 1.7899 - 1.7339 0.95 2128 138 0.2225 0.2501 REMARK 3 12 1.7339 - 1.6844 0.85 1924 121 0.2415 0.2632 REMARK 3 13 1.6844 - 1.6400 0.74 1642 119 0.2583 0.3243 REMARK 3 14 1.6400 - 1.6000 0.64 1438 96 0.2712 0.3175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2518 REMARK 3 ANGLE : 1.466 3418 REMARK 3 CHIRALITY : 0.056 384 REMARK 3 PLANARITY : 0.006 435 REMARK 3 DIHEDRAL : 14.277 1592 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9810 9.6824 37.4983 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.3359 REMARK 3 T33: 0.2052 T12: 0.0207 REMARK 3 T13: 0.0597 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 5.3178 L22: 5.7114 REMARK 3 L33: 8.4448 L12: -0.9657 REMARK 3 L13: 4.1340 L23: 4.6311 REMARK 3 S TENSOR REMARK 3 S11: 0.4532 S12: 0.0008 S13: 0.1524 REMARK 3 S21: 0.2880 S22: -0.2738 S23: 0.5932 REMARK 3 S31: 0.0666 S32: -1.2904 S33: -0.1780 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 12:36) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3247 11.2118 28.3726 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.0929 REMARK 3 T33: 0.1215 T12: 0.0138 REMARK 3 T13: 0.0317 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.7826 L22: 1.4375 REMARK 3 L33: 7.1865 L12: -0.2728 REMARK 3 L13: -0.0659 L23: 0.5929 REMARK 3 S TENSOR REMARK 3 S11: 0.1155 S12: -0.0485 S13: 0.1977 REMARK 3 S21: 0.0781 S22: 0.0736 S23: 0.1169 REMARK 3 S31: -0.2096 S32: -0.2593 S33: -0.1875 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 37:49) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7734 16.6636 25.2110 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.2419 REMARK 3 T33: 0.4695 T12: -0.0142 REMARK 3 T13: -0.0795 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.8610 L22: 0.5783 REMARK 3 L33: 7.8269 L12: -0.0219 REMARK 3 L13: -0.9858 L23: -0.4753 REMARK 3 S TENSOR REMARK 3 S11: 0.2519 S12: -0.0303 S13: -0.0393 REMARK 3 S21: 0.1310 S22: -0.0578 S23: -0.1624 REMARK 3 S31: -0.5417 S32: 0.1035 S33: -0.1786 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 50:68) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3374 7.2772 29.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.0822 REMARK 3 T33: 0.1073 T12: 0.0189 REMARK 3 T13: 0.0040 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 5.2623 L22: 1.9244 REMARK 3 L33: 4.8090 L12: 1.4516 REMARK 3 L13: 0.9752 L23: -0.3724 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.0096 S13: -0.0062 REMARK 3 S21: 0.0328 S22: -0.0012 S23: -0.2208 REMARK 3 S31: -0.0295 S32: 0.0520 S33: -0.1212 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 69:86) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7636 2.6459 29.3637 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0973 REMARK 3 T33: 0.1199 T12: -0.0090 REMARK 3 T13: -0.0007 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.2677 L22: 2.5602 REMARK 3 L33: 4.7587 L12: 0.0179 REMARK 3 L13: -0.8840 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.0113 S13: 0.1503 REMARK 3 S21: 0.0026 S22: 0.1591 S23: -0.2641 REMARK 3 S31: -0.1692 S32: 0.3259 S33: -0.1370 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 87:143) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4370 3.6175 15.2381 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1237 REMARK 3 T33: 0.2282 T12: 0.0117 REMARK 3 T13: 0.0088 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.8272 L22: 1.7221 REMARK 3 L33: 3.6541 L12: 0.4250 REMARK 3 L13: -0.8193 L23: -0.1357 REMARK 3 S TENSOR REMARK 3 S11: -0.1930 S12: 0.0640 S13: -0.3523 REMARK 3 S21: -0.0119 S22: -0.0293 S23: -0.2061 REMARK 3 S31: 0.2536 S32: 0.0265 S33: 0.1977 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 144:173) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9180 2.0848 6.8669 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1713 REMARK 3 T33: 0.1552 T12: 0.0282 REMARK 3 T13: 0.0356 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.6843 L22: 2.6946 REMARK 3 L33: 2.7738 L12: 1.2925 REMARK 3 L13: -0.5932 L23: -0.9999 REMARK 3 S TENSOR REMARK 3 S11: -0.2598 S12: 0.3034 S13: -0.2540 REMARK 3 S21: -0.2991 S22: -0.0335 S23: -0.4535 REMARK 3 S31: 0.2858 S32: 0.3937 S33: 0.2647 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 174:185) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8950 0.7953 -1.5042 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.2055 REMARK 3 T33: 0.1193 T12: 0.0077 REMARK 3 T13: -0.0001 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 9.2022 L22: 6.1712 REMARK 3 L33: 2.0123 L12: -1.8939 REMARK 3 L13: 3.0253 L23: -0.6842 REMARK 3 S TENSOR REMARK 3 S11: 0.4004 S12: 0.6999 S13: -0.4281 REMARK 3 S21: -0.5685 S22: -0.1255 S23: 0.0990 REMARK 3 S31: 0.7287 S32: -0.2906 S33: -0.2464 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 186:212) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0498 8.3774 0.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1407 REMARK 3 T33: 0.0688 T12: -0.0183 REMARK 3 T13: 0.0199 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 4.7849 L22: 2.7156 REMARK 3 L33: 3.2133 L12: -0.8457 REMARK 3 L13: 1.2278 L23: -0.4177 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.4786 S13: 0.1321 REMARK 3 S21: -0.3949 S22: -0.1095 S23: -0.0968 REMARK 3 S31: 0.0899 S32: 0.1715 S33: 0.1477 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 213:255) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6821 12.2984 9.0744 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0793 REMARK 3 T33: 0.0418 T12: -0.0126 REMARK 3 T13: -0.0130 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.6839 L22: 4.0444 REMARK 3 L33: 3.2933 L12: -0.9922 REMARK 3 L13: 0.0539 L23: -0.2182 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.0262 S13: 0.0432 REMARK 3 S21: -0.1260 S22: -0.0315 S23: 0.0588 REMARK 3 S31: -0.0548 S32: 0.0023 S33: 0.0913 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 256:281) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8274 1.2310 32.7221 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.0772 REMARK 3 T33: 0.0877 T12: -0.0085 REMARK 3 T13: -0.0038 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.9109 L22: 1.6571 REMARK 3 L33: 3.1321 L12: -0.7079 REMARK 3 L13: -0.2661 L23: 0.6744 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.1242 S13: -0.0097 REMARK 3 S21: 0.1476 S22: 0.0548 S23: 0.0001 REMARK 3 S31: 0.1547 S32: -0.2410 S33: -0.0367 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 282:299) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5031 10.9917 25.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.2429 REMARK 3 T33: 0.3233 T12: 0.0013 REMARK 3 T13: -0.0398 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 4.5183 L22: 5.8349 REMARK 3 L33: 2.0216 L12: 1.3357 REMARK 3 L13: -0.9788 L23: -4.0494 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.0547 S13: -0.0358 REMARK 3 S21: 0.4264 S22: -0.1567 S23: -0.4480 REMARK 3 S31: -0.9429 S32: 0.4717 S33: 0.0985 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, 30% PEG 4000, 5 MM ASP, 10 MM DHAP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 574 O HOH A 755 2.07 REMARK 500 O HOH A 536 O HOH A 728 2.12 REMARK 500 O HOH A 607 O HOH A 612 2.13 REMARK 500 O HOH A 792 O HOH A 793 2.15 REMARK 500 O HOH A 516 O HOH A 605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 138 144.89 -174.36 REMARK 500 PRO A 165 -153.39 -73.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 799 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 83 SG REMARK 620 2 SF4 A 402 S1 123.2 REMARK 620 3 SF4 A 402 S3 113.2 103.7 REMARK 620 4 SF4 A 402 S4 107.6 103.9 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 170 SG REMARK 620 2 SF4 A 402 S1 121.9 REMARK 620 3 SF4 A 402 S2 111.2 103.7 REMARK 620 4 SF4 A 402 S4 109.9 104.5 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 SF4 A 402 S1 118.1 REMARK 620 3 SF4 A 402 S2 115.0 104.2 REMARK 620 4 SF4 A 402 S3 115.7 102.3 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 13P A 401 O3 REMARK 620 2 SF4 A 402 S2 123.8 REMARK 620 3 SF4 A 402 S3 90.2 99.1 REMARK 620 4 SF4 A 402 S4 127.8 103.8 103.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZK6 RELATED DB: PDB REMARK 900 COMPLEX WITH PRODUCT OF REACTION: QUINOLINIC ACID. REMARK 900 RELATED ID: 4ZKZ RELATED DB: PDB REMARK 900 COMPLEX WITH ONE OF THE SUBSTRATE OF REACTION: IMINOASPARTATE. REMARK 900 RELATED ID: 5FFK RELATED DB: PDB REMARK 900 RELATED ID: 5FEV RELATED DB: PDB REMARK 900 RELATED ID: 5FEU RELATED DB: PDB DBREF 6NSO A 1 300 UNP O57767 NADA_PYRHO 1 300 SEQRES 1 A 300 MET ASP LEU VAL GLU GLU ILE LEU ARG LEU LYS GLU GLU SEQRES 2 A 300 ARG ASN ALA ILE ILE LEU ALA HIS ASN TYR GLN LEU PRO SEQRES 3 A 300 GLU VAL GLN ASP ILE ALA ASP PHE ILE GLY ASP SER LEU SEQRES 4 A 300 GLU LEU ALA ARG ARG ALA THR ARG VAL ASP ALA ASP VAL SEQRES 5 A 300 ILE VAL PHE ALA GLY VAL ASP PHE MET ALA GLU THR ALA SEQRES 6 A 300 LYS ILE LEU ASN PRO ASP LYS VAL VAL LEU ILE PRO SER SEQRES 7 A 300 ARG GLU ALA THR CYS ALA MET ALA ASN MET LEU LYS VAL SEQRES 8 A 300 GLU HIS ILE LEU GLU ALA LYS ARG LYS TYR PRO ASN ALA SEQRES 9 A 300 PRO VAL VAL LEU TYR VAL ASN SER THR ALA GLU ALA LYS SEQRES 10 A 300 ALA TYR ALA ASP VAL THR VAL THR SER ALA ASN ALA VAL SEQRES 11 A 300 GLU VAL VAL LYS LYS LEU ASP SER ASP VAL VAL ILE PHE SEQRES 12 A 300 GLY PRO ASP LYS ASN LEU ALA HIS TYR VAL ALA LYS MET SEQRES 13 A 300 THR GLY LYS LYS ILE ILE PRO VAL PRO SER LYS GLY HIS SEQRES 14 A 300 CYS TYR VAL HIS GLN LYS PHE THR LEU ASP ASP VAL GLU SEQRES 15 A 300 ARG ALA LYS LYS LEU HIS PRO ASN ALA LYS LEU MET ILE SEQRES 16 A 300 HIS PRO GLU CYS ILE PRO GLU VAL GLN GLU LYS ALA ASP SEQRES 17 A 300 ILE ILE ALA SER THR GLY GLY MET ILE LYS ARG ALA CYS SEQRES 18 A 300 GLU TRP ASP GLU TRP VAL VAL PHE THR GLU ARG GLU MET SEQRES 19 A 300 VAL TYR ARG LEU ARG LYS LEU TYR PRO GLN LYS LYS PHE SEQRES 20 A 300 TYR PRO ALA ARG GLU ASP ALA PHE CYS ILE GLY MET LYS SEQRES 21 A 300 ALA ILE THR LEU LYS ASN ILE TYR GLU SER LEU LYS ASP SEQRES 22 A 300 MET LYS TYR LYS VAL GLU VAL PRO GLU GLU ILE ALA ARG SEQRES 23 A 300 LYS ALA ARG LYS ALA ILE GLU ARG MET LEU GLU MET SER SEQRES 24 A 300 LYS HET 13P A 401 10 HET SF4 A 402 8 HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 2 13P C3 H7 O6 P FORMUL 3 SF4 FE4 S4 FORMUL 4 HOH *299(H2 O) HELIX 1 AA1 ASP A 2 ASN A 15 1 14 HELIX 2 AA2 LEU A 25 ASP A 30 1 6 HELIX 3 AA3 ASP A 37 ALA A 45 1 9 HELIX 4 AA4 VAL A 58 ASN A 69 1 12 HELIX 5 AA5 MET A 85 LEU A 89 5 5 HELIX 6 AA6 LYS A 90 TYR A 101 1 12 HELIX 7 AA7 THR A 113 ALA A 118 1 6 HELIX 8 AA8 ASN A 128 LEU A 136 1 9 HELIX 9 AA9 ASP A 146 GLY A 158 1 13 HELIX 10 AB1 VAL A 172 PHE A 176 5 5 HELIX 11 AB2 THR A 177 HIS A 188 1 12 HELIX 12 AB3 ILE A 200 GLU A 205 1 6 HELIX 13 AB4 SER A 212 ALA A 220 1 9 HELIX 14 AB5 CYS A 221 TRP A 223 5 3 HELIX 15 AB6 ARG A 232 TYR A 242 1 11 HELIX 16 AB7 GLY A 258 ILE A 262 5 5 HELIX 17 AB8 THR A 263 MET A 274 1 12 HELIX 18 AB9 PRO A 281 MET A 298 1 18 SHEET 1 AA1 4 PHE A 34 GLY A 36 0 SHEET 2 AA1 4 ALA A 16 HIS A 21 1 N ALA A 20 O PHE A 34 SHEET 3 AA1 4 VAL A 52 ALA A 56 1 O ALA A 56 N LEU A 19 SHEET 4 AA1 4 VAL A 73 LEU A 75 1 O LEU A 75 N ILE A 53 SHEET 1 AA2 4 VAL A 122 VAL A 124 0 SHEET 2 AA2 4 VAL A 106 TYR A 109 1 N LEU A 108 O VAL A 124 SHEET 3 AA2 4 VAL A 140 GLY A 144 1 O ILE A 142 N VAL A 107 SHEET 4 AA2 4 LYS A 160 PRO A 163 1 O ILE A 162 N VAL A 141 SHEET 1 AA3 4 ILE A 209 ILE A 210 0 SHEET 2 AA3 4 LYS A 192 ILE A 195 1 N ILE A 195 O ILE A 209 SHEET 3 AA3 4 GLU A 225 PHE A 229 1 O PHE A 229 N MET A 194 SHEET 4 AA3 4 LYS A 246 PRO A 249 1 O TYR A 248 N VAL A 228 LINK SG CYS A 83 FE2 SF4 A 402 1555 1555 2.37 LINK SG CYS A 170 FE3 SF4 A 402 1555 1555 2.43 LINK SG CYS A 256 FE4 SF4 A 402 1555 1555 2.36 LINK O3 13P A 401 FE1 SF4 A 402 1555 1555 2.34 CISPEP 1 GLY A 144 PRO A 145 0 6.30 CISPEP 2 VAL A 164 PRO A 165 0 -10.53 CISPEP 3 LYS A 275 TYR A 276 0 -8.88 SITE 1 AC1 14 HIS A 21 TYR A 23 ASP A 37 SER A 38 SITE 2 AC1 14 MET A 61 ASN A 111 SER A 126 HIS A 173 SITE 3 AC1 14 HIS A 196 GLU A 198 SER A 212 THR A 213 SITE 4 AC1 14 SF4 A 402 HOH A 595 SITE 1 AC2 7 CYS A 83 MET A 85 ASN A 111 CYS A 170 SITE 2 AC2 7 GLU A 198 CYS A 256 13P A 401 CRYST1 47.400 52.790 55.640 90.00 112.07 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021097 0.000000 0.008554 0.00000 SCALE2 0.000000 0.018943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019394 0.00000