HEADER TRANSFERASE 25-JAN-19 6NSU TITLE CRYSTALLOGRAPHIC CAPTURE OF QUINOLINATE SYNTHASE (NADA) FROM TITLE 2 PYROCOCCUS HORIKOSHII IN ITS SUBSTRATES AND PRODUCT-BOUND STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII (STRAIN ATCC 700860 / DSM SOURCE 3 12428 / JCM 9974 / NBRC 100139 / OT-3); SOURCE 4 ORGANISM_TAXID: 70601; SOURCE 5 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 6 GENE: NADA, PH0013; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ESAKOVA,T.L.GROVE,A.SILAKOV,N.H.YENNAWAR,S.J.BOOKER REVDAT 4 13-MAR-24 6NSU 1 REMARK REVDAT 3 20-NOV-19 6NSU 1 REMARK REVDAT 2 25-SEP-19 6NSU 1 JRNL REVDAT 1 21-AUG-19 6NSU 0 JRNL AUTH O.A.ESAKOVA,A.SILAKOV,T.L.GROVE,D.M.WARUI,N.H.YENNAWAR, JRNL AUTH 2 S.J.BOOKER JRNL TITL AN UNEXPECTED SPECIES DETERMINED BY X-RAY CRYSTALLOGRAPHY JRNL TITL 2 THAT MAY REPRESENT AN INTERMEDIATE IN THE REACTION CATALYZED JRNL TITL 3 BY QUINOLINATE SYNTHASE. JRNL REF J.AM.CHEM.SOC. V. 141 14142 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 31390192 JRNL DOI 10.1021/JACS.9B02513 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 13170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7459 - 4.4331 1.00 1378 155 0.1597 0.1802 REMARK 3 2 4.4331 - 3.5190 1.00 1361 148 0.1640 0.2139 REMARK 3 3 3.5190 - 3.0743 1.00 1334 151 0.2151 0.2647 REMARK 3 4 3.0743 - 2.7932 1.00 1328 152 0.2571 0.2701 REMARK 3 5 2.7932 - 2.5930 0.99 1332 142 0.2534 0.3208 REMARK 3 6 2.5930 - 2.4401 0.99 1309 147 0.2621 0.2897 REMARK 3 7 2.4401 - 2.3179 0.99 1338 152 0.2770 0.3273 REMARK 3 8 2.3179 - 2.2170 0.99 1291 144 0.2945 0.3321 REMARK 3 9 2.2170 - 2.1317 0.88 1178 130 0.3230 0.3652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2481 REMARK 3 ANGLE : 0.468 3356 REMARK 3 CHIRALITY : 0.043 379 REMARK 3 PLANARITY : 0.003 424 REMARK 3 DIHEDRAL : 14.393 1562 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:13) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6851 10.3106 85.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.5183 T22: 0.5813 REMARK 3 T33: 0.6772 T12: 0.1228 REMARK 3 T13: 0.0987 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 9.9313 L22: 2.0121 REMARK 3 L33: 6.1275 L12: 9.8773 REMARK 3 L13: 7.4305 L23: 6.1944 REMARK 3 S TENSOR REMARK 3 S11: 0.6341 S12: -0.8312 S13: 1.0260 REMARK 3 S21: 1.5123 S22: -1.1070 S23: 1.8267 REMARK 3 S31: -0.0784 S32: -1.7213 S33: 0.5040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 14:36) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9926 10.1830 73.7244 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.2011 REMARK 3 T33: 0.3590 T12: 0.0364 REMARK 3 T13: -0.0513 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.3191 L22: 2.7260 REMARK 3 L33: 7.3515 L12: -2.2262 REMARK 3 L13: 1.4398 L23: -2.4420 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: -0.1175 S13: -0.0593 REMARK 3 S21: 0.1381 S22: -0.0391 S23: -0.0189 REMARK 3 S31: -0.6535 S32: -0.5047 S33: 0.1384 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 37:85) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6184 7.9771 76.1057 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.2291 REMARK 3 T33: 0.3467 T12: 0.0467 REMARK 3 T13: -0.0728 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 6.9607 L22: 8.5034 REMARK 3 L33: 8.2551 L12: 2.2807 REMARK 3 L13: 0.0038 L23: 2.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.1949 S12: 0.0225 S13: 0.7522 REMARK 3 S21: -0.0607 S22: 0.1234 S23: -0.5312 REMARK 3 S31: -0.8197 S32: 0.3805 S33: 0.0617 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 86:108) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4318 -2.9519 62.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.2685 T22: 0.3648 REMARK 3 T33: 0.3974 T12: 0.0307 REMARK 3 T13: -0.0636 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 5.5180 L22: 8.1130 REMARK 3 L33: 6.9673 L12: 4.1034 REMARK 3 L13: -5.9169 L23: -2.6000 REMARK 3 S TENSOR REMARK 3 S11: -0.1614 S12: -0.4467 S13: -0.9130 REMARK 3 S21: 0.5411 S22: -0.0474 S23: -0.3477 REMARK 3 S31: 0.0738 S32: 0.6757 S33: 0.2616 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 109:142) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0043 7.7063 62.2159 REMARK 3 T TENSOR REMARK 3 T11: 0.3098 T22: 0.5810 REMARK 3 T33: 0.4486 T12: -0.0285 REMARK 3 T13: -0.1163 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 3.2751 L22: 9.7437 REMARK 3 L33: 4.3455 L12: 1.3976 REMARK 3 L13: -2.0018 L23: -0.5114 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.7576 S13: 0.8653 REMARK 3 S21: 0.3853 S22: -0.4899 S23: 0.3582 REMARK 3 S31: -0.4382 S32: 0.2780 S33: 0.5102 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 143:151) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4904 1.4283 55.2952 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.3231 REMARK 3 T33: 0.4272 T12: 0.0574 REMARK 3 T13: 0.0407 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 9.3480 L22: 6.9786 REMARK 3 L33: 8.3241 L12: -3.1480 REMARK 3 L13: 6.6704 L23: -6.8399 REMARK 3 S TENSOR REMARK 3 S11: -0.2183 S12: -0.5062 S13: 0.3909 REMARK 3 S21: -0.1915 S22: 0.2538 S23: -0.1313 REMARK 3 S31: -0.1099 S32: -0.4747 S33: -0.0824 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 152:261) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8952 6.4899 53.2536 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.2135 REMARK 3 T33: 0.1893 T12: -0.0319 REMARK 3 T13: -0.0134 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.4970 L22: 2.5295 REMARK 3 L33: 1.9206 L12: -2.1677 REMARK 3 L13: -0.1162 L23: -0.7106 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: 0.5319 S13: 0.1607 REMARK 3 S21: -0.3599 S22: -0.1496 S23: -0.1332 REMARK 3 S31: -0.0039 S32: -0.0220 S33: 0.0340 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 262:279) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6811 1.3398 83.2802 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.1939 REMARK 3 T33: 0.3370 T12: 0.0012 REMARK 3 T13: 0.0145 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 5.5706 L22: 6.0487 REMARK 3 L33: 5.1304 L12: -3.8634 REMARK 3 L13: 1.4377 L23: 1.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.1959 S12: -0.3466 S13: -0.5149 REMARK 3 S21: 0.5509 S22: -0.0694 S23: 0.6010 REMARK 3 S31: 0.4800 S32: -0.1559 S33: -0.1476 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 280:288) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9069 4.7615 79.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.5560 T22: 0.9709 REMARK 3 T33: 0.6628 T12: 0.0278 REMARK 3 T13: -0.0403 T23: -0.2457 REMARK 3 L TENSOR REMARK 3 L11: 7.5190 L22: 2.0022 REMARK 3 L33: 2.0032 L12: 8.7791 REMARK 3 L13: -7.0687 L23: -4.2864 REMARK 3 S TENSOR REMARK 3 S11: -0.2573 S12: -1.0095 S13: -0.4364 REMARK 3 S21: 0.2538 S22: 0.5189 S23: -1.3797 REMARK 3 S31: -0.1059 S32: 2.7847 S33: -0.2269 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 289:299) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6581 14.5498 69.0337 REMARK 3 T TENSOR REMARK 3 T11: 0.6047 T22: 0.8232 REMARK 3 T33: 0.6661 T12: 0.0042 REMARK 3 T13: -0.2442 T23: -0.2824 REMARK 3 L TENSOR REMARK 3 L11: 8.1346 L22: 5.3504 REMARK 3 L33: 3.3886 L12: -0.4779 REMARK 3 L13: 0.4563 L23: -4.2566 REMARK 3 S TENSOR REMARK 3 S11: -0.6694 S12: -0.2237 S13: 1.0563 REMARK 3 S21: 0.3054 S22: 0.2209 S23: -0.1574 REMARK 3 S31: -1.1214 S32: 1.4316 S33: 0.4364 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.5, 12% PEG 20000, 0.2 REMARK 280 MM FAD, 5 MM ASPARTATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.14900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 111 75.69 -67.67 REMARK 500 PRO A 165 -168.78 -78.26 REMARK 500 PHE A 229 74.97 -100.58 REMARK 500 THR A 230 -167.31 -161.80 REMARK 500 MET A 298 59.94 -97.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 83 SG REMARK 620 2 SF4 A 401 S1 129.6 REMARK 620 3 SF4 A 401 S3 128.3 90.4 REMARK 620 4 SF4 A 401 S4 116.3 90.2 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 170 SG REMARK 620 2 SF4 A 401 S1 138.3 REMARK 620 3 SF4 A 401 S2 115.5 90.2 REMARK 620 4 SF4 A 401 S4 119.8 90.3 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 SF4 A 401 S1 124.5 REMARK 620 3 SF4 A 401 S2 128.5 90.2 REMARK 620 4 SF4 A 401 S3 122.2 90.3 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DYA A 402 OD1 REMARK 620 2 SF4 A 401 S2 132.5 REMARK 620 3 SF4 A 401 S3 104.3 90.1 REMARK 620 4 SF4 A 401 S4 133.3 90.5 90.5 REMARK 620 5 DYA A 402 OD2 50.5 134.3 135.5 88.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NSO RELATED DB: PDB REMARK 900 RELATED ID: 4ZKZ RELATED DB: PDB REMARK 900 RELATED ID: 5FEV RELATED DB: PDB REMARK 900 RELATED ID: 5FEK RELATED DB: PDB REMARK 900 RELATED ID: 5FEU RELATED DB: PDB REMARK 900 RELATED ID: 4ZK6 RELATED DB: PDB DBREF 6NSU A 1 300 UNP O57767 NADA_PYRHO 1 300 SEQRES 1 A 300 MET ASP LEU VAL GLU GLU ILE LEU ARG LEU LYS GLU GLU SEQRES 2 A 300 ARG ASN ALA ILE ILE LEU ALA HIS ASN TYR GLN LEU PRO SEQRES 3 A 300 GLU VAL GLN ASP ILE ALA ASP PHE ILE GLY ASP SER LEU SEQRES 4 A 300 GLU LEU ALA ARG ARG ALA THR ARG VAL ASP ALA ASP VAL SEQRES 5 A 300 ILE VAL PHE ALA GLY VAL ASP PHE MET ALA GLU THR ALA SEQRES 6 A 300 LYS ILE LEU ASN PRO ASP LYS VAL VAL LEU ILE PRO SER SEQRES 7 A 300 ARG GLU ALA THR CYS ALA MET ALA ASN MET LEU LYS VAL SEQRES 8 A 300 GLU HIS ILE LEU GLU ALA LYS ARG LYS TYR PRO ASN ALA SEQRES 9 A 300 PRO VAL VAL LEU TYR VAL ASN SER THR ALA GLU ALA LYS SEQRES 10 A 300 ALA TYR ALA ASP VAL THR VAL THR SER ALA ASN ALA VAL SEQRES 11 A 300 GLU VAL VAL LYS LYS LEU ASP SER ASP VAL VAL ILE PHE SEQRES 12 A 300 GLY PRO ASP LYS ASN LEU ALA HIS TYR VAL ALA LYS MET SEQRES 13 A 300 THR GLY LYS LYS ILE ILE PRO VAL PRO SER LYS GLY HIS SEQRES 14 A 300 CYS TYR VAL HIS GLN LYS PHE THR LEU ASP ASP VAL GLU SEQRES 15 A 300 ARG ALA LYS LYS LEU HIS PRO ASN ALA LYS LEU MET ILE SEQRES 16 A 300 HIS PRO GLU CYS ILE PRO GLU VAL GLN GLU LYS ALA ASP SEQRES 17 A 300 ILE ILE ALA SER THR GLY GLY MET ILE LYS ARG ALA CYS SEQRES 18 A 300 GLU TRP ASP GLU TRP VAL VAL PHE THR GLU ARG GLU MET SEQRES 19 A 300 VAL TYR ARG LEU ARG LYS LEU TYR PRO GLN LYS LYS PHE SEQRES 20 A 300 TYR PRO ALA ARG GLU ASP ALA PHE CYS ILE GLY MET LYS SEQRES 21 A 300 ALA ILE THR LEU LYS ASN ILE TYR GLU SER LEU LYS ASP SEQRES 22 A 300 MET LYS TYR LYS VAL GLU VAL PRO GLU GLU ILE ALA ARG SEQRES 23 A 300 LYS ALA ARG LYS ALA ILE GLU ARG MET LEU GLU MET SER SEQRES 24 A 300 LYS HET SF4 A 401 8 HET DYA A 402 9 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM DYA DIDEHYDROASPARTATE FORMUL 2 SF4 FE4 S4 FORMUL 3 DYA C4 H5 N O4 FORMUL 4 HOH *43(H2 O) HELIX 1 AA1 ASP A 2 ARG A 14 1 13 HELIX 2 AA2 LEU A 25 ASP A 30 1 6 HELIX 3 AA3 ASP A 37 THR A 46 1 10 HELIX 4 AA4 VAL A 58 ASN A 69 1 12 HELIX 5 AA5 MET A 85 LEU A 89 5 5 HELIX 6 AA6 LYS A 90 TYR A 101 1 12 HELIX 7 AA7 THR A 113 ALA A 118 1 6 HELIX 8 AA8 ASN A 128 LYS A 135 1 8 HELIX 9 AA9 ASP A 146 GLY A 158 1 13 HELIX 10 AB1 CYS A 170 LYS A 175 1 6 HELIX 11 AB2 THR A 177 HIS A 188 1 12 HELIX 12 AB3 ILE A 200 GLU A 205 1 6 HELIX 13 AB4 SER A 212 ALA A 220 1 9 HELIX 14 AB5 CYS A 221 TRP A 223 5 3 HELIX 15 AB6 ARG A 232 TYR A 242 1 11 HELIX 16 AB7 CYS A 256 ALA A 261 1 6 HELIX 17 AB8 THR A 263 MET A 274 1 12 HELIX 18 AB9 PRO A 281 MET A 298 1 18 SHEET 1 AA1 4 PHE A 34 GLY A 36 0 SHEET 2 AA1 4 ALA A 16 HIS A 21 1 N ALA A 20 O PHE A 34 SHEET 3 AA1 4 VAL A 52 ALA A 56 1 O ALA A 56 N LEU A 19 SHEET 4 AA1 4 VAL A 73 LEU A 75 1 O LEU A 75 N ILE A 53 SHEET 1 AA2 4 VAL A 122 VAL A 124 0 SHEET 2 AA2 4 VAL A 106 TYR A 109 1 N LEU A 108 O VAL A 124 SHEET 3 AA2 4 VAL A 140 GLY A 144 1 O GLY A 144 N TYR A 109 SHEET 4 AA2 4 LYS A 160 PRO A 163 1 O ILE A 162 N VAL A 141 SHEET 1 AA3 4 ILE A 209 ILE A 210 0 SHEET 2 AA3 4 LYS A 192 ILE A 195 1 N LEU A 193 O ILE A 209 SHEET 3 AA3 4 GLU A 225 PHE A 229 1 O PHE A 229 N MET A 194 SHEET 4 AA3 4 LYS A 246 PRO A 249 1 O TYR A 248 N VAL A 228 LINK SG CYS A 83 FE2 SF4 A 401 1555 1555 2.29 LINK SG CYS A 170 FE3 SF4 A 401 1555 1555 2.28 LINK SG CYS A 256 FE4 SF4 A 401 1555 1555 2.28 LINK FE1 SF4 A 401 OD1 DYA A 402 1555 1555 1.99 LINK FE1 SF4 A 401 OD2 DYA A 402 1555 1555 2.69 CISPEP 1 GLY A 144 PRO A 145 0 -0.80 CISPEP 2 VAL A 164 PRO A 165 0 -0.29 CISPEP 3 LYS A 275 TYR A 276 0 -3.97 SITE 1 AC1 5 CYS A 83 ASN A 111 CYS A 170 CYS A 256 SITE 2 AC1 5 DYA A 402 SITE 1 AC2 11 HIS A 21 TYR A 23 ASP A 37 TYR A 109 SITE 2 AC2 11 ASN A 111 SER A 126 HIS A 196 GLU A 198 SITE 3 AC2 11 SER A 212 THR A 213 SF4 A 401 CRYST1 47.258 52.298 53.580 90.00 114.56 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021160 0.000000 0.009669 0.00000 SCALE2 0.000000 0.019121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020520 0.00000