HEADER TRANSFERASE/PROTEIN BINDING 28-JAN-19 6NTD TITLE CRYSTAL STRUCTURE OF G12V HRAS-GPPNHP BOUND IN COMPLEX WITH THE TITLE 2 ENGINEERED RBD VARIANT 12 OF CRAF KINASE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PROTO-ONCOGENE C-RAF,CRAF,RAF-1; COMPND 11 EC: 2.7.11.1; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAF1, RAF; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFFINITY REAGENT, ENGINEERED PROTEIN, RAS INHIBITOR, TRANSFERASE- KEYWDS 2 PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.MAISONNEUVE,I.KURINOV,S.WIECHMANN,A.ERNST,F.SICHERI REVDAT 3 11-OCT-23 6NTD 1 REMARK REVDAT 2 15-APR-20 6NTD 1 JRNL REVDAT 1 04-MAR-20 6NTD 0 JRNL AUTH S.WIECHMANN,P.MAISONNEUVE,B.M.GREBBIN,M.HOFFMEISTER, JRNL AUTH 2 M.KAULICH,H.CLEVERS,K.RAJALINGAM,I.KURINOV,H.F.FARIN, JRNL AUTH 3 F.SICHERI,A.ERNST JRNL TITL CONFORMATION-SPECIFIC INHIBITORS OF ACTIVATED RAS GTPASES JRNL TITL 2 REVEAL LIMITED RAS DEPENDENCY OF PATIENT-DERIVED CANCER JRNL TITL 3 ORGANOIDS. JRNL REF J.BIOL.CHEM. V. 295 4526 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32086379 JRNL DOI 10.1074/JBC.RA119.011025 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 6892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.330 REMARK 3 FREE R VALUE TEST SET COUNT : 367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.3100 - 3.1500 0.96 2059 114 0.3710 0.3713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 152.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1083 -1.2150 -15.3503 REMARK 3 T TENSOR REMARK 3 T11: 0.7037 T22: 0.7666 REMARK 3 T33: 1.4714 T12: -0.0599 REMARK 3 T13: -0.4148 T23: 0.1428 REMARK 3 L TENSOR REMARK 3 L11: 3.6981 L22: 3.9845 REMARK 3 L33: 5.4271 L12: 0.1170 REMARK 3 L13: 0.9355 L23: 1.7433 REMARK 3 S TENSOR REMARK 3 S11: 0.4771 S12: 1.8981 S13: 0.6251 REMARK 3 S21: -2.0665 S22: -0.1278 S23: -1.2284 REMARK 3 S31: -0.2468 S32: 0.2052 S33: 0.1433 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7623 -8.6568 -19.3492 REMARK 3 T TENSOR REMARK 3 T11: 1.7840 T22: 1.5274 REMARK 3 T33: 1.4485 T12: 0.1048 REMARK 3 T13: -0.4198 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 6.1958 L22: 6.3276 REMARK 3 L33: 4.8591 L12: 5.0033 REMARK 3 L13: -4.6203 L23: -2.9079 REMARK 3 S TENSOR REMARK 3 S11: -0.9603 S12: 1.5993 S13: 0.1434 REMARK 3 S21: 1.0257 S22: 0.1165 S23: 2.0975 REMARK 3 S31: 0.9091 S32: -3.0368 S33: -0.7647 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5836 4.6878 -15.7323 REMARK 3 T TENSOR REMARK 3 T11: 1.1059 T22: 1.0457 REMARK 3 T33: 0.8970 T12: 0.3688 REMARK 3 T13: -0.0371 T23: 0.2764 REMARK 3 L TENSOR REMARK 3 L11: 7.9577 L22: 3.3725 REMARK 3 L33: 6.2450 L12: -3.0781 REMARK 3 L13: -2.4915 L23: 1.5893 REMARK 3 S TENSOR REMARK 3 S11: -0.2578 S12: 1.5458 S13: 1.2831 REMARK 3 S21: 0.3142 S22: -0.0044 S23: 0.1113 REMARK 3 S31: -1.7277 S32: 0.4562 S33: 0.1060 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.0611 -6.2674 -25.6646 REMARK 3 T TENSOR REMARK 3 T11: 1.9379 T22: 2.1336 REMARK 3 T33: 2.5825 T12: 0.5304 REMARK 3 T13: 0.5146 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.0956 L22: 5.7410 REMARK 3 L33: 5.9108 L12: 2.6726 REMARK 3 L13: -1.6255 L23: -5.2875 REMARK 3 S TENSOR REMARK 3 S11: -1.7289 S12: -0.6807 S13: -2.1937 REMARK 3 S21: -2.1682 S22: 1.3277 S23: 2.7871 REMARK 3 S31: 0.5037 S32: 2.0620 S33: -0.2410 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.2846 -10.7488 -13.9319 REMARK 3 T TENSOR REMARK 3 T11: 0.6187 T22: 1.0009 REMARK 3 T33: 1.3989 T12: 0.2055 REMARK 3 T13: 0.1032 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 3.9966 L22: 6.4884 REMARK 3 L33: 8.7622 L12: -1.3231 REMARK 3 L13: -0.3310 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.3854 S12: 0.8490 S13: 0.3008 REMARK 3 S21: -0.4114 S22: 0.3229 S23: -0.5963 REMARK 3 S31: 0.7731 S32: 0.7285 S33: -0.8694 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6392 -4.5645 -9.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.8759 T22: 0.8766 REMARK 3 T33: 1.6015 T12: -0.0123 REMARK 3 T13: 0.2337 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 5.0731 L22: 5.4906 REMARK 3 L33: 2.3422 L12: -4.9980 REMARK 3 L13: 1.1181 L23: 0.3460 REMARK 3 S TENSOR REMARK 3 S11: 0.4400 S12: 0.6875 S13: 1.0377 REMARK 3 S21: -0.7232 S22: -0.1492 S23: 0.1893 REMARK 3 S31: -0.6599 S32: 0.4022 S33: -0.7558 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6999 -18.9975 -4.7438 REMARK 3 T TENSOR REMARK 3 T11: 1.2602 T22: 0.8453 REMARK 3 T33: 2.9071 T12: 0.0258 REMARK 3 T13: -0.1369 T23: -0.2937 REMARK 3 L TENSOR REMARK 3 L11: 1.7647 L22: 1.0995 REMARK 3 L33: 0.8571 L12: 1.3863 REMARK 3 L13: -0.7038 L23: -0.4585 REMARK 3 S TENSOR REMARK 3 S11: 0.6739 S12: 0.4403 S13: 0.3491 REMARK 3 S21: 0.2288 S22: 0.4305 S23: 1.0487 REMARK 3 S31: 0.7840 S32: -0.0440 S33: -0.2352 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0010 -10.1863 -3.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.9781 T22: 0.6242 REMARK 3 T33: 1.6427 T12: 0.1757 REMARK 3 T13: -0.2251 T23: 0.1456 REMARK 3 L TENSOR REMARK 3 L11: 3.9603 L22: 2.6500 REMARK 3 L33: 2.5643 L12: -2.8160 REMARK 3 L13: 0.8323 L23: 0.2939 REMARK 3 S TENSOR REMARK 3 S11: 0.7306 S12: 1.9054 S13: -0.4166 REMARK 3 S21: 1.7884 S22: 0.2422 S23: 0.0036 REMARK 3 S31: 0.4856 S32: 0.2866 S33: -0.6798 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6619 3.1153 -6.2234 REMARK 3 T TENSOR REMARK 3 T11: 1.2378 T22: 0.6417 REMARK 3 T33: 1.5465 T12: -0.0162 REMARK 3 T13: -0.1568 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 9.5826 L22: 6.6430 REMARK 3 L33: 8.1957 L12: 7.8850 REMARK 3 L13: -8.5159 L23: -6.6362 REMARK 3 S TENSOR REMARK 3 S11: 0.9833 S12: -2.7654 S13: 0.2231 REMARK 3 S21: 0.8269 S22: -0.5627 S23: -0.1932 REMARK 3 S31: -2.4058 S32: 0.6573 S33: -0.4256 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6012 -2.3239 -34.9684 REMARK 3 T TENSOR REMARK 3 T11: 1.4896 T22: 3.2998 REMARK 3 T33: 1.3773 T12: 0.1330 REMARK 3 T13: -0.0784 T23: 0.4293 REMARK 3 L TENSOR REMARK 3 L11: 1.9653 L22: 6.8098 REMARK 3 L33: 9.9335 L12: 6.6370 REMARK 3 L13: -8.4883 L23: -0.9849 REMARK 3 S TENSOR REMARK 3 S11: -1.9374 S12: 1.6152 S13: 2.9600 REMARK 3 S21: -1.9429 S22: -2.1974 S23: 0.0427 REMARK 3 S31: 3.0797 S32: -2.4559 S33: -8.0222 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1732 -2.5860 -33.2728 REMARK 3 T TENSOR REMARK 3 T11: 1.1522 T22: 1.7490 REMARK 3 T33: 1.1994 T12: -0.1324 REMARK 3 T13: -0.2737 T23: 0.3173 REMARK 3 L TENSOR REMARK 3 L11: 8.9732 L22: 4.2939 REMARK 3 L33: 3.2230 L12: 2.3444 REMARK 3 L13: -2.5589 L23: 1.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.9306 S12: 1.6254 S13: -1.3297 REMARK 3 S21: -0.8220 S22: 1.3261 S23: -0.0787 REMARK 3 S31: 0.8705 S32: -1.5635 S33: -0.9982 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2150 1.0901 -32.4915 REMARK 3 T TENSOR REMARK 3 T11: 2.2344 T22: 3.6485 REMARK 3 T33: 1.2177 T12: 0.7961 REMARK 3 T13: -0.8830 T23: 1.1353 REMARK 3 L TENSOR REMARK 3 L11: 7.2221 L22: 1.6846 REMARK 3 L33: 0.0149 L12: -3.4631 REMARK 3 L13: -0.5648 L23: 0.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.6477 S12: 1.7471 S13: -1.1026 REMARK 3 S21: -1.2975 S22: -2.1520 S23: 0.9937 REMARK 3 S31: -2.4846 S32: -3.1375 S33: -6.9498 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8586 -4.8943 -44.5210 REMARK 3 T TENSOR REMARK 3 T11: 3.6367 T22: 1.6993 REMARK 3 T33: 1.7904 T12: -0.0912 REMARK 3 T13: 0.1545 T23: -0.5380 REMARK 3 L TENSOR REMARK 3 L11: 6.6593 L22: 1.9887 REMARK 3 L33: 8.9082 L12: -8.4763 REMARK 3 L13: 3.6245 L23: -3.3620 REMARK 3 S TENSOR REMARK 3 S11: 0.2272 S12: 3.7914 S13: -6.2693 REMARK 3 S21: -2.1338 S22: 0.1855 S23: 5.2638 REMARK 3 S31: 4.7926 S32: 2.1308 S33: 1.4168 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1980 2.8072 -38.2099 REMARK 3 T TENSOR REMARK 3 T11: 2.2491 T22: 2.0279 REMARK 3 T33: 1.2937 T12: -0.3197 REMARK 3 T13: 0.0124 T23: -0.1837 REMARK 3 L TENSOR REMARK 3 L11: 1.9661 L22: 8.5079 REMARK 3 L33: 7.2277 L12: 9.8736 REMARK 3 L13: 9.1297 L23: 7.8335 REMARK 3 S TENSOR REMARK 3 S11: -1.3761 S12: 5.2212 S13: -1.3411 REMARK 3 S21: -0.0809 S22: 3.1250 S23: -3.3979 REMARK 3 S31: -1.9005 S32: 3.3007 S33: -1.7350 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000239381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7192 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 79.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 200MM NH4SO4, 100MM NA REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.79500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.79500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.79500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.79500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.79500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 ASP A -1 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 MET B 53 REMARK 465 ASP B 54 REMARK 465 ARG B 100 REMARK 465 LEU B 101 REMARK 465 LEU B 102 REMARK 465 HIS B 103 REMARK 465 GLU B 104 REMARK 465 HIS B 105 REMARK 465 LYS B 106 REMARK 465 GLY B 107 REMARK 465 LYS B 108 REMARK 465 LYS B 109 REMARK 465 ALA B 110 REMARK 465 PHE B 130 REMARK 465 LEU B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 VAL A 29 CG1 CG2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 TYR A 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 67 CG SD CE REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 HIS A 94 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 SER B 55 OG REMARK 470 ASN B 56 CG OD1 ND2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 74 CG OD1 ND2 REMARK 470 MET B 76 CG SD CE REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 MET B 83 CG SD CE REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LEU B 86 CG CD1 CD2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LEU B 91 CG CD1 CD2 REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 PHE B 99 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 112 CG CD1 CD2 REMARK 470 ASP B 113 CG OD1 OD2 REMARK 470 TRP B 114 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 114 CZ3 CH2 REMARK 470 ASN B 115 CG OD1 ND2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 LEU B 126 CG CD1 CD2 REMARK 470 GLN B 127 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 -168.24 -76.43 REMARK 500 ILE A 36 -73.42 -89.77 REMARK 500 ALA A 59 -169.48 -105.00 REMARK 500 GLN A 61 -147.75 62.41 REMARK 500 MET A 67 30.05 -96.53 REMARK 500 ARG A 149 34.62 39.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 148.5 REMARK 620 3 GNP A 202 O1G 139.3 69.0 REMARK 620 4 GNP A 202 O3G 93.2 87.7 66.5 REMARK 620 5 GNP A 202 O1B 72.0 139.1 70.7 82.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 202 DBREF 6NTD A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6NTD B 55 131 UNP P04049 RAF1_HUMAN 55 131 SEQADV 6NTD GLY A -4 UNP P01112 EXPRESSION TAG SEQADV 6NTD ALA A -3 UNP P01112 EXPRESSION TAG SEQADV 6NTD MET A -2 UNP P01112 EXPRESSION TAG SEQADV 6NTD ASP A -1 UNP P01112 EXPRESSION TAG SEQADV 6NTD PRO A 0 UNP P01112 EXPRESSION TAG SEQADV 6NTD VAL A 12 UNP P01112 GLY 12 ENGINEERED MUTATION SEQADV 6NTD GLY B 51 UNP P04049 EXPRESSION TAG SEQADV 6NTD ALA B 52 UNP P04049 EXPRESSION TAG SEQADV 6NTD MET B 53 UNP P04049 EXPRESSION TAG SEQADV 6NTD ASP B 54 UNP P04049 EXPRESSION TAG SEQADV 6NTD LEU B 61 UNP P04049 PHE 61 ENGINEERED MUTATION SEQADV 6NTD HIS B 65 UNP P04049 LYS 65 ENGINEERED MUTATION SEQADV 6NTD GLU B 66 UNP P04049 GLN 66 ENGINEERED MUTATION SEQADV 6NTD LYS B 71 UNP P04049 ASN 71 ENGINEERED MUTATION SEQADV 6NTD SER B 81 UNP P04049 CYS 81 ENGINEERED MUTATION SEQADV 6NTD ARG B 88 UNP P04049 VAL 88 ENGINEERED MUTATION SEQADV 6NTD HIS B 89 UNP P04049 ARG 89 ENGINEERED MUTATION SEQADV 6NTD SER B 95 UNP P04049 CYS 95 ENGINEERED MUTATION SEQADV 6NTD SER B 96 UNP P04049 CYS 96 ENGINEERED MUTATION SEQRES 1 A 171 GLY ALA MET ASP PRO MET THR GLU TYR LYS LEU VAL VAL SEQRES 2 A 171 VAL GLY ALA VAL GLY VAL GLY LYS SER ALA LEU THR ILE SEQRES 3 A 171 GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO SEQRES 4 A 171 THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP SEQRES 5 A 171 GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY SEQRES 6 A 171 GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG SEQRES 7 A 171 THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN SEQRES 8 A 171 THR LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU GLN SEQRES 9 A 171 ILE LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET VAL SEQRES 10 A 171 LEU VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR VAL SEQRES 11 A 171 GLU SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR GLY SEQRES 12 A 171 ILE PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN GLY SEQRES 13 A 171 VAL GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG SEQRES 14 A 171 GLN HIS SEQRES 1 B 81 GLY ALA MET ASP SER ASN THR ILE ARG VAL LEU LEU PRO SEQRES 2 B 81 ASN HIS GLU ARG THR VAL VAL LYS VAL ARG ASN GLY MET SEQRES 3 B 81 SER LEU HIS ASP SER LEU MET LYS ALA LEU LYS ARG HIS SEQRES 4 B 81 GLY LEU GLN PRO GLU SER SER ALA VAL PHE ARG LEU LEU SEQRES 5 B 81 HIS GLU HIS LYS GLY LYS LYS ALA ARG LEU ASP TRP ASN SEQRES 6 B 81 THR ASP ALA ALA SER LEU ILE GLY GLU GLU LEU GLN VAL SEQRES 7 B 81 ASP PHE LEU HET MG A 201 1 HET GNP A 202 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG MG 2+ FORMUL 4 GNP C10 H17 N6 O13 P3 HELIX 1 AA1 GLY A 15 GLN A 25 1 11 HELIX 2 AA2 GLY A 60 GLY A 75 1 16 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 GLU A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLN A 165 1 15 HELIX 7 AA7 SER B 77 LEU B 82 1 6 HELIX 8 AA8 LEU B 82 GLY B 90 1 9 HELIX 9 AA9 ALA B 118 ILE B 122 5 5 SHEET 1 AA1 9 TYR A 141 GLU A 143 0 SHEET 2 AA1 9 MET A 111 ASN A 116 1 N LEU A 113 O ILE A 142 SHEET 3 AA1 9 GLY A 77 ALA A 83 1 N PHE A 82 O ASN A 116 SHEET 4 AA1 9 THR A 2 GLY A 10 1 N VAL A 7 O LEU A 79 SHEET 5 AA1 9 GLU A 49 ASP A 57 1 O ASP A 54 N LEU A 6 SHEET 6 AA1 9 GLU A 37 ILE A 46 -1 N ASP A 38 O ASP A 57 SHEET 7 AA1 9 GLU B 66 LYS B 71 -1 O ARG B 67 N SER A 39 SHEET 8 AA1 9 THR B 57 LEU B 62 -1 N VAL B 60 O THR B 68 SHEET 9 AA1 9 LEU B 126 GLN B 127 1 O LEU B 126 N LEU B 61 LINK OG SER A 17 MG MG A 201 1555 1555 2.71 LINK OG1 THR A 35 MG MG A 201 1555 1555 2.20 LINK MG MG A 201 O1G GNP A 202 1555 1555 2.44 LINK MG MG A 201 O3G GNP A 202 1555 1555 2.08 LINK MG MG A 201 O1B GNP A 202 1555 1555 2.58 SITE 1 AC1 4 SER A 17 THR A 35 ASP A 57 GNP A 202 SITE 1 AC2 22 VAL A 12 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 22 SER A 17 ALA A 18 ASP A 30 GLU A 31 SITE 3 AC2 22 TYR A 32 ASP A 33 PRO A 34 THR A 35 SITE 4 AC2 22 ASP A 57 THR A 58 ASN A 116 LYS A 117 SITE 5 AC2 22 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC2 22 LYS A 147 MG A 201 CRYST1 91.761 91.761 151.590 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010898 0.006292 0.000000 0.00000 SCALE2 0.000000 0.012584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006597 0.00000