HEADER HYDROLASE 31-JAN-19 6NU7 TITLE STRUCTURE OF SUCROSE-6-PHOSPHATE HYDROLASE FROM LACTOBACILLUS GASSERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE-6-PHOSPHATE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INVERTASE; COMPND 5 EC: 3.2.1.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS GASSERI 224-1; SOURCE 3 ORGANISM_TAXID: 679196; SOURCE 4 GENE: HMPREF9209_2365; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GH32, GLYCOSIDE HYDROLASE, LACTOBACILLUS GASSERI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.Z.T.LIMA,J.R.C.MUNIZ REVDAT 2 11-OCT-23 6NU7 1 LINK REVDAT 1 05-FEB-20 6NU7 0 JRNL AUTH M.Z.T.LIMA,J.R.C.MUNIZ JRNL TITL STRUCTURE OF SUCROSE-6-PHOSPHATE HYDROLASE FROM JRNL TITL 2 LACTOBACILLUS GASSERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0370 - 4.8809 0.99 2644 153 0.1712 0.1824 REMARK 3 2 4.8809 - 3.8747 0.99 2510 126 0.1230 0.1368 REMARK 3 3 3.8747 - 3.3851 0.99 2446 165 0.1408 0.1561 REMARK 3 4 3.3851 - 3.0757 1.00 2468 129 0.1468 0.2003 REMARK 3 5 3.0757 - 2.8553 1.00 2465 126 0.1668 0.2292 REMARK 3 6 2.8553 - 2.6869 1.00 2453 136 0.1664 0.1963 REMARK 3 7 2.6869 - 2.5524 1.00 2469 109 0.1617 0.2132 REMARK 3 8 2.5524 - 2.4413 1.00 2466 109 0.1664 0.2166 REMARK 3 9 2.4413 - 2.3473 1.00 2409 150 0.1653 0.2205 REMARK 3 10 2.3473 - 2.2663 1.00 2448 112 0.1575 0.2071 REMARK 3 11 2.2663 - 2.1955 1.00 2393 163 0.1640 0.2061 REMARK 3 12 2.1955 - 2.1327 1.00 2390 161 0.1653 0.2034 REMARK 3 13 2.1327 - 2.0766 1.00 2403 163 0.1711 0.2502 REMARK 3 14 2.0766 - 2.0259 1.00 2410 127 0.1881 0.2321 REMARK 3 15 2.0259 - 1.9798 1.00 2432 136 0.1987 0.1962 REMARK 3 16 1.9798 - 1.9377 1.00 2355 158 0.2072 0.2666 REMARK 3 17 1.9377 - 1.9000 0.98 2369 147 0.2337 0.2747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4067 REMARK 3 ANGLE : 1.016 5550 REMARK 3 CHIRALITY : 0.065 577 REMARK 3 PLANARITY : 0.006 737 REMARK 3 DIHEDRAL : 3.208 3282 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.2691 15.8449 21.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.0208 T22: 0.0143 REMARK 3 T33: 0.0197 T12: -0.0042 REMARK 3 T13: 0.0129 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.4875 L22: 0.4240 REMARK 3 L33: 0.5565 L12: 0.0198 REMARK 3 L13: 0.0463 L23: 0.0103 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0034 S13: 0.0202 REMARK 3 S21: -0.0037 S22: 0.0012 S23: -0.0163 REMARK 3 S31: -0.0429 S32: 0.0294 S33: -0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 72.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 31.60 REMARK 200 R MERGE (I) : 0.28700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PIG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BUFFER MMT PH 9.0; 25% (M/V) PEG REMARK 280 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.57450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.57450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.57450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.57450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.57450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.57450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.57450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.57450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 760 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 855 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 999 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1121 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1273 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1284 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ASP A 151 OD1 OD2 REMARK 470 LYS A 172 NZ REMARK 470 LYS A 176 NZ REMARK 470 GLU A 187 CD OE1 OE2 REMARK 470 LYS A 214 CD CE NZ REMARK 470 LYS A 358 NZ REMARK 470 LYS A 366 CD CE NZ REMARK 470 ARG A 464 CD NE CZ NH1 NH2 REMARK 470 LYS A 477 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1067 O HOH A 1074 2.18 REMARK 500 O HOH A 870 O HOH A 1160 2.19 REMARK 500 O HOH A 610 O HOH A 1073 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -147.96 -143.00 REMARK 500 ASP A 47 122.59 -21.94 REMARK 500 PRO A 69 46.40 -88.55 REMARK 500 ASP A 83 12.68 -144.29 REMARK 500 VAL A 85 -50.84 -131.81 REMARK 500 ASP A 127 -169.22 -77.44 REMARK 500 SER A 162 -164.96 -76.93 REMARK 500 PHE A 165 94.67 -168.28 REMARK 500 ASP A 167 56.88 74.01 REMARK 500 ASP A 200 -4.81 -140.17 REMARK 500 MET A 217 68.24 -105.42 REMARK 500 ASP A 285 -3.00 -148.28 REMARK 500 ASN A 321 -179.98 76.52 REMARK 500 LYS A 363 98.00 -165.62 REMARK 500 ALA A 401 -125.97 -106.49 REMARK 500 ASN A 418 61.22 38.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1286 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1287 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1289 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1290 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1291 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1292 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A1293 DISTANCE = 7.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 298 OD1 REMARK 620 2 HOH A 610 O 58.4 REMARK 620 3 HOH A 616 O 87.5 47.4 REMARK 620 4 HOH A 659 O 170.9 116.0 83.6 REMARK 620 5 HOH A 821 O 89.4 53.0 85.4 92.1 REMARK 620 6 HOH A1088 O 94.6 150.0 126.2 88.9 148.2 REMARK 620 7 HOH A1096 O 99.3 124.3 163.2 89.8 79.4 68.8 REMARK 620 8 HOH A1128 O 90.0 96.1 57.4 83.4 142.8 68.9 137.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 417 O REMARK 620 2 GLY A 422 O 110.6 REMARK 620 3 HOH A 973 O 87.8 141.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 506 DBREF 6NU7 A 1 489 UNP D1YK18 D1YK18_LACGS 1 489 SEQRES 1 A 489 MET GLU TRP THR ARG GLU GLN ARG TYR ARG LYS TYR LYS SEQRES 2 A 489 ASP TRP ASP ALA GLN THR LEU LEU ASP LEU GLN ALA GLN SEQRES 3 A 489 ALA ALA THR SER PRO TYR GLN MET HIS TYR HIS ILE HIS SEQRES 4 A 489 PRO LEU SER GLY LEU LEU ASN ASP PRO ASN GLY PHE SER SEQRES 5 A 489 TYR TYR ASN GLY GLU TYR HIS LEU PHE CYS GLN SER TYR SEQRES 6 A 489 PRO PHE GLY PRO VAL HIS GLY VAL LYS SER TRP ILE HIS SEQRES 7 A 489 PHE ALA SER PRO ASP LEU VAL HIS TRP HIS TYR LEU GLY SEQRES 8 A 489 PRO ALA ILE ASP PRO ASP SER ASP LEU ASP ASN ALA GLY SEQRES 9 A 489 ALA TYR SER GLY SER ALA MET GLU HIS ASN GLY LYS LEU SEQRES 10 A 489 LEU LEU MET TYR THR GLY ASN HIS ARG ASP GLU ASP TRP SEQRES 11 A 489 THR ARG ILE PRO TYR GLN VAL ILE ALA GLU MET ASP GLU SEQRES 12 A 489 ASN ASN HIS ILE THR LYS PRO ASP ALA ALA ALA ILE LEU SEQRES 13 A 489 PRO PRO GLU HIS VAL SER GLU HIS PHE ARG ASP PRO GLN SEQRES 14 A 489 LEU PHE LYS HIS ASP GLY LYS TYR TYR VAL LEU LEU GLY SEQRES 15 A 489 ALA GLN ASP ALA GLU THR LYS SER GLY HIS ILE ASP ILE SEQRES 16 A 489 TYR GLU SER ASP ASP LEU LYS THR TRP HIS GLU ASN GLY SEQRES 17 A 489 TYR LEU ASP LEU GLY LYS ASP GLU MET GLY TYR MET ILE SEQRES 18 A 489 GLU CYS PRO ASN LEU VAL PHE VAL ASN ASN TYR PRO VAL SEQRES 19 A 489 LEU ILE PHE CYS PRO GLN GLY LEU ASP LYS ALA ILE SER SEQRES 20 A 489 ASP TYR GLN ASN ILE TYR PRO ASN MET TYR TRP ILE GLY SEQRES 21 A 489 LYS ASP ILE ASN LEU ASN GLU ALA LYS PHE THR PRO LEU SEQRES 22 A 489 GLN SER HIS PRO ALA ASN LEU ASP ASP GLY PHE ASP VAL SEQRES 23 A 489 TYR ALA THR GLN ALA PHE ASN ALA PRO ASP GLY ASN ALA SEQRES 24 A 489 TYR ALA ILE SER TRP VAL GLY LEU PRO ASP CYS THR TYR SEQRES 25 A 489 PRO THR ASP LYS GLU ASN TRP ALA ASN CYS TYR SER GLN SEQRES 26 A 489 VAL LYS ARG LEU GLU ILE LYS ASP GLY ALA LEU TYR GLN SEQRES 27 A 489 HIS PRO VAL ASP ALA ILE LYS ASN LEU ARG HIS ASN GLU SEQRES 28 A 489 THR GLN LEU ASN ASP GLU LYS ILE ILE SER GLN LYS ALA SEQRES 29 A 489 GLY LYS GLN TYR GLU LEU LYS LEU TYR LEU ALA ALA GLY SEQRES 30 A 489 GLN ALA GLY LYS LEU HIS LEU ALA SER ASN ASP ASP LEU SEQRES 31 A 489 SER ALA SER LEU VAL ILE ASP PHE ASN THR ALA GLN ASP SEQRES 32 A 489 ALA LYS LEU THR ILE ASP ARG ALA SER SER GLY PRO ALA SEQRES 33 A 489 VAL ASN PRO ASP TYR GLY ALA THR ARG THR ILE GLY LEU SEQRES 34 A 489 ASN ASP ASN GLU ASP LEU ASP LEU ASP ILE PHE VAL ASP SEQRES 35 A 489 GLY SER LEU CYS GLU ILE PHE ILE ASN ASP GLY ARG HIS SEQRES 36 A 489 VAL ALA THR LEU ARG PHE PHE ALA ARG SER SER ASN GLN SEQRES 37 A 489 LYS ILE ALA PHE ASP LYS ASP THR LYS TYR THR GLY ARG SEQRES 38 A 489 LEU TRP SER MET ASN SER ILE LEU HET EDO A 501 4 HET TRS A 502 8 HET EDO A 503 4 HET EDO A 504 4 HET NA A 505 1 HET NA A 506 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 2 EDO 3(C2 H6 O2) FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 6 NA 2(NA 1+) FORMUL 8 HOH *693(H2 O) HELIX 1 AA1 THR A 4 ARG A 10 1 7 HELIX 2 AA2 LYS A 11 TRP A 15 5 5 HELIX 3 AA3 ASP A 16 THR A 29 1 14 HELIX 4 AA4 TYR A 312 GLU A 317 5 6 HELIX 5 AA5 ASP A 342 ASN A 346 5 5 HELIX 6 AA6 ASN A 418 GLY A 422 5 5 SHEET 1 AA1 5 HIS A 88 ILE A 94 0 SHEET 2 AA1 5 SER A 75 SER A 81 -1 N HIS A 78 O LEU A 90 SHEET 3 AA1 5 GLU A 57 TYR A 65 -1 N LEU A 60 O PHE A 79 SHEET 4 AA1 5 GLY A 43 TYR A 54 -1 N ASN A 49 O PHE A 61 SHEET 5 AA1 5 TRP A 319 ALA A 320 1 O ALA A 320 N GLY A 43 SHEET 1 AA2 4 ALA A 105 HIS A 113 0 SHEET 2 AA2 4 LYS A 116 ARG A 126 -1 O LYS A 116 N HIS A 113 SHEET 3 AA2 4 ARG A 132 MET A 141 -1 O TYR A 135 N GLY A 123 SHEET 4 AA2 4 ILE A 147 THR A 148 -1 O THR A 148 N GLU A 140 SHEET 1 AA3 4 VAL A 161 HIS A 173 0 SHEET 2 AA3 4 LYS A 176 ASP A 185 -1 O LYS A 176 N HIS A 173 SHEET 3 AA3 4 GLY A 191 SER A 198 -1 O SER A 198 N TYR A 177 SHEET 4 AA3 4 HIS A 205 TYR A 209 -1 O ASN A 207 N ILE A 195 SHEET 1 AA4 4 MET A 220 VAL A 229 0 SHEET 2 AA4 4 TYR A 232 GLN A 240 -1 O VAL A 234 N VAL A 227 SHEET 3 AA4 4 MET A 256 ASN A 264 -1 O GLY A 260 N PRO A 233 SHEET 4 AA4 4 LYS A 269 PRO A 272 -1 O THR A 271 N LYS A 261 SHEET 1 AA5 4 MET A 220 VAL A 229 0 SHEET 2 AA5 4 TYR A 232 GLN A 240 -1 O VAL A 234 N VAL A 227 SHEET 3 AA5 4 MET A 256 ASN A 264 -1 O GLY A 260 N PRO A 233 SHEET 4 AA5 4 ALA A 278 ASN A 279 -1 O ALA A 278 N TYR A 257 SHEET 1 AA6 3 VAL A 286 ASN A 293 0 SHEET 2 AA6 3 ALA A 299 VAL A 305 -1 O TRP A 304 N TYR A 287 SHEET 3 AA6 3 CYS A 322 TYR A 323 -1 O CYS A 322 N VAL A 305 SHEET 1 AA7 4 VAL A 286 ASN A 293 0 SHEET 2 AA7 4 ALA A 299 VAL A 305 -1 O TRP A 304 N TYR A 287 SHEET 3 AA7 4 LYS A 327 LYS A 332 -1 O LYS A 327 N ALA A 301 SHEET 4 AA7 4 ALA A 335 PRO A 340 -1 O TYR A 337 N GLU A 330 SHEET 1 AA8 6 ARG A 348 ASN A 355 0 SHEET 2 AA8 6 TYR A 478 MET A 485 -1 O GLY A 480 N LEU A 354 SHEET 3 AA8 6 GLN A 367 LEU A 374 -1 N TYR A 373 O THR A 479 SHEET 4 AA8 6 LEU A 435 ASP A 442 -1 O LEU A 435 N LEU A 374 SHEET 5 AA8 6 LEU A 445 ILE A 450 -1 O PHE A 449 N ASP A 438 SHEET 6 AA8 6 HIS A 455 ARG A 460 -1 O HIS A 455 N ILE A 450 SHEET 1 AA9 6 ILE A 359 SER A 361 0 SHEET 2 AA9 6 LYS A 469 PHE A 472 -1 O ILE A 470 N SER A 361 SHEET 3 AA9 6 ALA A 379 SER A 386 -1 N HIS A 383 O ALA A 471 SHEET 4 AA9 6 LEU A 394 ASN A 399 -1 O LEU A 394 N LEU A 384 SHEET 5 AA9 6 LYS A 405 ASP A 409 -1 O THR A 407 N ASP A 397 SHEET 6 AA9 6 THR A 424 GLY A 428 -1 O ARG A 425 N ILE A 408 LINK OD1 ASN A 298 NA NA A 505 1555 1555 2.35 LINK O VAL A 417 NA NA A 506 1555 1555 2.74 LINK O GLY A 422 NA NA A 506 1555 1555 2.91 LINK NA NA A 505 O HOH A 610 1555 1555 3.16 LINK NA NA A 505 O HOH A 616 1555 7555 2.36 LINK NA NA A 505 O HOH A 659 1555 7555 2.36 LINK NA NA A 505 O HOH A 821 1555 1555 2.51 LINK NA NA A 505 O HOH A1088 1555 1555 2.67 LINK NA NA A 505 O HOH A1096 1555 1555 2.66 LINK NA NA A 505 O HOH A1128 1555 7555 2.39 LINK NA NA A 506 O HOH A 973 1555 1555 2.66 SITE 1 AC1 6 GLN A 169 PHE A 171 LEU A 226 PHE A 228 SITE 2 AC1 6 ASN A 293 HOH A 650 SITE 1 AC2 10 ASP A 47 TYR A 106 SER A 107 ARG A 166 SITE 2 AC2 10 ASP A 167 GLU A 222 HOH A 683 HOH A 708 SITE 3 AC2 10 HOH A 777 HOH A1011 SITE 1 AC3 7 ARG A 5 GLU A 6 ASN A 102 TRP A 130 SITE 2 AC3 7 HOH A 898 HOH A 916 HOH A 972 SITE 1 AC4 6 HIS A 86 ASN A 346 LEU A 347 ASN A 486 SITE 2 AC4 6 ILE A 488 HOH A 855 SITE 1 AC5 7 ASN A 298 HOH A 616 HOH A 659 HOH A 821 SITE 2 AC5 7 HOH A1088 HOH A1096 HOH A1128 SITE 1 AC6 5 ARG A 410 VAL A 417 GLY A 422 ALA A 423 SITE 2 AC6 5 HOH A 973 CRYST1 103.149 103.149 101.978 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009695 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009806 0.00000