HEADER SIGNALING PROTEIN 06-FEB-19 6NWE TITLE CRYSTAL STRUCTURE OF BOVINE OPSIN WITH BETA OCTYL GLUCOSIDE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ILENLKDVGLF PEPTIDE CT2; COMPND 6 CHAIN: B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: BOVINE; SOURCE 9 ORGANISM_TAXID: 9913 KEYWDS OLFACTORY RECEPTOR, ODORANT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.T.EGER,T.MORIZUMI,O.P.ERNST REVDAT 4 13-NOV-24 6NWE 1 REMARK REVDAT 3 11-OCT-23 6NWE 1 REMARK HETSYN LINK REVDAT 2 29-JUL-20 6NWE 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 12-FEB-20 6NWE 0 JRNL AUTH T.MORIZUMI,K.KUROI,B.T.EGER,W.L.OU,N.VAN EPS,H.TSUKAMOTO, JRNL AUTH 2 Y.FURUTANI,O.P.ERNST JRNL TITL ODORANT-BINDING SITE IN VISUAL OPSIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 33684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1047 - 6.1863 0.98 2726 130 0.2066 0.2303 REMARK 3 2 6.1863 - 4.9131 0.99 2689 133 0.2029 0.2286 REMARK 3 3 4.9131 - 4.2928 0.99 2648 140 0.1762 0.1891 REMARK 3 4 4.2928 - 3.9007 0.99 2630 162 0.1795 0.2108 REMARK 3 5 3.9007 - 3.6213 0.99 2640 152 0.1896 0.2018 REMARK 3 6 3.6213 - 3.4079 1.00 2673 144 0.1888 0.2109 REMARK 3 7 3.4079 - 3.2373 1.00 2684 119 0.1996 0.2479 REMARK 3 8 3.2373 - 3.0965 1.00 2647 139 0.1986 0.2338 REMARK 3 9 3.0965 - 2.9773 1.00 2678 147 0.1993 0.2315 REMARK 3 10 2.9773 - 2.8746 1.00 2663 130 0.2048 0.2761 REMARK 3 11 2.8746 - 2.7847 1.00 2662 133 0.2294 0.3036 REMARK 3 12 2.7847 - 2.7051 1.00 2674 141 0.2632 0.3515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2965 REMARK 3 ANGLE : 0.842 4028 REMARK 3 CHIRALITY : 0.046 465 REMARK 3 PLANARITY : 0.005 474 REMARK 3 DIHEDRAL : 15.166 1779 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:139) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0644 41.6094 40.4035 REMARK 3 T TENSOR REMARK 3 T11: 0.4125 T22: 0.3426 REMARK 3 T33: 0.5064 T12: -0.0019 REMARK 3 T13: -0.0613 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 1.2550 L22: 0.6211 REMARK 3 L33: 0.9188 L12: 0.0412 REMARK 3 L13: -0.2985 L23: -0.4841 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.2582 S13: 0.1567 REMARK 3 S21: -0.3896 S22: 0.0839 S23: -0.3075 REMARK 3 S31: -0.1602 S32: 0.0629 S33: 0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 140:168) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2604 25.7618 25.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.7990 T22: 0.4008 REMARK 3 T33: 0.4509 T12: -0.1584 REMARK 3 T13: -0.1220 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.1831 L22: 0.4188 REMARK 3 L33: 0.1966 L12: 0.1850 REMARK 3 L13: -0.6290 L23: 0.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.3460 S12: 0.6338 S13: -0.4905 REMARK 3 S21: -0.7106 S22: 0.1460 S23: 0.1634 REMARK 3 S31: 0.4193 S32: -0.2127 S33: -0.1581 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 169:222) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6238 49.2259 30.7158 REMARK 3 T TENSOR REMARK 3 T11: 0.5414 T22: 0.3576 REMARK 3 T33: 0.4272 T12: -0.0711 REMARK 3 T13: -0.1743 T23: 0.1811 REMARK 3 L TENSOR REMARK 3 L11: 0.5901 L22: 0.7170 REMARK 3 L33: 1.3625 L12: -0.5085 REMARK 3 L13: -0.2789 L23: 0.8204 REMARK 3 S TENSOR REMARK 3 S11: -0.1805 S12: 0.0464 S13: 0.4267 REMARK 3 S21: -0.1994 S22: 0.2210 S23: -0.3101 REMARK 3 S31: -0.7705 S32: 0.2873 S33: 0.3878 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 223:287) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0019 35.1037 42.0831 REMARK 3 T TENSOR REMARK 3 T11: 0.4959 T22: 0.4915 REMARK 3 T33: 0.6059 T12: -0.0407 REMARK 3 T13: -0.1163 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.3017 L22: 0.4692 REMARK 3 L33: 1.0843 L12: -0.7318 REMARK 3 L13: 0.0062 L23: 0.2543 REMARK 3 S TENSOR REMARK 3 S11: -0.1366 S12: 0.1862 S13: 0.3033 REMARK 3 S21: -0.2297 S22: 0.1524 S23: 0.5856 REMARK 3 S31: -0.0820 S32: -0.3009 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 288:326) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1779 27.5288 47.1422 REMARK 3 T TENSOR REMARK 3 T11: 0.5215 T22: 0.4195 REMARK 3 T33: 0.5447 T12: -0.0050 REMARK 3 T13: -0.0867 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.4060 L22: 0.0516 REMARK 3 L33: 0.4734 L12: 0.0588 REMARK 3 L13: 0.4401 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.1731 S12: 0.0551 S13: 0.0729 REMARK 3 S21: -0.4244 S22: 0.2769 S23: 0.2277 REMARK 3 S31: -0.1816 S32: -0.2504 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 340:344) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8638 13.7496 37.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.9496 T22: 0.8300 REMARK 3 T33: 1.3127 T12: -0.0913 REMARK 3 T13: -0.0922 T23: 0.1068 REMARK 3 L TENSOR REMARK 3 L11: 0.0198 L22: 0.0217 REMARK 3 L33: 0.0255 L12: -0.0098 REMARK 3 L13: -0.0003 L23: -0.0066 REMARK 3 S TENSOR REMARK 3 S11: -0.1967 S12: 0.1731 S13: -0.2839 REMARK 3 S21: -0.4233 S22: -0.0918 S23: -0.1417 REMARK 3 S31: 0.1134 S32: 0.1395 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 345:350) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8762 16.7574 40.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.7512 T22: 0.7559 REMARK 3 T33: 1.0252 T12: -0.1502 REMARK 3 T13: -0.0783 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 0.0128 L22: 0.0311 REMARK 3 L33: 0.0159 L12: -0.0099 REMARK 3 L13: 0.0122 L23: -0.0205 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.1354 S13: -0.3344 REMARK 3 S21: -0.0629 S22: 0.2237 S23: 0.1382 REMARK 3 S31: 0.3541 S32: 0.0387 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4J4Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.1-3.3M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE BUFFER, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 121.08450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.90817 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.90533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 121.08450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.90817 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.90533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 121.08450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.90817 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.90533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 121.08450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 69.90817 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.90533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 121.08450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 69.90817 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.90533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 121.08450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 69.90817 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.90533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 139.81634 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.81067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 139.81634 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.81067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 139.81634 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 73.81067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 139.81634 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.81067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 139.81634 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 73.81067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 139.81634 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 73.81067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 327 REMARK 465 LEU A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 ASP A 331 REMARK 465 GLU A 332 REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 THR A 335 REMARK 465 THR A 336 REMARK 465 VAL A 337 REMARK 465 SER A 338 REMARK 465 LYS A 339 REMARK 465 THR A 340 REMARK 465 GLU A 341 REMARK 465 THR A 342 REMARK 465 SER A 343 REMARK 465 GLN A 344 REMARK 465 VAL A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 ALA A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 118 O2 BOG A 412 1.27 REMARK 500 ND2 ASN A 15 O5 NAG C 1 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 4.33 -68.36 REMARK 500 ARG A 69 57.72 -91.67 REMARK 500 SER A 176 -161.87 60.55 REMARK 500 PHE A 212 -56.56 -126.80 REMARK 500 GLN A 237 48.53 -151.59 REMARK 500 HIS A 278 58.74 -113.36 REMARK 500 ILE A 307 -60.93 -120.64 REMARK 500 CYS A 323 -21.47 68.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NWE A 1 348 UNP P02699 OPSD_BOVIN 1 348 DBREF 6NWE B 340 350 PDB 6NWE 6NWE 340 350 SEQRES 1 A 348 MET ASN GLY THR GLU GLY PRO ASN PHE TYR VAL PRO PHE SEQRES 2 A 348 SER ASN LYS THR GLY VAL VAL ARG SER PRO PHE GLU ALA SEQRES 3 A 348 PRO GLN TYR TYR LEU ALA GLU PRO TRP GLN PHE SER MET SEQRES 4 A 348 LEU ALA ALA TYR MET PHE LEU LEU ILE MET LEU GLY PHE SEQRES 5 A 348 PRO ILE ASN PHE LEU THR LEU TYR VAL THR VAL GLN HIS SEQRES 6 A 348 LYS LYS LEU ARG THR PRO LEU ASN TYR ILE LEU LEU ASN SEQRES 7 A 348 LEU ALA VAL ALA ASP LEU PHE MET VAL PHE GLY GLY PHE SEQRES 8 A 348 THR THR THR LEU TYR THR SER LEU HIS GLY TYR PHE VAL SEQRES 9 A 348 PHE GLY PRO THR GLY CYS ASN LEU GLU GLY PHE PHE ALA SEQRES 10 A 348 THR LEU GLY GLY GLU ILE ALA LEU TRP SER LEU VAL VAL SEQRES 11 A 348 LEU ALA ILE GLU ARG TYR VAL VAL VAL CYS LYS PRO MET SEQRES 12 A 348 SER ASN PHE ARG PHE GLY GLU ASN HIS ALA ILE MET GLY SEQRES 13 A 348 VAL ALA PHE THR TRP VAL MET ALA LEU ALA CYS ALA ALA SEQRES 14 A 348 PRO PRO LEU VAL GLY TRP SER ARG TYR ILE PRO GLU GLY SEQRES 15 A 348 MET GLN CYS SER CYS GLY ILE ASP TYR TYR THR PRO HIS SEQRES 16 A 348 GLU GLU THR ASN ASN GLU SER PHE VAL ILE TYR MET PHE SEQRES 17 A 348 VAL VAL HIS PHE ILE ILE PRO LEU ILE VAL ILE PHE PHE SEQRES 18 A 348 CYS TYR GLY GLN LEU VAL PHE THR VAL LYS GLU ALA ALA SEQRES 19 A 348 ALA GLN GLN GLN GLU SER ALA THR THR GLN LYS ALA GLU SEQRES 20 A 348 LYS GLU VAL THR ARG MET VAL ILE ILE MET VAL ILE ALA SEQRES 21 A 348 PHE LEU ILE CYS TRP LEU PRO TYR ALA GLY VAL ALA PHE SEQRES 22 A 348 TYR ILE PHE THR HIS GLN GLY SER ASP PHE GLY PRO ILE SEQRES 23 A 348 PHE MET THR ILE PRO ALA PHE PHE ALA LYS THR SER ALA SEQRES 24 A 348 VAL TYR ASN PRO VAL ILE TYR ILE MET MET ASN LYS GLN SEQRES 25 A 348 PHE ARG ASN CYS MET VAL THR THR LEU CYS CYS GLY LYS SEQRES 26 A 348 ASN PRO LEU GLY ASP ASP GLU ALA SER THR THR VAL SER SEQRES 27 A 348 LYS THR GLU THR SER GLN VAL ALA PRO ALA SEQRES 1 B 11 ILE LEU GLU ASN LEU LYS ASP VAL GLY LEU PHE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BMA C 4 11 HET BOG A 405 20 HET BOG A 406 20 HET BOG A 407 20 HET BOG A 408 20 HET PLM A 409 17 HET SO4 A 410 5 HET SO4 A 411 5 HET BOG A 412 20 HET SO4 B 401 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM PLM PALMITIC ACID HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 BOG 5(C14 H28 O6) FORMUL 8 PLM C16 H32 O2 FORMUL 9 SO4 3(O4 S 2-) FORMUL 13 HOH *9(H2 O) HELIX 1 AA1 GLU A 33 HIS A 65 1 33 HELIX 2 AA2 LYS A 66 ARG A 69 5 4 HELIX 3 AA3 THR A 70 GLY A 90 1 21 HELIX 4 AA4 GLY A 90 HIS A 100 1 11 HELIX 5 AA5 PHE A 105 LYS A 141 1 37 HELIX 6 AA6 GLY A 149 ALA A 169 1 21 HELIX 7 AA7 PRO A 170 VAL A 173 5 4 HELIX 8 AA8 HIS A 195 THR A 198 5 4 HELIX 9 AA9 ASN A 199 PHE A 212 1 14 HELIX 10 AB1 PHE A 212 GLN A 236 1 25 HELIX 11 AB2 SER A 240 HIS A 278 1 39 HELIX 12 AB3 GLY A 284 THR A 297 1 14 HELIX 13 AB4 THR A 297 ILE A 307 1 11 HELIX 14 AB5 ASN A 310 CYS A 322 1 13 HELIX 15 AB6 LEU B 341 VAL B 347 1 7 SHEET 1 AA1 2 THR A 4 GLY A 6 0 SHEET 2 AA1 2 PHE A 9 VAL A 11 -1 O VAL A 11 N THR A 4 SHEET 1 AA2 2 TYR A 178 GLU A 181 0 SHEET 2 AA2 2 SER A 186 ILE A 189 -1 O SER A 186 N GLU A 181 SSBOND 1 CYS A 110 CYS A 187 1555 1555 2.06 LINK ND2 ASN A 15 C1 NAG C 1 1555 1555 1.43 LINK SG CYS A 323 C1 PLM A 409 1555 1555 1.62 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O3 BMA C 3 C1 BMA C 4 1555 1555 1.43 CRYST1 242.169 242.169 110.716 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004129 0.002384 0.000000 0.00000 SCALE2 0.000000 0.004768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009032 0.00000