HEADER RNA BINDING PROTEIN/RNA/DNA 10-FEB-19 6NY3 TITLE CASX TERNARY COMPLEX WITH 30BP TARGET DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TARGET STRAND; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA NON-TARGET STRAND; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CASX; COMPND 11 CHAIN: Y; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: GRNA; COMPND 16 CHAIN: B; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA BACTERIUM; SOURCE 4 ORGANISM_TAXID: 2026735; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA BACTERIUM; SOURCE 8 ORGANISM_TAXID: 2026735; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA BACTERIUM; SOURCE 11 ORGANISM_TAXID: 2026735; SOURCE 12 GENE: DD725_10130; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA BACTERIUM; SOURCE 18 ORGANISM_TAXID: 2026735 KEYWDS CASX, SGRNA, TARGET DNA, CRISPR, RNA BINDING PROTEIN-RNA-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.LIU,N.ORLOVA,E.NOGALES,J.A.DOUDNA REVDAT 3 25-DEC-19 6NY3 1 REMARK REVDAT 2 18-DEC-19 6NY3 1 CRYST1 SCALE REVDAT 1 27-FEB-19 6NY3 0 SPRSDE 27-FEB-19 6NY3 6E5O JRNL AUTH J.J.LIU,N.ORLOVA,B.L.OAKES,E.MA,H.B.SPINNER,K.L.M.BANEY, JRNL AUTH 2 J.CHUCK,D.TAN,G.J.KNOTT,L.B.HARRINGTON,B.AL-SHAYEB,A.WAGNER, JRNL AUTH 3 J.BROTZMANN,B.T.STAAHL,K.L.TAYLOR,J.DESMARAIS,E.NOGALES, JRNL AUTH 4 J.A.DOUDNA JRNL TITL CASX ENZYMES COMPRISE A DISTINCT FAMILY OF RNA-GUIDED GENOME JRNL TITL 2 EDITORS. JRNL REF NATURE V. 566 218 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30718774 JRNL DOI 10.1038/S41586-019-0908-X REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 258036 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6NY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239648. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CASX TERNARY COMPLEX WITH 30BP REMARK 245 TARGET DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 46.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, Y, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC D 25 REMARK 465 DG D 26 REMARK 465 DA D 27 REMARK 465 DC D 28 REMARK 465 DC D 29 REMARK 465 DC D 30 REMARK 465 MET Y 1 REMARK 465 UNK Y 120 REMARK 465 UNK Y 121 REMARK 465 UNK Y 122 REMARK 465 UNK Y 144 REMARK 465 UNK Y 145 REMARK 465 UNK Y 146 REMARK 465 UNK Y 158 REMARK 465 UNK Y 159 REMARK 465 UNK Y 160 REMARK 465 UNK Y 161 REMARK 465 UNK Y 162 REMARK 465 UNK Y 163 REMARK 465 UNK Y 164 REMARK 465 UNK Y 165 REMARK 465 UNK Y 166 REMARK 465 UNK Y 167 REMARK 465 UNK Y 168 REMARK 465 UNK Y 169 REMARK 465 UNK Y 170 REMARK 465 UNK Y 171 REMARK 465 UNK Y 172 REMARK 465 UNK Y 173 REMARK 465 UNK Y 174 REMARK 465 UNK Y 175 REMARK 465 UNK Y 176 REMARK 465 GLU Y 393 REMARK 465 GLY Y 394 REMARK 465 SER Y 395 REMARK 465 LEU Y 396 REMARK 465 ALA Y 419 REMARK 465 GLY Y 420 REMARK 465 ASP Y 421 REMARK 465 LEU Y 691 REMARK 465 PRO Y 692 REMARK 465 GLU Y 693 REMARK 465 PHE Y 694 REMARK 465 LYS Y 695 REMARK 465 ASP Y 696 REMARK 465 SER Y 697 REMARK 465 SER Y 698 REMARK 465 GLY Y 699 REMARK 465 GLY Y 700 REMARK 465 PRO Y 701 REMARK 465 THR Y 702 REMARK 465 ASP Y 703 REMARK 465 ILE Y 704 REMARK 465 PHE Y 828 REMARK 465 UNK Y 838 REMARK 465 UNK Y 839 REMARK 465 UNK Y 840 REMARK 465 UNK Y 841 REMARK 465 UNK Y 844 REMARK 465 UNK Y 845 REMARK 465 UNK Y 846 REMARK 465 UNK Y 847 REMARK 465 UNK Y 848 REMARK 465 UNK Y 849 REMARK 465 UNK Y 850 REMARK 465 UNK Y 851 REMARK 465 UNK Y 852 REMARK 465 UNK Y 853 REMARK 465 UNK Y 854 REMARK 465 UNK Y 855 REMARK 465 UNK Y 856 REMARK 465 UNK Y 857 REMARK 465 UNK Y 858 REMARK 465 UNK Y 859 REMARK 465 PRO Y 984 REMARK 465 ASN Y 985 REMARK 465 ALA Y 986 REMARK 465 U B 11 REMARK 465 U B 12 REMARK 465 C B 13 REMARK 465 C B 14 REMARK 465 A B 15 REMARK 465 A B 73 REMARK 465 G B 74 REMARK 465 A B 75 REMARK 465 G B 76 REMARK 465 A B 77 REMARK 465 A B 78 REMARK 465 A B 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN Y 272 CG OD1 ND2 REMARK 470 TYR Y 275 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER Y 277 OG REMARK 470 VAL Y 278 CG1 CG2 REMARK 470 ASP Y 317 CG OD1 OD2 REMARK 470 ASP Y 318 CG OD1 OD2 REMARK 470 LYS Y 320 CG CD CE NZ REMARK 470 GLU Y 340 CG CD OE1 OE2 REMARK 470 ARG Y 373 CG CD NE CZ NH1 NH2 REMARK 470 HIS Y 389 CG ND1 CD2 CE1 NE2 REMARK 470 LYS Y 390 CG CD CE NZ REMARK 470 LYS Y 391 CG CD CE NZ REMARK 470 ARG Y 392 CG CD NE CZ NH1 NH2 REMARK 470 GLU Y 397 CG CD OE1 OE2 REMARK 470 LYS Y 424 CG CD CE NZ REMARK 470 ASP Y 427 CG OD1 OD2 REMARK 470 GLU Y 428 CB CG CD OE1 OE2 REMARK 470 GLU Y 453 CG CD OE1 OE2 REMARK 470 ASP Y 454 CG OD1 OD2 REMARK 470 SER Y 470 OG REMARK 470 LYS Y 477 CG CD CE NZ REMARK 470 GLU Y 478 CG CD OE1 OE2 REMARK 470 MET Y 479 CG SD CE REMARK 470 GLU Y 506 CG CD OE1 OE2 REMARK 470 GLU Y 508 CG CD OE1 OE2 REMARK 470 ASP Y 522 CG OD1 OD2 REMARK 470 LYS Y 535 CG CD CE NZ REMARK 470 GLU Y 538 CG CD OE1 OE2 REMARK 470 GLU Y 543 CG CD OE1 OE2 REMARK 470 THR Y 562 OG1 CG2 REMARK 470 ASP Y 563 CG OD1 OD2 REMARK 470 ILE Y 564 CG1 CG2 CD1 REMARK 470 LYS Y 566 CG CD CE NZ REMARK 470 LYS Y 569 CG CD CE NZ REMARK 470 LYS Y 579 CG CD CE NZ REMARK 470 ASP Y 584 CG OD1 OD2 REMARK 470 ASP Y 588 CG OD1 OD2 REMARK 470 GLU Y 592 CG CD OE1 OE2 REMARK 470 GLN Y 593 CG CD OE1 NE2 REMARK 470 GLU Y 608 CG CD OE1 OE2 REMARK 470 ASN Y 612 CG OD1 ND2 REMARK 470 ASP Y 613 CG OD1 OD2 REMARK 470 GLU Y 618 CG CD OE1 OE2 REMARK 470 GLU Y 631 CG CD OE1 OE2 REMARK 470 ARG Y 641 CG CD NE CZ NH1 NH2 REMARK 470 ASP Y 642 CG OD1 OD2 REMARK 470 GLU Y 643 CG CD OE1 OE2 REMARK 470 GLU Y 653 CG CD OE1 OE2 REMARK 470 GLU Y 656 CG CD OE1 OE2 REMARK 470 ASP Y 659 CG OD1 OD2 REMARK 470 LYS Y 664 CG CD CE NZ REMARK 470 ASN Y 667 CG OD1 ND2 REMARK 470 GLU Y 675 CG CD OE1 OE2 REMARK 470 ASN Y 676 CG OD1 ND2 REMARK 470 ASP Y 685 CG OD1 OD2 REMARK 470 GLU Y 687 CG CD OE1 OE2 REMARK 470 GLU Y 709 CG CD OE1 OE2 REMARK 470 GLU Y 713 CG CD OE1 OE2 REMARK 470 GLU Y 723 CG CD OE1 OE2 REMARK 470 GLU Y 725 CG CD OE1 OE2 REMARK 470 ASP Y 745 CG OD1 OD2 REMARK 470 ASP Y 746 CG OD1 OD2 REMARK 470 ASP Y 754 CG OD1 OD2 REMARK 470 GLU Y 803 CG CD OE1 OE2 REMARK 470 LYS Y 808 CG CD CE NZ REMARK 470 GLU Y 921 CG CD OE1 OE2 REMARK 470 ASP Y 927 CG OD1 OD2 REMARK 470 GLU Y 936 CG CD OE1 OE2 REMARK 470 SER Y 951 OG REMARK 470 LEU Y 978 CG CD1 CD2 REMARK 470 GLU Y 980 CG CD OE1 OE2 REMARK 470 VAL Y 981 CG1 CG2 REMARK 470 LYS Y 983 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 12 O3' DG C 12 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP Y 534 CA - CB - CG ANGL. DEV. = 12.3 DEGREES REMARK 500 GLY Y 572 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 U B 9 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 U B 17 N1 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 U B 17 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 C B 108 C6 - N1 - C2 ANGL. DEV. = -2.6 DEGREES REMARK 500 C B 108 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 C B 111 C6 - N1 - C2 ANGL. DEV. = -3.2 DEGREES REMARK 500 C B 111 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 C B 111 C2 - N1 - C1' ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR Y 36 -74.76 -71.66 REMARK 500 ASP Y 37 -39.33 -141.68 REMARK 500 GLU Y 44 45.22 -92.48 REMARK 500 PRO Y 54 -72.49 -65.43 REMARK 500 GLN Y 55 175.65 176.40 REMARK 500 ASN Y 59 -8.40 72.18 REMARK 500 PHE Y 98 45.40 -86.43 REMARK 500 ALA Y 99 -76.67 -84.09 REMARK 500 GLN Y 100 167.76 175.77 REMARK 500 SER Y 103 -132.61 172.04 REMARK 500 UNK Y 105 -132.79 -82.84 REMARK 500 UNK Y 106 -124.14 -158.41 REMARK 500 UNK Y 109 -143.64 -79.74 REMARK 500 UNK Y 111 39.08 -159.98 REMARK 500 UNK Y 116 -92.39 -113.07 REMARK 500 UNK Y 117 -103.82 -160.34 REMARK 500 UNK Y 118 -106.32 -155.81 REMARK 500 UNK Y 124 78.87 -152.85 REMARK 500 UNK Y 125 95.73 -63.23 REMARK 500 UNK Y 130 -70.06 -70.48 REMARK 500 UNK Y 134 -56.62 -154.39 REMARK 500 UNK Y 136 -143.45 -112.95 REMARK 500 UNK Y 140 75.80 53.81 REMARK 500 UNK Y 142 -159.88 -156.64 REMARK 500 UNK Y 150 70.41 -66.11 REMARK 500 UNK Y 153 -145.67 -156.70 REMARK 500 UNK Y 154 127.39 65.25 REMARK 500 UNK Y 156 -96.71 55.62 REMARK 500 UNK Y 157 -79.02 53.32 REMARK 500 UNK Y 185 -168.11 -75.52 REMARK 500 ARG Y 191 35.47 -96.31 REMARK 500 ASP Y 194 70.49 53.96 REMARK 500 TYR Y 196 48.30 -92.20 REMARK 500 SER Y 197 -6.30 -140.04 REMARK 500 ILE Y 198 -161.96 -115.25 REMARK 500 HIS Y 199 -46.91 -21.34 REMARK 500 GLU Y 203 -159.34 -92.17 REMARK 500 SER Y 204 79.11 63.46 REMARK 500 THR Y 205 11.74 -65.84 REMARK 500 LEU Y 261 35.70 -99.20 REMARK 500 TYR Y 275 148.79 -175.03 REMARK 500 HIS Y 285 -18.83 70.90 REMARK 500 THR Y 286 -89.79 -104.42 REMARK 500 LYS Y 287 -32.19 -154.99 REMARK 500 GLN Y 310 -51.59 -120.20 REMARK 500 ASP Y 317 48.03 -92.86 REMARK 500 ASP Y 318 -37.44 -133.24 REMARK 500 GLU Y 335 42.93 -107.70 REMARK 500 ASN Y 381 67.10 60.38 REMARK 500 ASP Y 388 -2.44 -140.25 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE Y 198 HIS Y 199 -138.16 REMARK 500 GLY Y 367 VAL Y 368 -145.98 REMARK 500 ALA Y 449 ARG Y 450 149.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8980 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-8994 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-8996 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CASX CONSTRUCT HAS THE FOLLOWING SEQUENCE: REMARK 999 SNAMEKRINKIRKKLSADNATKPVSRSGPMKTLLVRVMTDDLKKRLEKRRKKPEVMPQVISNNAANNL DBREF 6NY3 C 1 30 PDB 6NY3 6NY3 1 30 DBREF 6NY3 D 1 30 PDB 6NY3 6NY3 1 30 DBREF1 6NY3 Y 1 103 UNP A0A357BT59_9DELT DBREF2 6NY3 Y A0A357BT59 1 103 DBREF 6NY3 Y 104 185 PDB 6NY3 6NY3 104 185 DBREF1 6NY3 Y 186 828 UNP A0A357BT59_9DELT DBREF2 6NY3 Y A0A357BT59 186 828 DBREF 6NY3 Y 829 912 PDB 6NY3 6NY3 829 912 DBREF1 6NY3 Y 913 986 UNP A0A357BT59_9DELT DBREF2 6NY3 Y A0A357BT59 913 986 DBREF 6NY3 B 1 122 PDB 6NY3 6NY3 1 122 SEQADV 6NY3 ALA Y 672 UNP A0A357BT5 ASP 672 CONFLICT SEQADV 6NY3 ALA Y 769 UNP A0A357BT5 GLU 769 CONFLICT SEQADV 6NY3 ALA Y 935 UNP A0A357BT5 ASP 935 CONFLICT SEQRES 1 C 30 DT DT DT DG DA DT DT DT DT DC DT DG DC SEQRES 2 C 30 DT DG DC DA DG DG DA DT DG DA DA DA DT SEQRES 3 C 30 DC DC DC DG SEQRES 1 D 30 DC DG DG DG DA DT DT DT DC DA DT DC DC SEQRES 2 D 30 DT DG DC DA DG DC DA DT DC DC DC DC DG SEQRES 3 D 30 DA DC DC DC SEQRES 1 Y 986 MET GLU LYS ARG ILE ASN LYS ILE ARG LYS LYS LEU SER SEQRES 2 Y 986 ALA ASP ASN ALA THR LYS PRO VAL SER ARG SER GLY PRO SEQRES 3 Y 986 MET LYS THR LEU LEU VAL ARG VAL MET THR ASP ASP LEU SEQRES 4 Y 986 LYS LYS ARG LEU GLU LYS ARG ARG LYS LYS PRO GLU VAL SEQRES 5 Y 986 MET PRO GLN VAL ILE SER ASN ASN ALA ALA ASN ASN LEU SEQRES 6 Y 986 ARG MET LEU LEU ASP ASP TYR THR LYS MET LYS GLU ALA SEQRES 7 Y 986 ILE LEU GLN VAL TYR TRP GLN GLU PHE LYS ASP ASP HIS SEQRES 8 Y 986 VAL GLY LEU MET CYS LYS PHE ALA GLN PRO ALA SER UNK SEQRES 9 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 10 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 11 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 12 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 13 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 14 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 15 Y 986 UNK UNK UNK GLY LYS PHE GLY GLN ARG ALA LEU ASP PHE SEQRES 16 Y 986 TYR SER ILE HIS VAL THR LYS GLU SER THR HIS PRO VAL SEQRES 17 Y 986 LYS PRO LEU ALA GLN ILE ALA GLY ASN ARG TYR ALA SER SEQRES 18 Y 986 GLY PRO VAL GLY LYS ALA LEU SER ASP ALA CYS MET GLY SEQRES 19 Y 986 THR ILE ALA SER PHE LEU SER LYS TYR GLN ASP ILE ILE SEQRES 20 Y 986 ILE GLU HIS GLN LYS VAL VAL LYS GLY ASN GLN LYS ARG SEQRES 21 Y 986 LEU GLU SER LEU ARG GLU LEU ALA GLY LYS GLU ASN LEU SEQRES 22 Y 986 GLU TYR PRO SER VAL THR LEU PRO PRO GLN PRO HIS THR SEQRES 23 Y 986 LYS GLU GLY VAL ASP ALA TYR ASN GLU VAL ILE ALA ARG SEQRES 24 Y 986 VAL ARG MET TRP VAL ASN LEU ASN LEU TRP GLN LYS LEU SEQRES 25 Y 986 LYS LEU SER ARG ASP ASP ALA LYS PRO LEU LEU ARG LEU SEQRES 26 Y 986 LYS GLY PHE PRO SER PHE PRO VAL VAL GLU ARG ARG GLU SEQRES 27 Y 986 ASN GLU VAL ASP TRP TRP ASN THR ILE ASN GLU VAL LYS SEQRES 28 Y 986 LYS LEU ILE ASP ALA LYS ARG ASP MET GLY ARG VAL PHE SEQRES 29 Y 986 TRP SER GLY VAL THR ALA GLU LYS ARG ASN THR ILE LEU SEQRES 30 Y 986 GLU GLY TYR ASN TYR LEU PRO ASN GLU ASN ASP HIS LYS SEQRES 31 Y 986 LYS ARG GLU GLY SER LEU GLU ASN PRO LYS LYS PRO ALA SEQRES 32 Y 986 LYS ARG GLN PHE GLY ASP LEU LEU LEU TYR LEU GLU LYS SEQRES 33 Y 986 LYS TYR ALA GLY ASP TRP GLY LYS VAL PHE ASP GLU ALA SEQRES 34 Y 986 TRP GLU ARG ILE ASP LYS LYS ILE ALA GLY LEU THR SER SEQRES 35 Y 986 HIS ILE GLU ARG GLU GLU ALA ARG ASN ALA GLU ASP ALA SEQRES 36 Y 986 GLN SER LYS ALA VAL LEU THR ASP TRP LEU ARG ALA LYS SEQRES 37 Y 986 ALA SER PHE VAL LEU GLU ARG LEU LYS GLU MET ASP GLU SEQRES 38 Y 986 LYS GLU PHE TYR ALA CYS GLU ILE GLN LEU GLN LYS TRP SEQRES 39 Y 986 TYR GLY ASP LEU ARG GLY ASN PRO PHE ALA VAL GLU ALA SEQRES 40 Y 986 GLU ASN ARG VAL VAL ASP ILE SER GLY PHE SER ILE GLY SEQRES 41 Y 986 SER ASP GLY HIS SER ILE GLN TYR ARG ASN LEU LEU ALA SEQRES 42 Y 986 TRP LYS TYR LEU GLU ASN GLY LYS ARG GLU PHE TYR LEU SEQRES 43 Y 986 LEU MET ASN TYR GLY LYS LYS GLY ARG ILE ARG PHE THR SEQRES 44 Y 986 ASP GLY THR ASP ILE LYS LYS SER GLY LYS TRP GLN GLY SEQRES 45 Y 986 LEU LEU TYR GLY GLY GLY LYS ALA LYS VAL ILE ASP LEU SEQRES 46 Y 986 THR PHE ASP PRO ASP ASP GLU GLN LEU ILE ILE LEU PRO SEQRES 47 Y 986 LEU ALA PHE GLY THR ARG GLN GLY ARG GLU PHE ILE TRP SEQRES 48 Y 986 ASN ASP LEU LEU SER LEU GLU THR GLY LEU ILE LYS LEU SEQRES 49 Y 986 ALA ASN GLY ARG VAL ILE GLU LYS THR ILE TYR ASN LYS SEQRES 50 Y 986 LYS ILE GLY ARG ASP GLU PRO ALA LEU PHE VAL ALA LEU SEQRES 51 Y 986 THR PHE GLU ARG ARG GLU VAL VAL ASP PRO SER ASN ILE SEQRES 52 Y 986 LYS PRO VAL ASN LEU ILE GLY VAL ALA ARG GLY GLU ASN SEQRES 53 Y 986 ILE PRO ALA VAL ILE ALA LEU THR ASP PRO GLU GLY CYS SEQRES 54 Y 986 PRO LEU PRO GLU PHE LYS ASP SER SER GLY GLY PRO THR SEQRES 55 Y 986 ASP ILE LEU ARG ILE GLY GLU GLY TYR LYS GLU LYS GLN SEQRES 56 Y 986 ARG ALA ILE GLN ALA ALA LYS GLU VAL GLU GLN ARG ARG SEQRES 57 Y 986 ALA GLY GLY TYR SER ARG LYS PHE ALA SER LYS SER ARG SEQRES 58 Y 986 ASN LEU ALA ASP ASP MET VAL ARG ASN SER ALA ARG ASP SEQRES 59 Y 986 LEU PHE TYR HIS ALA VAL THR HIS ASP ALA VAL LEU VAL SEQRES 60 Y 986 PHE ALA ASN LEU SER ARG GLY PHE GLY ARG GLN GLY LYS SEQRES 61 Y 986 ARG THR PHE MET THR GLU ARG GLN TYR THR LYS MET GLU SEQRES 62 Y 986 ASP TRP LEU THR ALA LYS LEU ALA TYR GLU GLY LEU THR SEQRES 63 Y 986 SER LYS THR TYR LEU SER LYS THR LEU ALA GLN TYR THR SEQRES 64 Y 986 SER LYS THR CYS SER ASN CYS GLY PHE UNK UNK UNK UNK SEQRES 65 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 66 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 67 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 68 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 69 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 70 Y 986 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 71 Y 986 UNK UNK ARG PHE SER HIS ARG PRO VAL GLN GLU GLN PHE SEQRES 72 Y 986 VAL CYS LEU ASP CYS GLY HIS GLU VAL HIS ALA ALA GLU SEQRES 73 Y 986 GLN ALA ALA LEU ASN ILE ALA ARG SER TRP LEU PHE LEU SEQRES 74 Y 986 ASN SER ASN SER THR GLU PHE LYS SER TYR LYS SER GLY SEQRES 75 Y 986 LYS GLN PRO PHE VAL GLY ALA TRP GLN ALA PHE TYR LYS SEQRES 76 Y 986 ARG ARG LEU LYS GLU VAL TRP LYS PRO ASN ALA SEQRES 1 B 122 G G C G C G U U U A U U C SEQRES 2 B 122 C A U U A C U U U G G A G SEQRES 3 B 122 C C A G U C C C A G C G A SEQRES 4 B 122 C U A U G U C G U A U G G SEQRES 5 B 122 A C G A A G C G C U U A U SEQRES 6 B 122 U U A U C G G A G A G A A SEQRES 7 B 122 A C C G A U A A G U A A A SEQRES 8 B 122 A C G C A U C A A A G U C SEQRES 9 B 122 C U G C A G C A G A A A A SEQRES 10 B 122 U C A A A HELIX 1 AA1 ARG Y 4 SER Y 13 1 10 HELIX 2 AA2 ASP Y 37 ARG Y 42 1 6 HELIX 3 AA3 ASN Y 60 LYS Y 88 1 29 HELIX 4 AA4 ASP Y 90 PHE Y 98 1 9 HELIX 5 AA5 GLY Y 222 ARG Y 260 1 39 HELIX 6 AA6 GLU Y 262 GLU Y 271 1 10 HELIX 7 AA7 LYS Y 287 LEU Y 308 1 22 HELIX 8 AA8 TRP Y 343 LYS Y 357 1 15 HELIX 9 AA9 GLY Y 361 SER Y 366 1 6 HELIX 10 AB1 GLU Y 371 TYR Y 380 1 10 HELIX 11 AB2 LYS Y 404 LYS Y 417 1 14 HELIX 12 AB3 GLY Y 423 ALA Y 429 1 7 HELIX 13 AB4 ILE Y 433 GLU Y 448 1 16 HELIX 14 AB5 LYS Y 458 LEU Y 473 1 16 HELIX 15 AB6 ARG Y 475 ASP Y 480 1 6 HELIX 16 AB7 GLU Y 481 ASN Y 501 1 21 HELIX 17 AB8 PRO Y 502 ALA Y 504 5 3 HELIX 18 AB9 GLY Y 602 ILE Y 610 1 9 HELIX 19 AC1 TYR Y 711 ARG Y 728 1 18 HELIX 20 AC2 SER Y 738 HIS Y 762 1 25 HELIX 21 AC3 PHE Y 783 ARG Y 787 5 5 HELIX 22 AC4 THR Y 790 TYR Y 802 1 13 HELIX 23 AC5 UNK Y 886 UNK Y 892 1 7 HELIX 24 AC6 UNK Y 897 UNK Y 904 1 8 HELIX 25 AC7 UNK Y 906 PHE Y 914 1 9 HELIX 26 AC8 SER Y 945 ASN Y 950 1 6 HELIX 27 AC9 PRO Y 965 LEU Y 978 1 14 SHEET 1 AA1 2 THR Y 18 LYS Y 19 0 SHEET 2 AA1 2 VAL Y 657 VAL Y 658 -1 O VAL Y 657 N LYS Y 19 SHEET 1 AA2 4 MET Y 27 THR Y 29 0 SHEET 2 AA2 4 THR Y 651 ARG Y 654 -1 O PHE Y 652 N LYS Y 28 SHEET 3 AA2 4 ILE Y 622 THR Y 633 -1 N ASN Y 626 O THR Y 651 SHEET 4 AA2 4 ARG Y 510 ILE Y 514 -1 N ILE Y 514 O GLY Y 627 SHEET 1 AA3 4 MET Y 27 THR Y 29 0 SHEET 2 AA3 4 THR Y 651 ARG Y 654 -1 O PHE Y 652 N LYS Y 28 SHEET 3 AA3 4 ILE Y 622 THR Y 633 -1 N ASN Y 626 O THR Y 651 SHEET 4 AA3 4 PRO Y 644 PHE Y 647 -1 O PHE Y 647 N ILE Y 630 SHEET 1 AA4 3 ARG Y 33 VAL Y 34 0 SHEET 2 AA4 3 ILE Y 595 ALA Y 600 -1 O ALA Y 600 N ARG Y 33 SHEET 3 AA4 3 TYR Y 545 MET Y 548 -1 N LEU Y 546 O LEU Y 597 SHEET 1 AA5 2 SER Y 518 ILE Y 519 0 SHEET 2 AA5 2 ILE Y 526 GLN Y 527 -1 O GLN Y 527 N SER Y 518 SHEET 1 AA6 2 ARG Y 557 PHE Y 558 0 SHEET 2 AA6 2 LEU Y 585 THR Y 586 -1 O THR Y 586 N ARG Y 557 SHEET 1 AA7 3 ILE Y 669 GLY Y 670 0 SHEET 2 AA7 3 LEU Y 766 ALA Y 769 1 O VAL Y 767 N ILE Y 669 SHEET 3 AA7 3 LEU Y 811 THR Y 814 1 O SER Y 812 N LEU Y 766 SSBOND 1 CYS Y 826 CYS Y 928 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000