HEADER LIGASE/TRANSFERASE 11-FEB-19 6NYO TITLE CRYSTAL STRUCTURE OF A HUMAN CDC34-UBIQUITIN THIOESTER MIMETIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 R2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-202; COMPND 5 SYNONYM: E2 UBIQUITIN-CONJUGATING ENZYME R2,UBIQUITIN CARRIER PROTEIN COMPND 6 R2,UBIQUITIN-CONJUGATING ENZYME E2-CDC34B,UBIQUITIN-PROTEIN LIGASE COMPND 7 R2; COMPND 8 EC: 2.3.2.23; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: UBIQUITIN; COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2R2, CDC34B, UBC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29NTEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 13 ORGANISM_COMMON: FISSION YEAST; SOURCE 14 ORGANISM_TAXID: 4896; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CONFORMATIONAL CHANGE, THIOESTER, ADENYLATION, THIOESTER TRANSFER, KEYWDS 2 TRANSTHIOESTERIFICATION, ATP-BINDING, UBIQUITIN E2-BINDING, KEYWDS 3 UBIQUITINATION, LIGASE, LIGASE-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.K.OLSEN,K.M.WILLIAMS,J.H.ATKISON REVDAT 3 11-OCT-23 6NYO 1 REMARK REVDAT 2 01-JAN-20 6NYO 1 REMARK REVDAT 1 07-AUG-19 6NYO 0 JRNL AUTH K.M.WILLIAMS,S.QIE,J.H.ATKISON,S.SALAZAR-ARANGO, JRNL AUTH 2 J.ALAN DIEHL,S.K.OLSEN JRNL TITL STRUCTURAL INSIGHTS INTO E1 RECOGNITION AND THE JRNL TITL 2 UBIQUITIN-CONJUGATING ACTIVITY OF THE E2 ENZYME CDC34. JRNL REF NAT COMMUN V. 10 3296 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31341161 JRNL DOI 10.1038/S41467-019-11061-8 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8006 - 3.6191 0.99 3522 153 0.1611 0.1869 REMARK 3 2 3.6191 - 2.8728 1.00 3386 145 0.1702 0.1854 REMARK 3 3 2.8728 - 2.5097 1.00 3348 145 0.1759 0.2164 REMARK 3 4 2.5097 - 2.2803 1.00 3334 144 0.1694 0.2052 REMARK 3 5 2.2803 - 2.1168 1.00 3312 142 0.1618 0.1956 REMARK 3 6 2.1168 - 1.9920 1.00 3284 142 0.1693 0.1972 REMARK 3 7 1.9920 - 1.8923 1.00 3331 143 0.1708 0.2084 REMARK 3 8 1.8923 - 1.8099 1.00 3270 141 0.1747 0.1735 REMARK 3 9 1.8099 - 1.7402 1.00 3267 141 0.1867 0.2172 REMARK 3 10 1.7402 - 1.6802 1.00 3303 143 0.1902 0.2286 REMARK 3 11 1.6802 - 1.6276 1.00 3286 142 0.2156 0.2588 REMARK 3 12 1.6276 - 1.5811 1.00 3248 139 0.2188 0.2307 REMARK 3 13 1.5811 - 1.5395 1.00 3266 142 0.2408 0.2859 REMARK 3 14 1.5395 - 1.5019 0.98 3204 138 0.2579 0.2619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2251 REMARK 3 ANGLE : 0.786 3055 REMARK 3 CHIRALITY : 0.052 336 REMARK 3 PLANARITY : 0.006 395 REMARK 3 DIHEDRAL : 11.125 1362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.1801 233.4834 258.6227 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.2101 REMARK 3 T33: 0.1678 T12: 0.0331 REMARK 3 T13: -0.0264 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3103 L22: 2.0699 REMARK 3 L33: 1.4817 L12: -0.3466 REMARK 3 L13: -0.5011 L23: 0.5746 REMARK 3 S TENSOR REMARK 3 S11: 0.1050 S12: 0.2424 S13: 0.0738 REMARK 3 S21: -0.3626 S22: -0.3812 S23: 0.4935 REMARK 3 S31: -0.3385 S32: -0.9676 S33: -0.2239 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.5073 222.5284 260.7504 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0781 REMARK 3 T33: 0.1050 T12: -0.0140 REMARK 3 T13: -0.0051 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.5165 L22: 0.9051 REMARK 3 L33: 0.7677 L12: -0.8595 REMARK 3 L13: -0.2588 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.0566 S13: -0.1340 REMARK 3 S21: -0.0353 S22: -0.0717 S23: 0.0980 REMARK 3 S31: 0.0426 S32: -0.0778 S33: -0.0034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.7932 242.6792 266.0045 REMARK 3 T TENSOR REMARK 3 T11: 0.4567 T22: 0.5841 REMARK 3 T33: 0.8381 T12: -0.0590 REMARK 3 T13: 0.0246 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.0425 L22: 0.0367 REMARK 3 L33: 0.0237 L12: 0.0777 REMARK 3 L13: -0.0050 L23: 0.0147 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.2478 S13: 0.4806 REMARK 3 S21: 0.0069 S22: -0.1411 S23: -0.2240 REMARK 3 S31: -0.0215 S32: 0.4598 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.3761 230.1236 258.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.1123 REMARK 3 T33: 0.1594 T12: -0.0299 REMARK 3 T13: 0.0117 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.7104 L22: 0.3495 REMARK 3 L33: 0.5215 L12: -0.5830 REMARK 3 L13: -0.1425 L23: -0.4175 REMARK 3 S TENSOR REMARK 3 S11: 0.2000 S12: 0.2224 S13: 0.3957 REMARK 3 S21: 0.0628 S22: -0.1840 S23: -0.2559 REMARK 3 S31: -0.1578 S32: 0.1799 S33: 0.1394 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.0262 212.6431 258.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.3327 REMARK 3 T33: 0.2259 T12: 0.0742 REMARK 3 T13: 0.0569 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.6564 L22: 0.8352 REMARK 3 L33: 1.3873 L12: 0.0669 REMARK 3 L13: -0.2768 L23: -0.7166 REMARK 3 S TENSOR REMARK 3 S11: 0.1733 S12: 0.2169 S13: -0.4830 REMARK 3 S21: -0.3431 S22: -0.2549 S23: -0.3563 REMARK 3 S31: 0.4703 S32: 0.8087 S33: -0.1092 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.7275 206.2130 258.0892 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.1328 REMARK 3 T33: 0.2397 T12: -0.0056 REMARK 3 T13: -0.0393 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5298 L22: 0.2591 REMARK 3 L33: 1.0319 L12: -0.0417 REMARK 3 L13: 0.0721 L23: -0.0873 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.1184 S13: -0.4373 REMARK 3 S21: -0.0185 S22: -0.0276 S23: 0.0628 REMARK 3 S31: 0.5426 S32: -0.0020 S33: 0.0327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.2182 212.8818 245.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.3171 T22: 0.3488 REMARK 3 T33: 0.2924 T12: -0.0574 REMARK 3 T13: -0.0476 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 0.7001 L22: 0.6978 REMARK 3 L33: 0.2694 L12: -0.4001 REMARK 3 L13: -0.0508 L23: -0.2901 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: 0.3031 S13: 0.2147 REMARK 3 S21: -0.5161 S22: 0.0457 S23: 0.5885 REMARK 3 S31: 0.5137 S32: -0.1419 S33: -0.0191 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID -1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.4045 233.4707 237.3396 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.1978 REMARK 3 T33: 0.1338 T12: 0.0213 REMARK 3 T13: 0.0031 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4603 L22: 0.8949 REMARK 3 L33: 0.3919 L12: 0.1356 REMARK 3 L13: 0.4124 L23: 0.0364 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.0222 S13: 0.2884 REMARK 3 S21: -0.3169 S22: 0.0677 S23: -0.2635 REMARK 3 S31: -0.3360 S32: 0.0027 S33: 0.0185 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 12 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.1564 231.8173 232.5296 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.2313 REMARK 3 T33: 0.1789 T12: 0.0267 REMARK 3 T13: 0.0486 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.5986 L22: 0.3427 REMARK 3 L33: 0.1896 L12: -0.1263 REMARK 3 L13: -0.1863 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: 0.3649 S13: 0.4088 REMARK 3 S21: -0.2476 S22: -0.0546 S23: -0.2559 REMARK 3 S31: 0.0530 S32: -0.0057 S33: 0.0034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.3204 236.1102 238.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1849 REMARK 3 T33: 0.1333 T12: -0.0278 REMARK 3 T13: -0.0041 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 0.8978 L22: 0.8669 REMARK 3 L33: 0.8900 L12: -0.6642 REMARK 3 L13: 0.1731 L23: 0.3731 REMARK 3 S TENSOR REMARK 3 S11: -0.2126 S12: 0.1829 S13: 0.4141 REMARK 3 S21: -0.1930 S22: 0.2583 S23: -0.1861 REMARK 3 S31: -0.2621 S32: 0.3689 S33: 0.0675 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.0877 234.1006 246.5293 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.1592 REMARK 3 T33: 0.0641 T12: -0.0313 REMARK 3 T13: -0.0090 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 1.3333 L22: 2.1818 REMARK 3 L33: 0.7616 L12: -1.3708 REMARK 3 L13: -0.8641 L23: 0.5621 REMARK 3 S TENSOR REMARK 3 S11: 0.2071 S12: -0.3343 S13: 0.3256 REMARK 3 S21: -0.0451 S22: -0.1062 S23: -0.6691 REMARK 3 S31: -0.2215 S32: 0.1573 S33: 0.1474 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.4193 223.0571 241.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.2322 REMARK 3 T33: 0.1810 T12: 0.0365 REMARK 3 T13: 0.0003 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.1360 L22: 0.5756 REMARK 3 L33: 0.5608 L12: 0.2735 REMARK 3 L13: -0.2191 L23: -0.5449 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: 0.0376 S13: -0.3045 REMARK 3 S21: -0.2186 S22: -0.1329 S23: -0.3102 REMARK 3 S31: 0.3058 S32: 0.3013 S33: -0.0345 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 57 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.6549 222.4734 234.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.2098 REMARK 3 T33: 0.1858 T12: 0.0118 REMARK 3 T13: -0.0163 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0760 L22: 0.1177 REMARK 3 L33: 0.0427 L12: 0.0610 REMARK 3 L13: -0.0367 L23: 0.0199 REMARK 3 S TENSOR REMARK 3 S11: 0.1963 S12: 0.3298 S13: -0.2987 REMARK 3 S21: -0.3225 S22: -0.1117 S23: 0.0960 REMARK 3 S31: 0.3340 S32: -0.1324 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 66 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.6224 231.1104 245.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.2039 REMARK 3 T33: 0.1265 T12: 0.0043 REMARK 3 T13: -0.0162 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2070 L22: 0.0991 REMARK 3 L33: 0.1781 L12: -0.1421 REMARK 3 L13: 0.1897 L23: -0.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.2282 S12: -0.2436 S13: -0.3251 REMARK 3 S21: -0.0404 S22: -0.0505 S23: -0.0734 REMARK 3 S31: 0.1165 S32: -0.1340 S33: 0.0110 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 72 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.6118 232.7403 257.8111 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.3460 REMARK 3 T33: 0.2377 T12: -0.0881 REMARK 3 T13: -0.0075 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 0.1662 L22: 2.1173 REMARK 3 L33: 0.1176 L12: -0.5801 REMARK 3 L13: -0.0443 L23: 0.0921 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.1544 S13: 0.0924 REMARK 3 S21: 0.5763 S22: -0.0698 S23: -0.4046 REMARK 3 S31: -0.5114 S32: 0.8933 S33: 0.0301 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.670 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03 M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 23% PEG 8,000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.29250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.89250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.89250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.29250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 193 REMARK 465 THR A 194 REMARK 465 LYS A 195 REMARK 465 VAL A 196 REMARK 465 PRO A 197 REMARK 465 SER A 198 REMARK 465 ASN A 199 REMARK 465 ASP A 200 REMARK 465 ASN A 201 REMARK 465 SER A 202 REMARK 465 MET E -19 REMARK 465 GLY E -18 REMARK 465 SER E -17 REMARK 465 SER E -16 REMARK 465 HIS E -15 REMARK 465 HIS E -14 REMARK 465 HIS E -13 REMARK 465 HIS E -12 REMARK 465 HIS E -11 REMARK 465 HIS E -10 REMARK 465 SER E -9 REMARK 465 SER E -8 REMARK 465 GLY E -7 REMARK 465 LEU E -6 REMARK 465 VAL E -5 REMARK 465 PRO E -4 REMARK 465 ARG E -3 REMARK 465 GLY E -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 35 O HOH A 401 2.03 REMARK 500 O HOH A 625 O HOH A 629 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 636 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 638 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U94 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NYA RELATED DB: PDB REMARK 900 RELATED ID: 6NYD RELATED DB: PDB DBREF 6NYO A 1 202 UNP Q712K3 UB2R2_HUMAN 1 202 DBREF 6NYO E -19 76 PDB 6NYO 6NYO -19 76 SEQADV 6NYO GLY A -1 UNP Q712K3 EXPRESSION TAG SEQADV 6NYO ALA A 0 UNP Q712K3 EXPRESSION TAG SEQADV 6NYO LYS A 93 UNP Q712K3 CYS 93 ENGINEERED MUTATION SEQRES 1 A 204 GLY ALA MET ALA GLN GLN GLN MET THR SER SER GLN LYS SEQRES 2 A 204 ALA LEU MET LEU GLU LEU LYS SER LEU GLN GLU GLU PRO SEQRES 3 A 204 VAL GLU GLY PHE ARG ILE THR LEU VAL ASP GLU SER ASP SEQRES 4 A 204 LEU TYR ASN TRP GLU VAL ALA ILE PHE GLY PRO PRO ASN SEQRES 5 A 204 THR LEU TYR GLU GLY GLY TYR PHE LYS ALA HIS ILE LYS SEQRES 6 A 204 PHE PRO ILE ASP TYR PRO TYR SER PRO PRO THR PHE ARG SEQRES 7 A 204 PHE LEU THR LYS MET TRP HIS PRO ASN ILE TYR GLU ASN SEQRES 8 A 204 GLY ASP VAL LYS ILE SER ILE LEU HIS PRO PRO VAL ASP SEQRES 9 A 204 ASP PRO GLN SER GLY GLU LEU PRO SER GLU ARG TRP ASN SEQRES 10 A 204 PRO THR GLN ASN VAL ARG THR ILE LEU LEU SER VAL ILE SEQRES 11 A 204 SER LEU LEU ASN GLU PRO ASN THR PHE SER PRO ALA ASN SEQRES 12 A 204 VAL ASP ALA SER VAL MET PHE ARG LYS TRP ARG ASP SER SEQRES 13 A 204 LYS GLY LYS ASP LYS GLU TYR ALA GLU ILE ILE ARG LYS SEQRES 14 A 204 GLN VAL SER ALA THR LYS ALA GLU ALA GLU LYS ASP GLY SEQRES 15 A 204 VAL LYS VAL PRO THR THR LEU ALA GLU TYR CYS ILE LYS SEQRES 16 A 204 THR LYS VAL PRO SER ASN ASP ASN SER SEQRES 1 E 96 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 E 96 LEU VAL PRO ARG GLY SER HIS MET GLN ILE PHE VAL LYS SEQRES 3 E 96 THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU SER SEQRES 4 E 96 SER ASP THR ILE ASP ASN VAL LYS SER LYS ILE GLN ASP SEQRES 5 E 96 LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE SEQRES 6 E 96 ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP SEQRES 7 E 96 TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU SEQRES 8 E 96 ARG LEU ARG GLY GLY HET U94 A 301 29 HET EDO A 302 4 HET PO4 A 303 5 HET EDO E 101 4 HET EDO E 102 4 HETNAM U94 4,5-DIDEOXY-5-(3',5'-DICHLOROBIPHENYL-4-YL)-4- HETNAM 2 U94 [(METHOXYACETYL)AMINO]-L-ARABINONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 U94 C20 H21 CL2 N O6 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 5 PO4 O4 P 3- FORMUL 8 HOH *319(H2 O) HELIX 1 AA1 THR A 7 GLU A 23 1 17 HELIX 2 AA2 ILE A 94 HIS A 98 5 5 HELIX 3 AA3 LEU A 109 ARG A 113 5 5 HELIX 4 AA4 ASN A 119 GLU A 133 1 15 HELIX 5 AA5 ASN A 141 SER A 154 1 14 HELIX 6 AA6 LYS A 159 THR A 172 1 14 HELIX 7 AA7 THR A 172 ASP A 179 1 8 HELIX 8 AA8 THR A 186 CYS A 191 1 6 HELIX 9 AA9 THR E 22 GLY E 35 1 14 HELIX 10 AB1 PRO E 37 ASP E 39 5 3 HELIX 11 AB2 LEU E 56 ASN E 60 5 5 SHEET 1 AA1 4 PHE A 28 LEU A 32 0 SHEET 2 AA1 4 ASN A 40 PHE A 46 -1 O GLU A 42 N THR A 31 SHEET 3 AA1 4 TYR A 57 LYS A 63 -1 O PHE A 58 N ILE A 45 SHEET 4 AA1 4 THR A 74 PHE A 77 -1 O ARG A 76 N HIS A 61 SHEET 1 AA2 5 THR E 12 GLU E 18 0 SHEET 2 AA2 5 HIS E 0 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 AA2 5 THR E 66 LEU E 71 1 O LEU E 67 N PHE E 4 SHEET 4 AA2 5 GLN E 41 PHE E 45 -1 N ARG E 42 O VAL E 70 SHEET 5 AA2 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 LINK NZ LYS A 93 C GLY E 76 1555 1555 1.33 CISPEP 1 TYR A 68 PRO A 69 0 8.62 SITE 1 AC1 16 PRO A 48 ASN A 50 THR A 51 LEU A 52 SITE 2 AC1 16 TYR A 53 PHE A 58 ILE A 128 LEU A 131 SITE 3 AC1 16 ASN A 132 TRP A 151 HOH A 559 GLY E 47 SITE 4 AC1 16 LYS E 48 GLU E 51 HOH E 234 HOH E 235 SITE 1 AC2 4 LYS A 63 PHE A 64 PRO A 65 HOH A 471 SITE 1 AC3 6 TYR A 39 PHE A 64 ILE A 66 HOH A 404 SITE 2 AC3 6 HOH A 410 HOH A 418 SITE 1 AC4 3 THR E 7 LEU E 8 LEU E 69 SITE 1 AC5 4 GLU A 133 ASN A 135 ARG E 72 LEU E 73 CRYST1 44.585 55.737 119.785 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008348 0.00000