HEADER DNA 24-FEB-19 6O2L TITLE NMR STRUCTURE OF THE 2:1 COMPLEX OF A CARBAZOLE DERIVATIVE BMVC BOUND TITLE 2 TO C-MYC G-QUADRUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS G-QUADRUPLEX DNA, DRUG-DNA COMPLEX, BMVC, DNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.LIN,W.LIU,D.YANG REVDAT 4 01-MAY-24 6O2L 1 REMARK REVDAT 3 06-MAY-20 6O2L 1 JRNL REVDAT 2 04-DEC-19 6O2L 1 REMARK REVDAT 1 23-OCT-19 6O2L 0 JRNL AUTH W.LIU,C.LIN,G.WU,J.DAI,T.C.CHANG,D.YANG JRNL TITL STRUCTURES OF 1:1 AND 2:1 COMPLEXES OF BMVC AND MYC PROMOTER JRNL TITL 2 G-QUADRUPLEX REVEAL A MECHANISM OF LIGAND CONFORMATION JRNL TITL 3 ADJUSTMENT FOR G4-RECOGNITION. JRNL REF NUCLEIC ACIDS RES. V. 47 11931 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31740959 JRNL DOI 10.1093/NAR/GKZ1015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR, INSIGHT II REMARK 3 AUTHORS : BRUNGER (X-PLOR), ACCELRYS SOFTWARE INC. (INSIGHT REMARK 3 II) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA-DISTANCE GEOMETRY SIMULATED REMARK 3 ANNEALING REMARK 4 REMARK 4 6O2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239362. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM DNA (5' REMARK 210 -D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP* REMARK 210 AP*A)-3'), 3 MM BMVC, 25 MM POTASSIUM PHOSPHATE, 70 MM POTASSIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D DQF-COSY; 2D REMARK 210 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, INSIGHT II REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BO6 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BO6 A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30577 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE 2:1 COMPLEX OF A CARBAZOLE DERIVATIVE BMVC REMARK 900 BOUND TO C-MYC G-QUADRUPLEX DBREF 6O2L A 4 25 PDB 6O2L 6O2L 4 25 SEQRES 1 A 22 DT DG DA DG DG DG DT DG DG DG DT DA DG SEQRES 2 A 22 DG DG DT DG DG DG DT DA DA HET BO6 A 101 56 HET BO6 A 102 56 HETNAM BO6 3,6-BIS[(E)-2-(1-METHYLPYRIDIN-1-IUM-4-YL)ETHENYL]-9H- HETNAM 2 BO6 CARBAZOLE FORMUL 2 BO6 2(C28 H25 N3 2+) SITE 1 AC1 4 DT A 4 DA A 6 DG A 11 DG A 20 SITE 1 AC2 4 DG A 9 DG A 22 DT A 23 DA A 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1