HEADER STRUCTURAL PROTEIN 25-FEB-19 6O31 TITLE CRYSTAL STRUCTURE OF THE ACTIN-BINDING DOMAIN OF HUMAN ALPHA-ACTININ-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACTININ-4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACTN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS CALPONIN HOMOLOGY DOMAIN, CH DOMAIN, STRUCTURAL PROTEIN, ACTIN- KEYWDS 2 BINDING PROTEIN, ACTIN-CROSSLINKING, GLOMERULOSCLEROS SPECTRIN KEYWDS 3 FAMILY, DISEASE MUTATION, NUCLEUS, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR G.BIRRANE,D.FENG REVDAT 3 11-OCT-23 6O31 1 REMARK REVDAT 2 09-SEP-20 6O31 1 JRNL REVDAT 1 26-FEB-20 6O31 0 JRNL AUTH D.FENG,M.KUMAR,J.MUNTEL,S.B.GURLEY,G.BIRRANE,I.E.STILLMAN, JRNL AUTH 2 L.DING,M.WANG,S.AHMED,J.SCHLONDORFF,S.L.ALPER,T.FERRANTE, JRNL AUTH 3 S.L.MARQUEZ,C.F.NG,R.NOVAK,D.E.INGBER,H.STEEN,M.R.POLLAK JRNL TITL PHOSPHORYLATION OF ACTN4 LEADS TO PODOCYTE VULNERABILITY AND JRNL TITL 2 PROTEINURIC GLOMERULOSCLEROSIS. JRNL REF J. AM. SOC. NEPHROL. V. 31 1479 2020 JRNL REFN ISSN 1533-3450 JRNL PMID 32540856 JRNL DOI 10.1681/ASN.2019101032 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1909 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1827 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2587 ; 1.825 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4248 ; 1.479 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 6.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;35.408 ;22.816 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 363 ;15.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2111 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 917 ; 1.246 ; 1.748 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 916 ; 1.243 ; 1.747 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1148 ; 1.838 ; 2.618 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1149 ; 1.838 ; 2.619 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 990 ; 1.639 ; 1.896 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 990 ; 1.638 ; 1.896 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1431 ; 2.481 ; 2.773 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8164 ; 4.698 ;33.287 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8074 ; 4.631 ;32.883 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7960 12.9920 10.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.4147 T22: 0.1874 REMARK 3 T33: 0.1401 T12: -0.0731 REMARK 3 T13: 0.1917 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 6.1878 L22: 5.5195 REMARK 3 L33: 8.2444 L12: 0.0952 REMARK 3 L13: -4.0593 L23: 3.3257 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: 0.4400 S13: 0.0202 REMARK 3 S21: -1.2036 S22: 0.3090 S23: -0.7861 REMARK 3 S31: -0.7585 S32: 0.2933 S33: -0.4176 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6350 4.8650 29.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.0094 REMARK 3 T33: 0.1223 T12: -0.0110 REMARK 3 T13: 0.0830 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.5850 L22: 3.4647 REMARK 3 L33: 3.4203 L12: 0.9193 REMARK 3 L13: -2.0380 L23: -0.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.3436 S12: 0.0933 S13: -0.2735 REMARK 3 S21: -0.1484 S22: -0.0075 S23: 0.3118 REMARK 3 S31: 0.3698 S32: -0.0718 S33: 0.3511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6O31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 - 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36924 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2R0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM CHLORIDE, 5% GLYCEROL, 1MM REMARK 280 EDTA, 15-18% PEG5000-MME, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 151.32750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 19.03450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 19.03450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.66375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 19.03450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 19.03450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 226.99125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 19.03450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 19.03450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.66375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 19.03450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 19.03450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 226.99125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 151.32750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 GLY A 40 REMARK 465 ALA A 41 REMARK 465 MET A 42 REMARK 465 ASP A 43 REMARK 465 GLY A 270 REMARK 465 ALA A 271 REMARK 465 LEU A 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 95 NE ARG A 95 7465 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 127 -70.50 -121.91 REMARK 500 ASN A 138 90.50 -67.22 REMARK 500 ALA A 165 -138.71 57.63 REMARK 500 HIS A 189 -93.47 -138.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 6O31 A 47 271 UNP B4E337 B4E337_HUMAN 47 271 SEQADV 6O31 GLY A 39 UNP B4E337 EXPRESSION TAG SEQADV 6O31 GLY A 40 UNP B4E337 EXPRESSION TAG SEQADV 6O31 ALA A 41 UNP B4E337 EXPRESSION TAG SEQADV 6O31 MET A 42 UNP B4E337 EXPRESSION TAG SEQADV 6O31 ASP A 43 UNP B4E337 EXPRESSION TAG SEQADV 6O31 PRO A 44 UNP B4E337 EXPRESSION TAG SEQADV 6O31 GLU A 45 UNP B4E337 EXPRESSION TAG SEQADV 6O31 PHE A 46 UNP B4E337 EXPRESSION TAG SEQADV 6O31 LEU A 272 UNP B4E337 EXPRESSION TAG SEQRES 1 A 234 GLY GLY ALA MET ASP PRO GLU PHE ALA TRP GLU LYS GLN SEQRES 2 A 234 GLN ARG LYS THR PHE THR ALA TRP CYS ASN SER HIS LEU SEQRES 3 A 234 ARG LYS ALA GLY THR GLN ILE GLU ASN ILE ASP GLU ASP SEQRES 4 A 234 PHE ARG ASP GLY LEU LYS LEU MET LEU LEU LEU GLU VAL SEQRES 5 A 234 ILE SER GLY GLU ARG LEU PRO LYS PRO GLU ARG GLY LYS SEQRES 6 A 234 MET ARG VAL HIS LYS ILE ASN ASN VAL ASN LYS ALA LEU SEQRES 7 A 234 ASP PHE ILE ALA SER LYS GLY VAL LYS LEU VAL SER ILE SEQRES 8 A 234 GLY ALA GLU GLU ILE VAL ASP GLY ASN ALA LYS MET THR SEQRES 9 A 234 LEU GLY MET ILE TRP THR ILE ILE LEU ARG PHE ALA ILE SEQRES 10 A 234 GLN ASP ILE SER VAL GLU GLU THR SER ALA LYS GLU GLY SEQRES 11 A 234 LEU LEU LEU TRP CYS GLN ARG LYS THR ALA PRO TYR LYS SEQRES 12 A 234 ASN VAL ASN VAL GLN ASN PHE HIS ILE SER TRP LYS ASP SEQRES 13 A 234 GLY LEU ALA PHE ASN ALA LEU ILE HIS ARG HIS ARG PRO SEQRES 14 A 234 GLU LEU ILE GLU TYR ASP LYS LEU ARG LYS ASP ASP PRO SEQRES 15 A 234 VAL THR ASN LEU ASN ASN ALA PHE GLU VAL ALA GLU LYS SEQRES 16 A 234 TYR LEU ASP ILE PRO LYS MET LEU ASP ALA GLU ASP ILE SEQRES 17 A 234 VAL ASN THR ALA ARG PRO ASP GLU LYS ALA ILE MET THR SEQRES 18 A 234 TYR VAL SER SER PHE TYR HIS ALA PHE SER GLY ALA LEU FORMUL 2 HOH *116(H2 O) HELIX 1 AA1 PHE A 46 ARG A 65 1 20 HELIX 2 AA2 LYS A 66 GLY A 68 5 3 HELIX 3 AA3 GLY A 81 GLY A 93 1 13 HELIX 4 AA4 MET A 104 LYS A 122 1 19 HELIX 5 AA5 GLY A 130 ASP A 136 1 7 HELIX 6 AA6 ASN A 138 ILE A 155 1 18 HELIX 7 AA7 ALA A 165 ALA A 178 1 14 HELIX 8 AA8 HIS A 189 LYS A 193 5 5 HELIX 9 AA9 GLY A 195 ARG A 206 1 12 HELIX 10 AB1 PRO A 207 ILE A 210 5 4 HELIX 11 AB2 GLU A 211 LEU A 215 5 5 HELIX 12 AB3 ASP A 219 ASP A 236 1 18 HELIX 13 AB4 ASP A 242 THR A 249 1 8 HELIX 14 AB5 ASP A 253 SER A 269 1 17 SHEET 1 AA1 2 SER A 159 VAL A 160 0 SHEET 2 AA1 2 THR A 163 SER A 164 -1 O THR A 163 N VAL A 160 CRYST1 38.069 38.069 302.655 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003304 0.00000