HEADER DE NOVO PROTEIN 25-FEB-19 6O35 TITLE CRYSTAL STRUCTURE OF A DE NOVO DESIGNED OCTAMERIC HELICAL-BUNDLE TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED WSHC8; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICAL BUNDLE, OCTAMER, COMPUTATIONAL DESIGN, PORE, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BICK,C.XU,B.SANKARAN,D.BAKER REVDAT 6 03-APR-24 6O35 1 REMARK REVDAT 5 13-MAR-24 6O35 1 REMARK REVDAT 4 16-SEP-20 6O35 1 JRNL REVDAT 3 09-SEP-20 6O35 1 JRNL REVDAT 2 29-APR-20 6O35 1 AUTHOR JRNL REVDAT 1 18-MAR-20 6O35 0 JRNL AUTH C.XU,P.LU,T.M.GAMAL EL-DIN,X.Y.PEI,M.C.JOHNSON,A.UYEDA, JRNL AUTH 2 M.J.BICK,Q.XU,D.JIANG,H.BAI,G.REGGIANO,Y.HSIA,T.J.BRUNETTE, JRNL AUTH 3 J.DOU,D.MA,E.M.LYNCH,S.E.BOYKEN,P.S.HUANG,L.STEWART, JRNL AUTH 4 F.DIMAIO,J.M.KOLLMAN,B.F.LUISI,T.MATSUURA,W.A.CATTERALL, JRNL AUTH 5 D.BAKER JRNL TITL COMPUTATIONAL DESIGN OF TRANSMEMBRANE PORES. JRNL REF NATURE V. 585 129 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32848250 JRNL DOI 10.1038/S41586-020-2646-5 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3112: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4480 - 6.0375 0.99 1969 137 0.2842 0.2879 REMARK 3 2 6.0375 - 4.7962 0.99 1983 132 0.2581 0.2904 REMARK 3 3 4.7962 - 4.1912 0.99 1980 139 0.1953 0.2357 REMARK 3 4 4.1912 - 3.8085 1.00 1984 133 0.2086 0.2586 REMARK 3 5 3.8085 - 3.5358 0.99 1989 138 0.2137 0.2910 REMARK 3 6 3.5358 - 3.3275 1.00 1957 134 0.2499 0.2813 REMARK 3 7 3.3275 - 3.1610 1.00 1995 139 0.2723 0.3288 REMARK 3 8 3.1610 - 3.0235 1.00 2008 137 0.2728 0.3715 REMARK 3 9 3.0235 - 2.9072 0.99 1979 136 0.2790 0.3206 REMARK 3 10 2.9072 - 2.8069 1.00 1979 135 0.3037 0.3451 REMARK 3 11 2.8069 - 2.7192 1.00 1983 135 0.3061 0.3415 REMARK 3 12 2.7192 - 2.6415 1.00 2009 134 0.3176 0.2926 REMARK 3 13 2.6415 - 2.5719 1.00 1985 136 0.3097 0.2930 REMARK 3 14 2.5719 - 2.5092 1.00 1999 139 0.3278 0.3493 REMARK 3 15 2.5092 - 2.4522 0.99 1957 135 0.3476 0.3819 REMARK 3 16 2.4522 - 2.4000 1.00 1993 133 0.3994 0.4307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2936 REMARK 3 ANGLE : 0.365 3956 REMARK 3 CHIRALITY : 0.019 480 REMARK 3 PLANARITY : 0.001 503 REMARK 3 DIHEDRAL : 12.351 1844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 100) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0586 17.4288 36.0800 REMARK 3 T TENSOR REMARK 3 T11: 0.4374 T22: 0.2535 REMARK 3 T33: 0.3307 T12: 0.0391 REMARK 3 T13: -0.0002 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.4228 L22: 0.3241 REMARK 3 L33: 0.1074 L12: -0.0119 REMARK 3 L13: -0.1995 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.1233 S12: 0.0140 S13: 0.0941 REMARK 3 S21: -0.0736 S22: -0.1160 S23: -0.0622 REMARK 3 S31: -0.0515 S32: -0.0396 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 99) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9434 8.4583 35.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.3989 REMARK 3 T33: 0.3243 T12: 0.0270 REMARK 3 T13: -0.0226 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3935 L22: 1.1779 REMARK 3 L33: 0.1492 L12: -0.0778 REMARK 3 L13: 0.1227 L23: -0.2799 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.1548 S13: 0.0293 REMARK 3 S21: -0.1318 S22: 0.0010 S23: -0.0051 REMARK 3 S31: 0.0160 S32: -0.5656 S33: -0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 100) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9020 -5.6985 36.3528 REMARK 3 T TENSOR REMARK 3 T11: 0.2403 T22: 0.3683 REMARK 3 T33: 0.3395 T12: -0.0727 REMARK 3 T13: -0.0404 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.5047 L22: 0.7784 REMARK 3 L33: 0.1660 L12: -0.2086 REMARK 3 L13: 0.0019 L23: 0.1855 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.0599 S13: 0.0200 REMARK 3 S21: -0.0677 S22: 0.0703 S23: 0.1641 REMARK 3 S31: 0.1058 S32: -0.0362 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 99) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1555 -16.5168 36.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.3455 REMARK 3 T33: 0.3266 T12: -0.0503 REMARK 3 T13: -0.0267 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.4638 L22: 0.0857 REMARK 3 L33: 0.1456 L12: -0.1783 REMARK 3 L13: -0.0031 L23: 0.0540 REMARK 3 S TENSOR REMARK 3 S11: 0.0944 S12: 0.0643 S13: -0.0373 REMARK 3 S21: -0.2096 S22: 0.0887 S23: 0.0723 REMARK 3 S31: 0.3757 S32: -0.0990 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) AND REMARK 200 MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : XDS JAN 26, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 34.444 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.19210 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.69800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2. REMARK 200 STARTING MODEL: COMPUTATIONAL MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MAGNESIUM FORMATE DIHYDRATE 0.1 REMARK 280 M BIS-TRIS 5.5, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.72000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.84200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.84200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -241.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.44000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY B -1 REMARK 465 ILE B 100 REMARK 465 GLY C -1 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 ILE D 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 TYR A 12 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 15 CD CE NZ REMARK 470 LYS A 17 CD CE NZ REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLN A 20 OE1 NE2 REMARK 470 ARG A 22 NE CZ NH1 NH2 REMARK 470 LYS A 25 CE NZ REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 LYS A 32 NZ REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU A 47 CD OE1 OE2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 60 CE NZ REMARK 470 LEU A 68 CD1 CD2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 GLU A 76 CD OE1 OE2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 LEU A 93 CD1 CD2 REMARK 470 GLU A 96 CD OE1 OE2 REMARK 470 LEU A 97 CG CD1 CD2 REMARK 470 ARG A 98 CD NE CZ NH1 NH2 REMARK 470 HIS A 99 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 100 CG1 CG2 CD1 REMARK 470 SER B 0 OG REMARK 470 SER B 1 OG REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 8 CD NE CZ NH1 NH2 REMARK 470 ARG B 10 CD NE CZ NH1 NH2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 LYS B 15 CD CE NZ REMARK 470 LYS B 17 CD CE NZ REMARK 470 GLN B 20 OE1 NE2 REMARK 470 LYS B 23 CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 GLU B 33 CD OE1 OE2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 GLU B 40 CD OE1 OE2 REMARK 470 ARG B 43 CD NE CZ NH1 NH2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 55 CD OE1 OE2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 62 CD OE1 NE2 REMARK 470 GLU B 76 CD OE1 OE2 REMARK 470 LYS B 80 CD CE NZ REMARK 470 LYS B 82 CD CE NZ REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 GLN B 89 CD OE1 NE2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 SER C 0 OG REMARK 470 SER C 1 OG REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 470 LEU C 5 CD1 CD2 REMARK 470 ARG C 10 NE CZ NH1 NH2 REMARK 470 LYS C 14 CG CD CE NZ REMARK 470 LYS C 15 CG CD CE NZ REMARK 470 LYS C 17 CD CE NZ REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 GLN C 20 CD OE1 NE2 REMARK 470 GLU C 21 CD OE1 OE2 REMARK 470 LYS C 25 CD CE NZ REMARK 470 LYS C 32 CD CE NZ REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 ARG C 37 CD NE CZ NH1 NH2 REMARK 470 GLU C 39 CD OE1 OE2 REMARK 470 GLU C 40 CD OE1 OE2 REMARK 470 ILE C 42 CG1 CG2 CD1 REMARK 470 ARG C 43 CZ NH1 NH2 REMARK 470 GLU C 53 CG CD OE1 OE2 REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 470 ARG C 58 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 62 CD OE1 NE2 REMARK 470 LYS C 80 CE NZ REMARK 470 LYS C 82 CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 100 C O CB CG1 CG2 CD1 REMARK 470 SER D 1 OG REMARK 470 GLU D 3 CD OE1 OE2 REMARK 470 GLU D 4 CD OE1 OE2 REMARK 470 ARG D 8 CD NE CZ NH1 NH2 REMARK 470 GLU D 11 CD OE1 OE2 REMARK 470 LYS D 17 CD CE NZ REMARK 470 GLU D 21 CG CD OE1 OE2 REMARK 470 ARG D 22 CD NE CZ NH1 NH2 REMARK 470 LYS D 23 NZ REMARK 470 LYS D 25 CD CE NZ REMARK 470 GLU D 29 CD OE1 OE2 REMARK 470 LYS D 32 CD CE NZ REMARK 470 GLU D 40 CD OE1 OE2 REMARK 470 ARG D 43 NE CZ NH1 NH2 REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 GLU D 53 CG CD OE1 OE2 REMARK 470 GLU D 55 CG CD OE1 OE2 REMARK 470 LEU D 56 CD1 CD2 REMARK 470 ARG D 58 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 69 CD OE1 OE2 REMARK 470 GLU D 76 CD OE1 OE2 REMARK 470 GLU D 78 CG CD OE1 OE2 REMARK 470 LYS D 80 CD CE NZ REMARK 470 LYS D 82 CD CE NZ REMARK 470 GLN D 89 CD OE1 NE2 REMARK 470 LEU D 93 CD1 CD2 REMARK 470 ARG D 98 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 56 H LYS C 60 1.59 REMARK 500 OG SER A 1 O HOH A 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 98 -71.80 -90.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 6O35 A -1 100 PDB 6O35 6O35 -1 100 DBREF 6O35 B -1 100 PDB 6O35 6O35 -1 100 DBREF 6O35 C -1 100 PDB 6O35 6O35 -1 100 DBREF 6O35 D -1 100 PDB 6O35 6O35 -1 100 SEQRES 1 A 102 GLY SER SER ALA GLU GLU LEU LEU ARG ARG SER ARG GLU SEQRES 2 A 102 TYR LEU LYS LYS VAL LYS GLU GLU GLN GLU ARG LYS ALA SEQRES 3 A 102 LYS GLU PHE GLN GLU LEU LEU LYS GLU LEU SER GLU ARG SEQRES 4 A 102 SER GLU GLU LEU ILE ARG GLU LEU GLU GLU LYS GLY ALA SEQRES 5 A 102 ALA SER GLU ALA GLU LEU ALA ARG MET LYS GLN GLN HIS SEQRES 6 A 102 MET THR ALA TYR LEU GLU ALA GLN LEU THR ALA TRP GLU SEQRES 7 A 102 ILE GLU SER LYS SER LYS ILE ALA LEU LEU GLU LEU GLN SEQRES 8 A 102 GLN ASN GLN LEU ASN LEU GLU LEU ARG HIS ILE SEQRES 1 B 102 GLY SER SER ALA GLU GLU LEU LEU ARG ARG SER ARG GLU SEQRES 2 B 102 TYR LEU LYS LYS VAL LYS GLU GLU GLN GLU ARG LYS ALA SEQRES 3 B 102 LYS GLU PHE GLN GLU LEU LEU LYS GLU LEU SER GLU ARG SEQRES 4 B 102 SER GLU GLU LEU ILE ARG GLU LEU GLU GLU LYS GLY ALA SEQRES 5 B 102 ALA SER GLU ALA GLU LEU ALA ARG MET LYS GLN GLN HIS SEQRES 6 B 102 MET THR ALA TYR LEU GLU ALA GLN LEU THR ALA TRP GLU SEQRES 7 B 102 ILE GLU SER LYS SER LYS ILE ALA LEU LEU GLU LEU GLN SEQRES 8 B 102 GLN ASN GLN LEU ASN LEU GLU LEU ARG HIS ILE SEQRES 1 C 102 GLY SER SER ALA GLU GLU LEU LEU ARG ARG SER ARG GLU SEQRES 2 C 102 TYR LEU LYS LYS VAL LYS GLU GLU GLN GLU ARG LYS ALA SEQRES 3 C 102 LYS GLU PHE GLN GLU LEU LEU LYS GLU LEU SER GLU ARG SEQRES 4 C 102 SER GLU GLU LEU ILE ARG GLU LEU GLU GLU LYS GLY ALA SEQRES 5 C 102 ALA SER GLU ALA GLU LEU ALA ARG MET LYS GLN GLN HIS SEQRES 6 C 102 MET THR ALA TYR LEU GLU ALA GLN LEU THR ALA TRP GLU SEQRES 7 C 102 ILE GLU SER LYS SER LYS ILE ALA LEU LEU GLU LEU GLN SEQRES 8 C 102 GLN ASN GLN LEU ASN LEU GLU LEU ARG HIS ILE SEQRES 1 D 102 GLY SER SER ALA GLU GLU LEU LEU ARG ARG SER ARG GLU SEQRES 2 D 102 TYR LEU LYS LYS VAL LYS GLU GLU GLN GLU ARG LYS ALA SEQRES 3 D 102 LYS GLU PHE GLN GLU LEU LEU LYS GLU LEU SER GLU ARG SEQRES 4 D 102 SER GLU GLU LEU ILE ARG GLU LEU GLU GLU LYS GLY ALA SEQRES 5 D 102 ALA SER GLU ALA GLU LEU ALA ARG MET LYS GLN GLN HIS SEQRES 6 D 102 MET THR ALA TYR LEU GLU ALA GLN LEU THR ALA TRP GLU SEQRES 7 D 102 ILE GLU SER LYS SER LYS ILE ALA LEU LEU GLU LEU GLN SEQRES 8 D 102 GLN ASN GLN LEU ASN LEU GLU LEU ARG HIS ILE FORMUL 5 HOH *17(H2 O) HELIX 1 AA1 SER A 0 GLY A 49 1 50 HELIX 2 AA2 SER A 52 ILE A 100 1 49 HELIX 3 AA3 SER B 1 GLY B 49 1 49 HELIX 4 AA4 SER B 52 HIS B 99 1 48 HELIX 5 AA5 SER C 1 GLY C 49 1 49 HELIX 6 AA6 SER C 52 HIS C 99 1 48 HELIX 7 AA7 ALA D 2 LYS D 48 1 47 HELIX 8 AA8 SER D 52 HIS D 99 1 48 CRYST1 59.440 103.684 72.980 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013702 0.00000