HEADER SIGNALING PROTEIN 26-FEB-19 6O3C
TITLE CRYSTAL STRUCTURE OF ACTIVE SMOOTHENED BOUND TO SAG21K, CHOLESTEROL,
TITLE 2 AND NBSMO8
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SMOOTHENED HOMOLOG;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: SMO;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: NBSMO8;
COMPND 8 CHAIN: B;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: SMO, SMOH;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 GNTI-;
SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVLAD6;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: LAMA GLAMA;
SOURCE 14 ORGANISM_TAXID: 9844
KEYWDS GPCR, SIGNALING, HEDGEHOG, SMOOTHENED, CHOLESTEROL, SAG, SIGNALING
KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR I.S.DESHPANDE,J.LIANG,D.HEDEEN,K.J.ROBERTS,Y.ZHANG,B.HA,
AUTHOR 2 N.R.LATORRACA,B.FAUST,R.O.DROR,P.A.BEACHY,B.R.MYERS,A.MANGLIK
REVDAT 6 23-OCT-24 6O3C 1 REMARK
REVDAT 5 11-OCT-23 6O3C 1 HETSYN
REVDAT 4 29-JUL-20 6O3C 1 COMPND REMARK HETNAM LINK
REVDAT 4 2 1 SITE
REVDAT 3 24-JUL-19 6O3C 1 JRNL
REVDAT 2 17-JUL-19 6O3C 1 JRNL
REVDAT 1 03-JUL-19 6O3C 0
JRNL AUTH I.DESHPANDE,J.LIANG,D.HEDEEN,K.J.ROBERTS,Y.ZHANG,B.HA,
JRNL AUTH 2 N.R.LATORRACA,B.FAUST,R.O.DROR,P.A.BEACHY,B.R.MYERS,
JRNL AUTH 3 A.MANGLIK
JRNL TITL SMOOTHENED STIMULATION BY MEMBRANE STEROLS DRIVES HEDGEHOG
JRNL TITL 2 PATHWAY ACTIVITY.
JRNL REF NATURE V. 571 284 2019
JRNL REFN ESSN 1476-4687
JRNL PMID 31263273
JRNL DOI 10.1038/S41586-019-1355-4
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.12_2829
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.94
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 3 NUMBER OF REFLECTIONS : 18441
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.248
REMARK 3 R VALUE (WORKING SET) : 0.245
REMARK 3 FREE R VALUE : 0.294
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 926
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 47.9502 - 5.3542 0.95 2657 139 0.2352 0.2391
REMARK 3 2 5.3542 - 4.2506 0.97 2538 134 0.2129 0.2738
REMARK 3 3 4.2506 - 3.7135 0.97 2542 134 0.2262 0.3240
REMARK 3 4 3.7135 - 3.3741 0.98 2514 132 0.2672 0.3257
REMARK 3 5 3.3741 - 3.1323 0.98 2499 134 0.2826 0.3842
REMARK 3 6 3.1323 - 2.9477 0.94 2383 128 0.3300 0.3747
REMARK 3 7 2.9477 - 2.8001 0.94 2382 125 0.3585 0.3725
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.526
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.400
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 81.36
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.40
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 5043
REMARK 3 ANGLE : 0.579 6865
REMARK 3 CHIRALITY : 0.042 757
REMARK 3 PLANARITY : 0.002 848
REMARK 3 DIHEDRAL : 19.813 1871
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6O3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-19.
REMARK 100 THE DEPOSITION ID IS D_1000239952.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-JAN-19
REMARK 200 TEMPERATURE (KELVIN) : 293.15
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.033
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18464
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 200 DATA REDUNDANCY : 6.630
REMARK 200 R MERGE (I) : 0.27000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.50
REMARK 200 R MERGE FOR SHELL (I) : 1.87000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.920
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5L7D, 3P0G
REMARK 200
REMARK 200 REMARK: SMALL 2X5X10 MICRON BLADES
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.88
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 0.1 M AMMONIUM
REMARK 280 PHOSPHATE DIBASIC, 1.5% 1,2,3-HEPTANETRIOL, 22% PEG 300, LIPIDIC
REMARK 280 CUBIC PHASE, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.50500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.50500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27440 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A 42
REMARK 465 TYR A 43
REMARK 465 LYS A 44
REMARK 465 ASP A 45
REMARK 465 ASP A 46
REMARK 465 ASP A 47
REMARK 465 ASP A 48
REMARK 465 ALA A 49
REMARK 465 GLY A 50
REMARK 465 SER A 51
REMARK 465 GLU A 52
REMARK 465 ASN A 53
REMARK 465 LEU A 54
REMARK 465 TYR A 55
REMARK 465 PHE A 56
REMARK 465 GLN A 57
REMARK 465 GLY A 58
REMARK 465 SER A 59
REMARK 465 GLY A 60
REMARK 465 SER A 61
REMARK 465 PRO A 62
REMARK 465 ARG A 63
REMARK 465 LEU A 64
REMARK 465 LEU A 502
REMARK 465 PRO A 503
REMARK 465 THR A 504
REMARK 465 LYS A 505
REMARK 465 LYS A 506
REMARK 465 PRO A 507
REMARK 465 ILE A 508
REMARK 465 PRO A 509
REMARK 465 THR A 557
REMARK 465 GLY A 558
REMARK 465 HIS A 559
REMARK 465 SER A 560
REMARK 465 ASP A 561
REMARK 465 ASP A 562
REMARK 465 GLU A 563
REMARK 465 PRO A 564
REMARK 465 LYS A 565
REMARK 465 ARG A 566
REMARK 465 HIS B 123
REMARK 465 HIS B 124
REMARK 465 HIS B 125
REMARK 465 HIS B 126
REMARK 465 HIS B 127
REMARK 465 HIS B 128
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LEU A 65 CG CD1 CD2
REMARK 470 HIS A 73 CG ND1 CD2 CE1 NE2
REMARK 470 GLU A 75 CG CD OE1 OE2
REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 139 CG CD OE1 OE2
REMARK 470 GLU A 180 CG CD OE1 OE2
REMARK 470 GLN A 187 CG CD OE1 NE2
REMARK 470 ILE A 189 CG1 CG2 CD1
REMARK 470 ASN A 192 CG OD1 ND2
REMARK 470 GLN A 196 CG CD OE1 NE2
REMARK 470 LYS A 208 CG CD CE NZ
REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 360 CG CD CE NZ
REMARK 470 LYS A 434 CG CD CE NZ
REMARK 470 SER A 435 OG
REMARK 470 ASN A 436 CG OD1 ND2
REMARK 470 LEU A 441 CG CD1 CD2
REMARK 470 GLU A 443 CG CD OE1 OE2
REMARK 470 LYS A 444 CG CD CE NZ
REMARK 470 LYS A 448 CG CD CE NZ
REMARK 470 LYS A 543 CG CD CE NZ
REMARK 470 GLN B 1 CG CD OE1 NE2
REMARK 470 ALA B 24 CB
REMARK 470 SER B 25 OG
REMARK 470 TYR B 27 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 GLU B 44 CG CD OE1 OE2
REMARK 470 ASN B 73 CG OD1 ND2
REMARK 470 LYS B 75 CG CD CE NZ
REMARK 470 SER B 122 OG
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NH2 ARG A 425 O4 PO4 A 601 1.78
REMARK 500 O VAL A 111 OG SER A 114 2.14
REMARK 500 NH1 ARG A 78 OE2 GLU A 104 2.16
REMARK 500 NH1 ARG A 121 OE1 GLU A 215 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 NH1 ARG A 402 O2 PO4 A 601 4555 1.42
REMARK 500 CD1 ILE A 417 C10 OLB A 605 4555 1.49
REMARK 500 CD1 ILE A 417 C11 OLB A 605 4555 1.67
REMARK 500 CZ ARG A 402 O2 PO4 A 601 4555 1.97
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 119 73.63 63.48
REMARK 500 ARG A 165 -38.21 -142.89
REMARK 500 CYS A 173 95.91 -69.82
REMARK 500 ASP A 213 40.09 35.29
REMARK 500 ASN A 264 43.13 -77.21
REMARK 500 THR A 311 -161.26 -119.17
REMARK 500 VAL A 408 -59.88 -136.22
REMARK 500 GLU A 443 -122.97 59.98
REMARK 500 SER B 31 9.11 -66.28
REMARK 500 VAL B 48 -79.31 -115.45
REMARK 500 LEU B 101 36.32 -95.83
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLB A 603
REMARK 610 OLB A 604
REMARK 610 OLB A 606
REMARK 610 OLB A 607
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A 602 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 THR A 94 O
REMARK 620 2 ALA A 97 O 75.6
REMARK 620 3 SER A 100 O 98.2 69.4
REMARK 620 4 ASP A 101 OD1 140.3 133.3 75.3
REMARK 620 N 1 2 3
DBREF 6O3C A 64 566 UNP P56726 SMO_MOUSE 64 566
DBREF 6O3C B 1 128 PDB 6O3C 6O3C 1 128
SEQADV 6O3C ASP A 42 UNP P56726 EXPRESSION TAG
SEQADV 6O3C TYR A 43 UNP P56726 EXPRESSION TAG
SEQADV 6O3C LYS A 44 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ASP A 45 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ASP A 46 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ASP A 47 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ASP A 48 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ALA A 49 UNP P56726 EXPRESSION TAG
SEQADV 6O3C GLY A 50 UNP P56726 EXPRESSION TAG
SEQADV 6O3C SER A 51 UNP P56726 EXPRESSION TAG
SEQADV 6O3C GLU A 52 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ASN A 53 UNP P56726 EXPRESSION TAG
SEQADV 6O3C LEU A 54 UNP P56726 EXPRESSION TAG
SEQADV 6O3C TYR A 55 UNP P56726 EXPRESSION TAG
SEQADV 6O3C PHE A 56 UNP P56726 EXPRESSION TAG
SEQADV 6O3C GLN A 57 UNP P56726 EXPRESSION TAG
SEQADV 6O3C GLY A 58 UNP P56726 EXPRESSION TAG
SEQADV 6O3C SER A 59 UNP P56726 EXPRESSION TAG
SEQADV 6O3C GLY A 60 UNP P56726 EXPRESSION TAG
SEQADV 6O3C SER A 61 UNP P56726 EXPRESSION TAG
SEQADV 6O3C PRO A 62 UNP P56726 EXPRESSION TAG
SEQADV 6O3C ARG A 63 UNP P56726 EXPRESSION TAG
SEQRES 1 A 525 ASP TYR LYS ASP ASP ASP ASP ALA GLY SER GLU ASN LEU
SEQRES 2 A 525 TYR PHE GLN GLY SER GLY SER PRO ARG LEU LEU SER HIS
SEQRES 3 A 525 CYS GLY ARG ALA ALA HIS CYS GLU PRO LEU ARG TYR ASN
SEQRES 4 A 525 VAL CYS LEU GLY SER ALA LEU PRO TYR GLY ALA THR THR
SEQRES 5 A 525 THR LEU LEU ALA GLY ASP SER ASP SER GLN GLU GLU ALA
SEQRES 6 A 525 HIS GLY LYS LEU VAL LEU TRP SER GLY LEU ARG ASN ALA
SEQRES 7 A 525 PRO ARG CYS TRP ALA VAL ILE GLN PRO LEU LEU CYS ALA
SEQRES 8 A 525 VAL TYR MET PRO LYS CYS GLU ASN ASP ARG VAL GLU LEU
SEQRES 9 A 525 PRO SER ARG THR LEU CYS GLN ALA THR ARG GLY PRO CYS
SEQRES 10 A 525 ALA ILE VAL GLU ARG GLU ARG GLY TRP PRO ASP PHE LEU
SEQRES 11 A 525 ARG CYS THR PRO ASP HIS PHE PRO GLU GLY CYS PRO ASN
SEQRES 12 A 525 GLU VAL GLN ASN ILE LYS PHE ASN SER SER GLY GLN CYS
SEQRES 13 A 525 GLU ALA PRO LEU VAL ARG THR ASP ASN PRO LYS SER TRP
SEQRES 14 A 525 TYR GLU ASP VAL GLU GLY CYS GLY ILE GLN CYS GLN ASN
SEQRES 15 A 525 PRO LEU PHE THR GLU ALA GLU HIS GLN ASP MET HIS SER
SEQRES 16 A 525 TYR ILE ALA ALA PHE GLY ALA VAL THR GLY LEU CYS THR
SEQRES 17 A 525 LEU PHE THR LEU ALA THR PHE VAL ALA ASP TRP ARG ASN
SEQRES 18 A 525 SER ASN ARG TYR PRO ALA VAL ILE LEU PHE TYR VAL ASN
SEQRES 19 A 525 ALA CYS PHE PHE VAL GLY SER ILE GLY TRP LEU ALA GLN
SEQRES 20 A 525 PHE MET ASP GLY ALA ARG ARG GLU ILE VAL CYS ARG ALA
SEQRES 21 A 525 ASP GLY THR MET ARG PHE GLY GLU PRO THR SER SER GLU
SEQRES 22 A 525 THR LEU SER CYS VAL ILE ILE PHE VAL ILE VAL TYR TYR
SEQRES 23 A 525 ALA LEU MET ALA GLY VAL VAL TRP PHE VAL VAL LEU THR
SEQRES 24 A 525 TYR ALA TRP HIS THR SER PHE LYS ALA LEU GLY THR THR
SEQRES 25 A 525 TYR GLN PRO LEU SER GLY LYS THR SER TYR PHE HIS LEU
SEQRES 26 A 525 LEU THR TRP SER LEU PRO PHE VAL LEU THR VAL ALA ILE
SEQRES 27 A 525 LEU ALA VAL ALA GLN VAL ASP GLY ASP SER VAL SER GLY
SEQRES 28 A 525 ILE CYS PHE VAL GLY TYR LYS ASN TYR ARG TYR ARG ALA
SEQRES 29 A 525 GLY PHE VAL LEU ALA PRO ILE GLY LEU VAL LEU ILE VAL
SEQRES 30 A 525 GLY GLY TYR PHE LEU ILE ARG GLY VAL MET THR LEU PHE
SEQRES 31 A 525 SER ILE LYS SER ASN HIS PRO GLY LEU LEU SER GLU LYS
SEQRES 32 A 525 ALA ALA SER LYS ILE ASN GLU THR MET LEU ARG LEU GLY
SEQRES 33 A 525 ILE PHE GLY PHE LEU ALA PHE GLY PHE VAL LEU ILE THR
SEQRES 34 A 525 PHE SER CYS HIS PHE TYR ASP PHE PHE ASN GLN ALA GLU
SEQRES 35 A 525 TRP GLU ARG SER PHE ARG ASP TYR VAL LEU CYS GLN ALA
SEQRES 36 A 525 ASN VAL THR ILE GLY LEU PRO THR LYS LYS PRO ILE PRO
SEQRES 37 A 525 ASP CYS GLU ILE LYS ASN ARG PRO SER LEU LEU VAL GLU
SEQRES 38 A 525 LYS ILE ASN LEU PHE ALA MET PHE GLY THR GLY ILE ALA
SEQRES 39 A 525 MET SER THR TRP VAL TRP THR LYS ALA THR LEU LEU ILE
SEQRES 40 A 525 TRP ARG ARG THR TRP CYS ARG LEU THR GLY HIS SER ASP
SEQRES 41 A 525 ASP GLU PRO LYS ARG
SEQRES 1 B 128 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN
SEQRES 2 B 128 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY
SEQRES 3 B 128 TYR ILE PHE SER SER TYR ALA MET GLY TRP TYR ARG GLN
SEQRES 4 B 128 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA THR ILE GLY
SEQRES 5 B 128 TRP GLY THR ILE THR TYR TYR ALA ASP SER VAL LYS GLY
SEQRES 6 B 128 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL
SEQRES 7 B 128 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA
SEQRES 8 B 128 VAL TYR TYR CYS ALA ALA GLN ASP LEU LEU TYR TYR SER
SEQRES 9 B 128 PHE PRO GLY ASP HIS ALA TYR TRP GLY GLN GLY THR GLN
SEQRES 10 B 128 VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS
HET PO4 A 601 5
HET NA A 602 1
HET OLB A 603 18
HET OLB A 604 19
HET OLB A 605 25
HET OLB A 606 19
HET OLB A 607 17
HET OLB A 608 25
HET NAG A 609 14
HET NAG A 610 14
HET LKD A 611 38
HET CLR A 612 28
HET CLR A 613 28
HETNAM PO4 PHOSPHATE ION
HETNAM NA SODIUM ION
HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM LKD 3-CHLORO-4,7-DIFLUORO-N-{[2-METHOXY-5-(PYRIDIN-4-YL)
HETNAM 2 LKD PHENYL]METHYL}-N-[TRANS-4-(METHYLAMINO)CYCLOHEXYL]-1-
HETNAM 3 LKD BENZOTHIOPHENE-2-CARBOXAMIDE
HETNAM CLR CHOLESTEROL
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 3 PO4 O4 P 3-
FORMUL 4 NA NA 1+
FORMUL 5 OLB 6(C21 H40 O4)
FORMUL 11 NAG 2(C8 H15 N O6)
FORMUL 13 LKD C29 H28 CL F2 N3 O2 S
FORMUL 14 CLR 2(C27 H46 O)
FORMUL 16 HOH *3(H2 O)
HELIX 1 AA1 SER A 102 SER A 114 1 13
HELIX 2 AA2 GLY A 115 ASN A 118 5 4
HELIX 3 AA3 ALA A 119 TYR A 134 1 16
HELIX 4 AA4 SER A 147 ALA A 153 1 7
HELIX 5 AA5 CYS A 158 ARG A 165 1 8
HELIX 6 AA6 PRO A 168 ARG A 172 5 5
HELIX 7 AA7 ASN A 184 ILE A 189 5 6
HELIX 8 AA8 ASN A 206 TRP A 210 5 5
HELIX 9 AA9 THR A 227 ASP A 259 1 33
HELIX 10 AB1 ASP A 259 ASN A 264 1 6
HELIX 11 AB2 ARG A 265 ALA A 287 1 23
HELIX 12 AB3 GLN A 288 MET A 290 5 3
HELIX 13 AB4 GLY A 292 CYS A 299 1 8
HELIX 14 AB5 LEU A 316 ALA A 349 1 34
HELIX 15 AB6 LYS A 360 TRP A 369 1 10
HELIX 16 AB7 SER A 370 ALA A 383 1 14
HELIX 17 AB8 ARG A 402 PHE A 407 1 6
HELIX 18 AB9 VAL A 408 HIS A 437 1 30
HELIX 19 AC1 GLU A 443 THR A 499 1 57
HELIX 20 AC2 SER A 518 THR A 538 1 21
HELIX 21 AC3 TRP A 539 TRP A 541 5 3
HELIX 22 AC4 THR A 542 ARG A 555 1 14
HELIX 23 AC5 LYS B 86 THR B 90 5 5
SHEET 1 AA1 2 GLY A 69 ALA A 71 0
SHEET 2 AA1 2 ARG A 142 GLU A 144 -1 O VAL A 143 N ARG A 70
SHEET 1 AA2 2 GLU A 75 PRO A 76 0
SHEET 2 AA2 2 ALA A 91 THR A 92 -1 O THR A 92 N GLU A 75
SHEET 1 AA3 2 VAL A 81 CYS A 82 0
SHEET 2 AA3 2 SER A 85 ALA A 86 -1 O SER A 85 N CYS A 82
SHEET 1 AA4 2 LEU A 201 ARG A 203 0
SHEET 2 AA4 2 CYS A 217 ILE A 219 -1 O GLY A 218 N VAL A 202
SHEET 1 AA5 2 VAL A 385 GLY A 387 0
SHEET 2 AA5 2 CYS A 394 VAL A 396 -1 O PHE A 395 N ASP A 386
SHEET 1 AA6 4 GLN B 3 SER B 7 0
SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3
SHEET 3 AA6 4 THR B 77 MET B 82 -1 O LEU B 80 N LEU B 20
SHEET 4 AA6 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81
SHEET 1 AA7 6 GLY B 10 GLN B 13 0
SHEET 2 AA7 6 THR B 116 SER B 121 1 O SER B 121 N VAL B 12
SHEET 3 AA7 6 ALA B 91 GLN B 98 -1 N TYR B 93 O THR B 116
SHEET 4 AA7 6 ALA B 33 GLN B 39 -1 N TYR B 37 O TYR B 94
SHEET 5 AA7 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38
SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O TYR B 58 N THR B 50
SHEET 1 AA8 4 GLY B 10 GLN B 13 0
SHEET 2 AA8 4 THR B 116 SER B 121 1 O SER B 121 N VAL B 12
SHEET 3 AA8 4 ALA B 91 GLN B 98 -1 N TYR B 93 O THR B 116
SHEET 4 AA8 4 ALA B 110 TRP B 112 -1 O TYR B 111 N ALA B 97
SSBOND 1 CYS A 68 CYS A 182 1555 1555 2.03
SSBOND 2 CYS A 74 CYS A 138 1555 1555 2.03
SSBOND 3 CYS A 82 CYS A 131 1555 1555 2.03
SSBOND 4 CYS A 122 CYS A 158 1555 1555 2.03
SSBOND 5 CYS A 151 CYS A 173 1555 1555 2.02
SSBOND 6 CYS A 197 CYS A 217 1555 1555 2.03
SSBOND 7 CYS A 221 CYS A 299 1555 1555 2.03
SSBOND 8 CYS A 318 CYS A 394 1555 1555 2.03
SSBOND 9 CYS A 494 CYS A 511 1555 1555 2.03
SSBOND 10 CYS B 22 CYS B 95 1555 1555 2.03
LINK ND2 ASN A 80 C1 NAG A 609 1555 1555 1.44
LINK ND2 ASN A 497 C1 NAG A 610 1555 1555 1.44
LINK O THR A 94 NA NA A 602 1555 1555 2.52
LINK O ALA A 97 NA NA A 602 1555 1555 2.57
LINK O SER A 100 NA NA A 602 1555 1555 2.44
LINK OD1 ASP A 101 NA NA A 602 1555 1555 3.02
CISPEP 1 GLU A 309 PRO A 310 0 1.07
CRYST1 39.010 121.090 157.010 90.00 90.00 90.00 P 2 2 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025634 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008258 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006369 0.00000