HEADER IMMUNE SYSTEM 26-FEB-19 6O3L TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE HUMAN HIV-1 NEUTRALIZING TITLE 2 ANTIBODY PGZL1.H4K3 IN COMPLEX WITH ITS MPER PEPTIDE EPITOPE (REGION TITLE 3 671-683 OF HIV-1 GP41). COMPND MOL_ID: 1; COMPND 2 MOLECULE: PGZL1.H4K3 LIGHT CHAIN; COMPND 3 CHAIN: L, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PGZL1.H4K3 HEAVY CHAIN; COMPND 7 CHAIN: H, A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MPER PEPTIDE, REGION 671-683 OF HIV-1 GP41; COMPND 11 CHAIN: D, E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: EXPI 293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: EXPI 293F; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676 KEYWDS PGZL1 ANTI HIV-1, GP41 MPER, MEMBRANE LIPIDS, BROADLY NEUTRALISING KEYWDS 2 HIV-1 ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,I.A.WILSON REVDAT 3 11-OCT-23 6O3L 1 REMARK REVDAT 2 11-DEC-19 6O3L 1 JRNL REVDAT 1 04-DEC-19 6O3L 0 JRNL AUTH L.ZHANG,A.IRIMIA,L.HE,E.LANDAIS,K.RANTALAINEN,D.P.LEAMAN, JRNL AUTH 2 T.VOLLBRECHT,A.STANO,D.I.SANDS,A.S.KIM,P.POIGNARD, JRNL AUTH 3 D.R.BURTON,B.MURRELL,A.B.WARD,J.ZHU,I.A.WILSON,M.B.ZWICK JRNL TITL AN MPER ANTIBODY NEUTRALIZES HIV-1 USING GERMLINE FEATURES JRNL TITL 2 SHARED AMONG DONORS. JRNL REF NAT COMMUN V. 10 5389 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31772165 JRNL DOI 10.1038/S41467-019-12973-1 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 72539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1598 - 5.8568 0.92 2672 139 0.1719 0.1880 REMARK 3 2 5.8568 - 4.6518 0.89 2585 136 0.1349 0.1459 REMARK 3 3 4.6518 - 4.0647 0.94 2727 146 0.1268 0.1510 REMARK 3 4 4.0647 - 3.6935 0.95 2745 142 0.1554 0.1983 REMARK 3 5 3.6935 - 3.4290 0.88 2539 134 0.1674 0.2072 REMARK 3 6 3.4290 - 3.2269 0.94 2686 142 0.1841 0.2260 REMARK 3 7 3.2269 - 3.0654 0.95 2737 138 0.1925 0.2265 REMARK 3 8 3.0654 - 2.9320 0.95 2770 154 0.1967 0.2303 REMARK 3 9 2.9320 - 2.8192 0.94 2736 140 0.1960 0.2334 REMARK 3 10 2.8192 - 2.7220 0.89 2588 140 0.1858 0.2390 REMARK 3 11 2.7220 - 2.6369 0.93 2601 145 0.1905 0.2384 REMARK 3 12 2.6369 - 2.5615 0.94 2772 141 0.1872 0.2207 REMARK 3 13 2.5615 - 2.4941 0.95 2731 149 0.1816 0.2318 REMARK 3 14 2.4941 - 2.4333 0.95 2776 132 0.1782 0.2487 REMARK 3 15 2.4333 - 2.3780 0.95 2770 158 0.1861 0.2577 REMARK 3 16 2.3780 - 2.3274 0.95 2708 137 0.1849 0.2685 REMARK 3 17 2.3274 - 2.2808 0.85 2496 125 0.1864 0.2681 REMARK 3 18 2.2808 - 2.2378 0.89 2520 143 0.1757 0.2296 REMARK 3 19 2.2378 - 2.1978 0.90 2639 149 0.1698 0.2121 REMARK 3 20 2.1978 - 2.1606 0.92 2677 119 0.1704 0.2457 REMARK 3 21 2.1606 - 2.1257 0.92 2659 133 0.1732 0.2399 REMARK 3 22 2.1257 - 2.0930 0.92 2667 150 0.1786 0.2828 REMARK 3 23 2.0930 - 2.0622 0.92 2669 138 0.1810 0.2016 REMARK 3 24 2.0622 - 2.0332 0.92 2656 145 0.1824 0.2393 REMARK 3 25 2.0332 - 2.0057 0.91 2687 126 0.1795 0.2354 REMARK 3 26 2.0057 - 1.9800 0.75 2109 116 0.1898 0.2463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7351 REMARK 3 ANGLE : 0.925 10040 REMARK 3 CHIRALITY : 0.058 1107 REMARK 3 PLANARITY : 0.006 1283 REMARK 3 DIHEDRAL : 15.985 4407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.6817 -33.4726 -1.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.1779 REMARK 3 T33: 0.2411 T12: -0.0194 REMARK 3 T13: 0.0126 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.8246 L22: 2.2481 REMARK 3 L33: 1.9915 L12: 0.8051 REMARK 3 L13: 1.3255 L23: 1.9921 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: -0.1878 S13: 0.1087 REMARK 3 S21: 0.3468 S22: -0.2932 S23: 0.1833 REMARK 3 S31: 0.3909 S32: -0.3300 S33: 0.2355 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.8962 -37.4326 -7.0596 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.1599 REMARK 3 T33: 0.2123 T12: -0.0425 REMARK 3 T13: 0.0071 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.0079 L22: 1.2431 REMARK 3 L33: 2.4879 L12: -0.3545 REMARK 3 L13: 0.0481 L23: 0.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0533 S13: -0.0689 REMARK 3 S21: 0.2878 S22: -0.0922 S23: 0.0672 REMARK 3 S31: 0.1485 S32: -0.0807 S33: 0.0520 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 103 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.1987 -22.1310 8.2433 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2344 REMARK 3 T33: 0.2076 T12: -0.0662 REMARK 3 T13: 0.0076 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.7143 L22: 3.0896 REMARK 3 L33: 4.3934 L12: -1.5102 REMARK 3 L13: -0.9582 L23: 2.6680 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: 0.0020 S13: -0.2835 REMARK 3 S21: 0.0983 S22: 0.0419 S23: 0.0824 REMARK 3 S31: 0.5357 S32: -0.3198 S33: 0.0857 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.1432 -4.7776 0.9094 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.2420 REMARK 3 T33: 0.1832 T12: 0.0165 REMARK 3 T13: -0.0049 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6456 L22: 3.0059 REMARK 3 L33: 2.4807 L12: -0.1573 REMARK 3 L13: -0.4407 L23: -1.1923 REMARK 3 S TENSOR REMARK 3 S11: 0.1406 S12: 0.1548 S13: 0.1585 REMARK 3 S21: -0.1794 S22: -0.0240 S23: 0.1611 REMARK 3 S31: -0.0954 S32: -0.3501 S33: -0.1176 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.9412 2.3782 1.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.2972 REMARK 3 T33: 0.3550 T12: 0.1512 REMARK 3 T13: 0.0684 T23: 0.1095 REMARK 3 L TENSOR REMARK 3 L11: 0.6255 L22: 3.0821 REMARK 3 L33: 2.3818 L12: -0.4398 REMARK 3 L13: 0.7867 L23: -1.3364 REMARK 3 S TENSOR REMARK 3 S11: 0.2139 S12: 0.0837 S13: 0.2932 REMARK 3 S21: 0.1021 S22: -0.0654 S23: 0.4399 REMARK 3 S31: -0.4468 S32: -0.4781 S33: -0.1678 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2525 -24.3056 -23.3267 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.2060 REMARK 3 T33: 0.2040 T12: -0.0150 REMARK 3 T13: 0.0086 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.4222 L22: 2.3511 REMARK 3 L33: 1.5687 L12: -0.4160 REMARK 3 L13: -0.0934 L23: 0.2614 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: -0.0515 S13: 0.0487 REMARK 3 S21: -0.0087 S22: -0.1339 S23: -0.3998 REMARK 3 S31: 0.0444 S32: 0.0896 S33: 0.1011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 33 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.5197 -29.7870 -25.4501 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.1749 REMARK 3 T33: 0.1881 T12: -0.0180 REMARK 3 T13: -0.0176 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.5459 L22: 3.6728 REMARK 3 L33: 4.1235 L12: -0.7398 REMARK 3 L13: -0.0155 L23: 0.3811 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: 0.1836 S13: 0.0517 REMARK 3 S21: 0.0023 S22: -0.0749 S23: 0.0728 REMARK 3 S31: 0.0999 S32: -0.2292 S33: 0.0599 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 76 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5435 -29.4888 -19.8804 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.2178 REMARK 3 T33: 0.1788 T12: -0.0017 REMARK 3 T13: 0.0027 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.1998 L22: 2.1443 REMARK 3 L33: 2.2232 L12: -0.1498 REMARK 3 L13: 0.4317 L23: 0.4284 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: 0.1427 S13: -0.0816 REMARK 3 S21: 0.0303 S22: -0.1190 S23: -0.1512 REMARK 3 S31: 0.1506 S32: 0.2087 S33: -0.0115 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2352 -2.2155 -3.7038 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1777 REMARK 3 T33: 0.2287 T12: -0.0272 REMARK 3 T13: 0.0037 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.6592 L22: 2.7323 REMARK 3 L33: 4.9283 L12: -0.0096 REMARK 3 L13: -0.2217 L23: -0.0626 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.1343 S13: 0.0950 REMARK 3 S21: 0.0271 S22: -0.0532 S23: -0.1481 REMARK 3 S31: -0.1052 S32: 0.1005 S33: 0.0213 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 486 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1678 1.9056 1.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.2584 REMARK 3 T33: 0.2935 T12: -0.0637 REMARK 3 T13: -0.0476 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.0113 L22: 3.2619 REMARK 3 L33: 4.6706 L12: 0.7951 REMARK 3 L13: 0.0397 L23: -0.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: -0.3284 S13: 0.1976 REMARK 3 S21: 0.3564 S22: -0.1095 S23: -0.2469 REMARK 3 S31: -0.4519 S32: 0.3753 S33: -0.0220 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.8750 -19.0750 33.6958 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.3022 REMARK 3 T33: 0.2455 T12: -0.0750 REMARK 3 T13: -0.0401 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 1.8156 L22: 1.9989 REMARK 3 L33: 4.0520 L12: 0.3429 REMARK 3 L13: -1.5649 L23: -0.9828 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: 0.0163 S13: -0.1279 REMARK 3 S21: 0.0191 S22: -0.0168 S23: 0.1470 REMARK 3 S31: -0.1490 S32: 0.3128 S33: 0.0870 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.6182 -9.5430 39.0932 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.2744 REMARK 3 T33: 0.2174 T12: 0.0162 REMARK 3 T13: -0.0256 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.4948 L22: 1.2941 REMARK 3 L33: 2.1127 L12: 0.0548 REMARK 3 L13: 0.1269 L23: 0.3133 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.0831 S13: 0.0798 REMARK 3 S21: -0.0323 S22: -0.0154 S23: 0.1852 REMARK 3 S31: -0.0353 S32: -0.2541 S33: 0.0278 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7958 -12.6110 37.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.3039 REMARK 3 T33: 0.2767 T12: 0.0076 REMARK 3 T13: -0.0150 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.8797 L22: 1.4751 REMARK 3 L33: 3.5014 L12: 0.2225 REMARK 3 L13: -0.4988 L23: 0.4577 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: 0.0882 S13: 0.0822 REMARK 3 S21: -0.1178 S22: -0.0213 S23: 0.0473 REMARK 3 S31: -0.1396 S32: -0.1123 S33: -0.0475 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.3119 -22.1415 21.5120 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2979 REMARK 3 T33: 0.2491 T12: -0.0494 REMARK 3 T13: -0.0388 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.8515 L22: 1.5008 REMARK 3 L33: 8.9657 L12: -1.6691 REMARK 3 L13: -4.0752 L23: 3.6824 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.0600 S13: 0.2333 REMARK 3 S21: 0.0795 S22: 0.2599 S23: -0.0175 REMARK 3 S31: 0.4364 S32: -0.3101 S33: -0.2263 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6298 -32.2090 23.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.3305 T22: 0.2814 REMARK 3 T33: 0.2233 T12: 0.0756 REMARK 3 T13: -0.0495 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.8600 L22: 2.3712 REMARK 3 L33: 3.1394 L12: -0.5738 REMARK 3 L13: 1.2863 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.1701 S13: -0.0835 REMARK 3 S21: 0.2552 S22: 0.2751 S23: -0.3440 REMARK 3 S31: 0.4937 S32: 0.4058 S33: -0.2726 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8990 -29.4390 25.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.2905 T22: 0.2257 REMARK 3 T33: 0.1465 T12: -0.0259 REMARK 3 T13: 0.0099 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 4.0860 L22: 3.7102 REMARK 3 L33: 2.7752 L12: -2.1940 REMARK 3 L13: 1.5011 L23: -0.1493 REMARK 3 S TENSOR REMARK 3 S11: -0.2269 S12: -0.3078 S13: -0.0206 REMARK 3 S21: 0.4166 S22: 0.2947 S23: -0.0123 REMARK 3 S31: 0.4002 S32: -0.1575 S33: -0.0053 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2023 -38.8749 21.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.2790 REMARK 3 T33: 0.3004 T12: 0.1228 REMARK 3 T13: -0.0683 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.6780 L22: 1.7089 REMARK 3 L33: 2.3654 L12: -0.1709 REMARK 3 L13: 0.8212 L23: -0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.0643 S13: -0.4954 REMARK 3 S21: 0.1256 S22: 0.1766 S23: -0.2234 REMARK 3 S31: 0.7202 S32: 0.4031 S33: -0.2437 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2375 -4.0990 50.7753 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.2241 REMARK 3 T33: 0.2424 T12: -0.0403 REMARK 3 T13: -0.0300 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.4472 L22: 2.6564 REMARK 3 L33: 2.2641 L12: -1.3285 REMARK 3 L13: 0.2517 L23: -0.1117 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.0347 S13: 0.4758 REMARK 3 S21: 0.0575 S22: -0.0525 S23: -0.1922 REMARK 3 S31: -0.1204 S32: 0.1127 S33: 0.0731 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1666 -11.1909 53.9303 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.2617 REMARK 3 T33: 0.1565 T12: -0.0259 REMARK 3 T13: -0.0094 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.0087 L22: 3.3602 REMARK 3 L33: 3.0176 L12: -1.0316 REMARK 3 L13: -0.2228 L23: 1.0311 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: -0.3036 S13: -0.2479 REMARK 3 S21: 0.1148 S22: -0.1736 S23: 0.2211 REMARK 3 S31: 0.2323 S32: -0.2251 S33: 0.1569 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0246 -1.9897 57.2166 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.2847 REMARK 3 T33: 0.2254 T12: -0.0144 REMARK 3 T13: -0.0419 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 4.2136 L22: 7.2453 REMARK 3 L33: 2.8162 L12: -0.4053 REMARK 3 L13: -0.0471 L23: -0.0083 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.3536 S13: 0.4298 REMARK 3 S21: 0.8270 S22: 0.0825 S23: -0.2180 REMARK 3 S31: -0.1795 S32: 0.2075 S33: 0.0572 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.5427 -6.1313 47.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.1920 T22: 0.2438 REMARK 3 T33: 0.2022 T12: -0.0000 REMARK 3 T13: -0.0098 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.2697 L22: 1.7115 REMARK 3 L33: 2.1229 L12: -0.1090 REMARK 3 L13: -0.3583 L23: 0.2885 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: 0.0139 S13: 0.3812 REMARK 3 S21: -0.0832 S22: -0.1760 S23: -0.0181 REMARK 3 S31: -0.1696 S32: -0.1771 S33: 0.0434 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3723 -24.1493 29.5890 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.3991 REMARK 3 T33: 0.2954 T12: 0.0424 REMARK 3 T13: 0.0033 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.7455 L22: 1.5605 REMARK 3 L33: 1.0840 L12: -0.2271 REMARK 3 L13: -0.4828 L23: -0.2487 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.2484 S13: -0.1289 REMARK 3 S21: -0.1541 S22: 0.0755 S23: -0.1193 REMARK 3 S31: 0.4947 S32: 0.5279 S33: -0.0779 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2301 -19.1682 25.8068 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.3123 REMARK 3 T33: 0.2188 T12: -0.0197 REMARK 3 T13: 0.0121 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.2075 L22: 1.0365 REMARK 3 L33: 4.1108 L12: 0.0120 REMARK 3 L13: 0.5960 L23: 0.0206 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.2361 S13: 0.1359 REMARK 3 S21: -0.1507 S22: 0.1441 S23: -0.1022 REMARK 3 S31: 0.0307 S32: 0.4962 S33: -0.0789 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 671 THROUGH 686 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2701 -49.0957 -25.6448 REMARK 3 T TENSOR REMARK 3 T11: 0.4598 T22: 0.2291 REMARK 3 T33: 0.3515 T12: 0.0493 REMARK 3 T13: -0.0414 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 4.1080 L22: 4.7548 REMARK 3 L33: 4.0738 L12: -0.8818 REMARK 3 L13: -1.0414 L23: 1.1894 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.3367 S13: -0.8868 REMARK 3 S21: -0.0254 S22: -0.2356 S23: 0.1450 REMARK 3 S31: 0.5741 S32: 0.2975 S33: 0.1707 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 671 THROUGH 686 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.5166 4.5957 57.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.3988 REMARK 3 T33: 0.3224 T12: 0.0391 REMARK 3 T13: 0.0082 T23: -0.1423 REMARK 3 L TENSOR REMARK 3 L11: 3.6100 L22: 1.9395 REMARK 3 L33: 6.0711 L12: 0.4452 REMARK 3 L13: 0.6725 L23: -0.3690 REMARK 3 S TENSOR REMARK 3 S11: -0.1792 S12: 0.1504 S13: -0.1409 REMARK 3 S21: 0.2925 S22: 0.0402 S23: 0.8451 REMARK 3 S31: -0.3833 S32: -0.3902 S33: 0.1410 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.10 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 36.154 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6O3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM DIHYDROGEN PHOSPHATE, REMARK 280 22% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 214 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 465 CYS B 214 REMARK 465 SER A 130 REMARK 465 LYS A 131 REMARK 465 SER A 132 REMARK 465 THR A 133 REMARK 465 CYS A 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS L 194 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU H 187 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 CYS H 208 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 CYS A 92 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 CYS A 208 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 51 -48.27 70.34 REMARK 500 GLU L 68 -101.77 58.37 REMARK 500 ARG H 100E -53.68 72.10 REMARK 500 THR B 51 -46.84 75.00 REMARK 500 SER B 67 -144.81 -88.61 REMARK 500 ALA B 84 -175.52 -171.53 REMARK 500 SER B 127 -83.54 -80.52 REMARK 500 ARG A 100E -52.26 69.99 REMARK 500 LYS E 685 -110.52 -141.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6O3D RELATED DB: PDB REMARK 900 6O3D CONTAINS THE APO STRUCTURE OF THE PGZL1 FAB REMARK 900 RELATED ID: 6O3G RELATED DB: PDB REMARK 900 6O3G CONTAINS THE MPER BOUND STRUCTURE OF THE PGZL1 FAB REMARK 900 RELATED ID: 6O3J RELATED DB: PDB REMARK 900 6O3J CONTAINS THE MPER AND 06:0 PA BOUND STRUCTURE OF THE PGZL1 FAB REMARK 900 RELATED ID: 6O3K RELATED DB: PDB REMARK 900 6O3K CONTAINS THE APO STRUCTURE OF THE PGZL1.H4K3 FAB REMARK 900 RELATED ID: 6O3U RELATED DB: PDB REMARK 900 6O3U CONTAINS THE STRUCTURE OF THE PGZL1.H4K3 FAB BOUND TO MPER REMARK 900 PEPTIDE EPITOPE AND 06:0 PA LIPID REMARK 900 RELATED ID: 6O41 RELATED DB: PDB REMARK 900 6O41 CONTAINS THE APO STRUCTURE OF THE GERMLINE PGZL1 FAB REMARK 900 RELATED ID: 6O42 RELATED DB: PDB REMARK 900 6O42 CONTAINS THE MPER-BOUND STRUCTURE OF THE GERMLINE PGZL1 FAB DBREF 6O3L L 1 214 PDB 6O3L 6O3L 1 214 DBREF 6O3L H 1 230 PDB 6O3L 6O3L 1 230 DBREF 6O3L B 1 214 PDB 6O3L 6O3L 1 214 DBREF 6O3L A 1 230 PDB 6O3L 6O3L 1 230 DBREF 6O3L D 671 686 PDB 6O3L 6O3L 671 686 DBREF 6O3L E 671 686 PDB 6O3L 6O3L 671 686 SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR PHE ALA LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL SER GLY GLY ALA LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS ALA GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY THR SEQRES 5 L 215 SER GLY ARG ALA THR GLY VAL PRO GLY ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLU THR ASP PHE SER LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY THR SER GLN SER THR PHE GLY GLN GLY THR ARG SEQRES 9 L 215 LEU GLU THR ARG ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 227 LYS VAL GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 H 227 PRO TRP SER SER VAL ARG VAL SER CYS LYS ALA SER GLY SEQRES 3 H 227 GLY SER PHE SER SER TYR ALA PHE ASN TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY GLN ARG LEU GLU TRP LEU GLY GLY ILE VAL SEQRES 5 H 227 PRO LEU VAL SER SER THR ASN TYR ALA GLN ARG PHE ARG SEQRES 6 H 227 GLY ARG VAL THR ILE SER ALA ASP ARG SER THR SER THR SEQRES 7 H 227 VAL TYR LEU GLU MET THR GLY LEU THR SER ALA ASP THR SEQRES 8 H 227 ALA VAL TYR PHE CYS ALA ARG GLU GLY GLU GLY TRP PHE SEQRES 9 H 227 GLY ARG PRO LEU ARG ALA PHE GLU PHE TRP GLY GLN GLY SEQRES 10 H 227 THR LEU VAL THR VAL SER THR ALA SER THR LYS GLY PRO SEQRES 11 H 227 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 227 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 227 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 H 227 VAL GLU PRO LYS SER CYS SEQRES 1 B 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR PHE ALA LEU SEQRES 2 B 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 215 GLN SER VAL SER GLY GLY ALA LEU ALA TRP TYR GLN GLN SEQRES 4 B 215 LYS ALA GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY THR SEQRES 5 B 215 SER GLY ARG ALA THR GLY VAL PRO GLY ARG PHE SER GLY SEQRES 6 B 215 SER GLY SER GLU THR ASP PHE SER LEU THR ILE SER ARG SEQRES 7 B 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 B 215 TYR GLY THR SER GLN SER THR PHE GLY GLN GLY THR ARG SEQRES 9 B 215 LEU GLU THR ARG ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 B 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 B 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 B 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 B 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 B 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 B 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 B 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 B 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 227 LYS VAL GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 A 227 PRO TRP SER SER VAL ARG VAL SER CYS LYS ALA SER GLY SEQRES 3 A 227 GLY SER PHE SER SER TYR ALA PHE ASN TRP VAL ARG GLN SEQRES 4 A 227 ALA PRO GLY GLN ARG LEU GLU TRP LEU GLY GLY ILE VAL SEQRES 5 A 227 PRO LEU VAL SER SER THR ASN TYR ALA GLN ARG PHE ARG SEQRES 6 A 227 GLY ARG VAL THR ILE SER ALA ASP ARG SER THR SER THR SEQRES 7 A 227 VAL TYR LEU GLU MET THR GLY LEU THR SER ALA ASP THR SEQRES 8 A 227 ALA VAL TYR PHE CYS ALA ARG GLU GLY GLU GLY TRP PHE SEQRES 9 A 227 GLY ARG PRO LEU ARG ALA PHE GLU PHE TRP GLY GLN GLY SEQRES 10 A 227 THR LEU VAL THR VAL SER THR ALA SER THR LYS GLY PRO SEQRES 11 A 227 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 A 227 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 A 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 A 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 A 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 A 227 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 A 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 A 227 VAL GLU PRO LYS SER CYS SEQRES 1 D 16 ASN TRP PHE ASP ILE THR ASN TRP LEU TRP TYR ILE LYS SEQRES 2 D 16 LYS LYS LYS SEQRES 1 E 16 ASN TRP PHE ASP ILE THR ASN TRP LEU TRP TYR ILE LYS SEQRES 2 E 16 LYS LYS LYS HET GOL L 301 6 HET GOL L 302 6 HET PO4 H 301 5 HET PO4 H 302 5 HET PO4 H 303 5 HET GOL H 304 6 HET PO4 B 301 5 HET PO4 A 301 5 HET PO4 A 302 5 HET GOL A 303 6 HET GOL E 701 6 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 5(C3 H8 O3) FORMUL 9 PO4 6(O4 P 3-) FORMUL 18 HOH *478(H2 O) HELIX 1 AA1 VAL L 28 GLY L 31 5 4 HELIX 2 AA2 GLU L 79 PHE L 83 5 5 HELIX 3 AA3 SER L 121 LYS L 126 1 6 HELIX 4 AA4 LYS L 183 HIS L 189 1 7 HELIX 5 AA5 GLN H 61 ARG H 64 5 4 HELIX 6 AA6 ARG H 73 THR H 75 5 3 HELIX 7 AA7 THR H 83 THR H 87 5 5 HELIX 8 AA8 TRP H 99 GLY H 100A 5 3 HELIX 9 AA9 SER H 163 ALA H 165 5 3 HELIX 10 AB1 SER H 196 LEU H 198 5 3 HELIX 11 AB2 LYS H 213 ASN H 216 5 4 HELIX 12 AB3 VAL B 28 GLY B 31 5 4 HELIX 13 AB4 GLU B 79 PHE B 83 5 5 HELIX 14 AB5 SER B 121 LYS B 126 1 6 HELIX 15 AB6 LYS B 183 LYS B 188 1 6 HELIX 16 AB7 GLN A 61 ARG A 64 5 4 HELIX 17 AB8 THR A 83 THR A 87 5 5 HELIX 18 AB9 TRP A 99 GLY A 100A 5 3 HELIX 19 AC1 SER A 163 ALA A 165 5 3 HELIX 20 AC2 SER A 196 THR A 200 5 5 HELIX 21 AC3 LYS A 213 ASN A 216 5 4 HELIX 22 AC4 ASN D 671 PHE D 673 5 3 HELIX 23 AC5 ASP D 674 LYS D 686 1 13 HELIX 24 AC6 ASN E 671 PHE E 673 5 3 HELIX 25 AC7 ASP E 674 LYS E 684 1 11 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 THR L 10 LEU L 13 0 SHEET 2 AA2 6 THR L 102 THR L 106 1 O GLU L 105 N PHE L 11 SHEET 3 AA2 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA2 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 GLY L 53 ARG L 54 -1 O GLY L 53 N TYR L 49 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 102 THR L 106 1 O GLU L 105 N PHE L 11 SHEET 3 AA3 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 GLN H 3 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 77 MET H 82 -1 O LEU H 80 N VAL H 20 SHEET 4 AA6 4 VAL H 67 ASP H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA7 6 ALA H 88 GLU H 97 -1 N ALA H 88 O VAL H 109 SHEET 4 AA7 6 PHE H 34 GLN H 39 -1 N ASN H 35 O ALA H 93 SHEET 5 AA7 6 LEU H 45 VAL H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 AA7 6 SER H 56 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 AA8 4 GLU H 10 LYS H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA8 4 ALA H 88 GLU H 97 -1 N ALA H 88 O VAL H 109 SHEET 4 AA8 4 PRO H 100C TRP H 103 -1 O PHE H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 AA9 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AA9 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 AB1 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AB1 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 AB2 3 THR H 153 TRP H 157 0 SHEET 2 AB2 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 AB2 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SHEET 1 AB3 4 LEU B 4 SER B 7 0 SHEET 2 AB3 4 ALA B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AB3 4 ASP B 70 ILE B 75 -1 O ILE B 75 N ALA B 19 SHEET 4 AB3 4 PHE B 62 GLY B 66 -1 N SER B 63 O THR B 74 SHEET 1 AB4 6 THR B 10 LEU B 13 0 SHEET 2 AB4 6 THR B 102 THR B 106 1 O GLU B 105 N PHE B 11 SHEET 3 AB4 6 VAL B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AB4 6 LEU B 33 GLN B 38 -1 N ALA B 34 O GLN B 89 SHEET 5 AB4 6 ARG B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AB4 6 GLY B 53 ARG B 54 -1 O GLY B 53 N TYR B 49 SHEET 1 AB5 4 THR B 10 LEU B 13 0 SHEET 2 AB5 4 THR B 102 THR B 106 1 O GLU B 105 N PHE B 11 SHEET 3 AB5 4 VAL B 85 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AB5 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB6 4 SER B 114 PHE B 118 0 SHEET 2 AB6 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AB6 4 TYR B 173 SER B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AB6 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 AB7 4 ALA B 153 LEU B 154 0 SHEET 2 AB7 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB7 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AB7 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AB8 4 GLN A 3 GLN A 6 0 SHEET 2 AB8 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AB8 4 THR A 77 MET A 82 -1 O LEU A 80 N VAL A 20 SHEET 4 AB8 4 VAL A 67 ASP A 72 -1 N ASP A 72 O THR A 77 SHEET 1 AB9 6 GLU A 10 LYS A 12 0 SHEET 2 AB9 6 THR A 107 VAL A 111 1 O THR A 110 N LYS A 12 SHEET 3 AB9 6 ALA A 88 GLU A 97 -1 N TYR A 90 O THR A 107 SHEET 4 AB9 6 PHE A 34 GLN A 39 -1 N VAL A 37 O PHE A 91 SHEET 5 AB9 6 LEU A 45 VAL A 52 -1 O LEU A 48 N TRP A 36 SHEET 6 AB9 6 SER A 56 TYR A 59 -1 O SER A 56 N VAL A 52 SHEET 1 AC1 4 GLU A 10 LYS A 12 0 SHEET 2 AC1 4 THR A 107 VAL A 111 1 O THR A 110 N LYS A 12 SHEET 3 AC1 4 ALA A 88 GLU A 97 -1 N TYR A 90 O THR A 107 SHEET 4 AC1 4 PRO A 100C TRP A 103 -1 O PHE A 102 N ARG A 94 SHEET 1 AC2 4 SER A 120 LEU A 124 0 SHEET 2 AC2 4 THR A 137 TYR A 147 -1 O GLY A 141 N LEU A 124 SHEET 3 AC2 4 TYR A 185 PRO A 194 -1 O LEU A 187 N VAL A 144 SHEET 4 AC2 4 VAL A 171 THR A 173 -1 N HIS A 172 O VAL A 190 SHEET 1 AC3 4 SER A 120 LEU A 124 0 SHEET 2 AC3 4 THR A 137 TYR A 147 -1 O GLY A 141 N LEU A 124 SHEET 3 AC3 4 TYR A 185 PRO A 194 -1 O LEU A 187 N VAL A 144 SHEET 4 AC3 4 VAL A 177 LEU A 178 -1 N VAL A 177 O SER A 186 SHEET 1 AC4 3 THR A 153 TRP A 157 0 SHEET 2 AC4 3 ILE A 207 HIS A 212 -1 O ASN A 209 N SER A 156 SHEET 3 AC4 3 THR A 217 LYS A 222 -1 O THR A 217 N HIS A 212 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.23 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.04 SSBOND 5 CYS B 23 CYS B 88 1555 1555 2.09 SSBOND 6 CYS B 134 CYS B 194 1555 1555 2.01 SSBOND 7 CYS A 22 CYS A 92 1555 1555 2.29 SSBOND 8 CYS A 142 CYS A 208 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -6.82 CISPEP 2 TYR L 140 PRO L 141 0 2.75 CISPEP 3 PHE H 148 PRO H 149 0 -9.80 CISPEP 4 GLU H 150 PRO H 151 0 -1.17 CISPEP 5 SER B 7 PRO B 8 0 -7.27 CISPEP 6 TYR B 140 PRO B 141 0 2.41 CISPEP 7 PHE A 148 PRO A 149 0 -8.49 CISPEP 8 GLU A 150 PRO A 151 0 0.50 SITE 1 AC1 12 PHE H 174 PRO H 175 VAL H 177 SER H 186 SITE 2 AC1 12 LEU H 187 SER H 188 GLN L 160 SER L 162 SITE 3 AC1 12 SER L 176 SER L 177 THR L 178 HOH L 411 SITE 1 AC2 4 THR H 116 GLY H 118 GLY L 30 GLU L 68 SITE 1 AC3 3 PHE H 29 SER H 30 HOH H 464 SITE 1 AC4 6 ARG H 100B LEU H 100D ARG H 100E TYR L 49 SITE 2 AC4 6 GLY L 50 TYR L 91 SITE 1 AC5 6 VAL H 171 HIS H 172 HOH H 425 GLU L 165 SITE 2 AC5 6 ASP L 167 HOH L 427 SITE 1 AC6 8 GLU H 46 TRP H 47 ALA H 60 ARG H 62 SITE 2 AC6 8 SER L 96 THR L 97 PHE L 98 HOH L 494 SITE 1 AC7 7 VAL A 171 HIS A 172 HOH A 446 GLU B 165 SITE 2 AC7 7 ASP B 167 HOH B 404 HOH B 426 SITE 1 AC8 3 SER A 28 PHE A 29 SER A 30 SITE 1 AC9 6 ARG A 100B LEU A 100D ARG A 100E TYR B 49 SITE 2 AC9 6 GLY B 50 TYR B 91 SITE 1 AD1 3 ASN A 211 ASN A 216 LYS A 218 SITE 1 AD2 4 SER B 94 LYS D 685 ASN E 671 TRP E 672 CRYST1 55.342 58.029 98.725 87.94 76.09 72.52 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018069 -0.005691 -0.004703 0.00000 SCALE2 0.000000 0.018067 0.000709 0.00000 SCALE3 0.000000 0.000000 0.010443 0.00000